Name: Deinococcus aetherius ST0316
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3896

Type strain:

Species: Deinococcus aetherius

Strain Designation: ST0316

Culture col. no.: DSM 21230, JCM 11751

Strain history: A. Yamagishi ST0316.

NCBI tax ID(s): 200252 (species)

SI-ID 398023

DSM 21230

Special Collections

Section

Deinococcus aetherius ST0316 is a coccus-shaped bacterium that was isolated from air sample, stratosphere.

coccus-shaped
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Deinococcales*
	Family	*Deinococcaceae*
	Genus	*Deinococcus*
	Species	**Deinococcus aetherius**
	Full Scientific Name (LPSN)	Deinococcus aetherius Yang et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29323]	Cell width	1.25 µm

[Ref.: #29323]	Cell shape	coccus-shaped

[Ref.: #29323]	Motility	no

[Ref.: #29323]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15499]

Culture medium

PLATE COUNT AGAR (DSMZ Medium 464)

[Ref.: #15499]

Culture medium growth

[Ref.: #15499]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15499]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15499]	growth	28 °C
[Ref.: #29323]	growth	25-30 °C
[Ref.: #29323]	optimum	27.5 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #29323]			optimum	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29323]

Ability of spore formation

[Ref.: #67770]

Observation

quinones: MK-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29323]	asparagine ChEBI	+	carbon source
[Ref.: #29323]	esculin ChEBI	+	hydrolysis
[Ref.: #29323]	glycerol ChEBI	+	carbon source
[Ref.: #29323]	nitrate ChEBI	+	reduction

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29323]		catalase	+	1.11.1.6
[Ref.: #29323]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15499]	Sample type/isolated from	air sample, stratosphere
[Ref.: #15499]	Country	Japan
[Ref.: #15499]	Country ISO 3 Code	JPN
[Ref.: #15499]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Air dust collected in the stratosphere
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Air

#Outdoor Air

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB087287 (>99% sequence identity) for Deinococcus aetherius subclade from Microbeatlas

Aquatic Samples	14
Soil Samples	11
Animal Samples	66
Plant Samples	5
Total Samples	96

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15499]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15499]	Deinococcus aetherius gene for 16S ribosomal RNA, partial sequence	AB087287	1473	GenBank ENA	200252 tax ID

[Ref.: #15499]	GC-content	69.8 mol%
[Ref.: #67770]	GC-content	69.8 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #15499]

Culture collection no.

DSM 21230, JCM 11751

[Ref.: #73406]

SI-ID 398023

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Deinococcus aestuarii sp. nov. and Deinococcus aquaedulcis sp. nov., two novel resistant bacteria isolated from pearl river estuary.	Yin LZ, Li JL, Liu ZT, Fang BZ, Wang P, Luo XQ, Dong L, Duan L, Li SH, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-021-01680-x	2021	*
Phylogeny	Deinococcus planocerae sp. nov., isolated from a marine flatworm.	Lin H, Wang Y, Huang J, Lai Q, Xu Y	Antonie Van Leeuwenhoek	10.1007/s10482-017-0854-2	2017	*
Phylogeny	Deinococcus aetherius sp. nov., isolated from the stratosphere.	Yang Y, Itoh T, Yokobori SI, Shimada H, Itahashi S, Satoh K, Ohba H, Narumi I, Yamagishi A	Int J Syst Evol Microbiol	10.1099/ijs.0.010876-0	2009	*
Genetics	Complete Genome Sequence of the Radioresistant Bacterium Deinococcus aetherius ST0316, Isolated from Air Dust Collected in the Lower Stratosphere above Japan.	Satoh K, Hagiwara K, Katsumata K, Kubo A, Yokobori SI, Yamagishi A, Oono Y, Narumi I	Microbiol Resour Announc	10.1128/mra.00836-22	2022	*

References

#15499

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21230

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29323

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25735 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#73406

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398023.1 )

#25735

IJSEM 776 2010 ( DOI 10.1099/ijs.0.010876-0 , PubMed 19656935 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Deinococcus aetherius in external resources:
SILVA
BRENDA
PANGAEA
GBIF