Deinococcus aerophilus (DSM 24869, JCM 15443, KACC 12746)

Name: Deinococcus aerophilus (DSM 24869, JCM 15443, KACC 12746)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3898

Type strain

Strain Designation 5516T-11

Culture col. no. DSM 24869 JCM 15443 KACC 12746 5516T-11 CIP 110189

NCBI tax ID(s) 522488

Special Collections DSMZ JCM Literature strains CIP

History CIP <- 2010, KACC DSMZ <- JCM <- S.-W. Kwon, KACC; 5516T-11 JCM <-- S.-W. Kwon 5516T-11. CIP <- 2010, KACC

Links

Deinococcus aerophilus 5516T-11 is an aerobe, Gram-positive, coccus-shaped bacterium that was isolated from air.

Gram-positive coccus-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 370168

JCM 15443,KACC 12746,DSM 24869,CIP 110189

@ref 20215

Last LPSN update 2026-05-29 08:25:49

Domain Bacteria

Phylum Deinococcota

Class Deinococci

Order Deinococcales

Family Deinococcaceae

Genus Deinococcus

Species Deinococcus aerophilus

Full scientific name Deinococcus aerophilus Yoo et al. 2010

Morphology

Cell morphology

@ref	Gram stain	Cell width	Cell shape	Motility
29569	positive	1.7 µm	coccus-shaped
116077	positive		coccus-shaped

Pigmentation

29569

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
17794	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
41027	MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati		Distilled water make up to (1000.000 ml);R2A agar (18.200 g)
116077	CIP Medium 566	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
17794	positive	growth	28
29569	positive	growth	05-45
29569	positive	optimum	30
41027	positive	growth	30
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH
29569	positive	optimum	7
29569	positive	growth	06-08

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29569	aerobe
116077	obligate aerobe
125439	obligate aerobe	91.708

Spore formation

@ref	Spore formation	Confidence
125439		96.314

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29569	NaCl	positive	growth	0-1 %

Observation

67770

Observationquinones: MK-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29569	17128 ChEBI	adipate	+	carbon source
29569	4853 ChEBI	esculin	+	hydrolysis
29569	17234 ChEBI	glucose	+	carbon source
29569	28087 ChEBI	glycogen	+	carbon source
29569	27570 ChEBI	histidine	+	carbon source
29569	17306 ChEBI	maltose	+	carbon source
29569	29864 ChEBI	mannitol	+	carbon source
29569	37684 ChEBI	mannose	+	carbon source
29569	28053 ChEBI	melibiose	+	carbon source
116077	17632 ChEBI	nitrate	-	reduction
116077	16301 ChEBI	nitrite	-	reduction
29569	17822 ChEBI	serine	+	carbon source
29569	30911 ChEBI	sorbitol	+	carbon source
29569	17992 ChEBI	sucrose	+	carbon source
29569	31011 ChEBI	valerate	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
116077	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
29569	catalase	+	1.11.1.6
116077	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
29569	gelatinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116077	oxidase	-
68382	trypsin	+	3.4.21.4	from API zym
116077	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116077	-	+	+	-	-	+	-	-	+	+	+	+	-	+	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Air

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
17794	air	Taean region	Republic of Korea	KOR	Asia
67770	Air sample from Taean region		Republic of Korea	KOR	Asia
116077	Environment, Air sample	Taean region	Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17794	1	Risk group (German classification) According to TRBA 466
116077	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464707v1 assembly for Deinococcus aerophilus JCM 15443	scaffold	GCA_014647075	522488.3	2995823412	522488	59.41

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17794	Deinococcus aerophilus strain 5516T-11 16S ribosomal RNA gene, partial sequence	EU622979	1430		522488
124043	Deinococcus aerophilus strain JCM 15443 16S ribosomal RNA gene, partial sequence.	MT760367	1322		522488

GC content

@ref	GC-content (mol%)	Method
17794	59.3	high performance liquid chromatography (HPLC)
29569	59.3

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1464707v1 assembly for Deinococcus aerophilus JCM 15443
BV-BRC: 522488.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	91.71	no
125439	gram_stain	BacteriaNetⓘ	negative	76.38	no
125439	motility	BacteriaNetⓘ	yes	54.77	no
125439	spore_formation	BacteriaNetⓘ	no	96.31	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Deinococcus aerophilus JCM 15443
NCBI: GCA_014647075.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	51.96	yes
125438	anaerobic	anaerobicⓘ	no	93.14	yes
125438	aerobic	aerobicⓘ	yes	83.87	yes
125438	spore-forming	spore-formingⓘ	no	76.75	no
125438	thermophilic	thermophileⓘ	no	86.17	yes
125438	flagellated	motile2+ⓘ	no	73.29	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Deinococcus budaensis sp. nov., a mesophilic species isolated from a biofilm sample of a hydrothermal spring cave.	Makk J, Toth EM, Anda D, Pal S, Schumann P, Kovacs AL, Madl-Szonyi J, Marialigeti K, Borsodi AK	Int J Syst Evol Microbiol	10.1099/ijsem.0.001519	2016
Phylogeny	Deinococcus aerolatus sp. nov. and Deinococcus aerophilus sp. nov., isolated from air samples.	Yoo SH, Weon HY, Kim SJ, Kim YS, Kim BY, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.016030-0	2009

References

#17794	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24869
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25964	IJSEM 1191 2010 ( DOI 10.1099/ijs.0.016030-0 , PubMed 19667390 )
#29569	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25964
#41027	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#116077	Collection of Institut Pasteur ; Curators of the CIP; CIP 110189
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Deinococcus aerophilus (DSM 24869, JCM 15443, KACC 12746)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014647075

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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