Cite this strain

Bordetella pertussis (DSM 4923)

Name: Bordetella pertussis (DSM 4923)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 369

Type strain

Culture col. no. DSM 4923

NCBI tax ID(s) 520

Special Collections DSMZ

Links

Bordetella pertussis DSM 4923 is a mesophilic prokaryote of the family Alcaligenaceae.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 47883

DSM 4923

@ref 20215

Last LPSN update 2025-12-16 09:46:50

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Bordetella

Species Bordetella pertussis

Full scientific name Bordetella pertussis (Bergey et al. 1923) Moreno-López 1952 (Approved Lists 1980)

Synonyms (1)

"Hemophilus pertussis"

BacDive ID	Other strains from **Bordetella pertussis** (198)	Type strain
374	B. pertussis 18323, 18323 (P. Kendrick), DSM 5571, ATCC ... (type strain)
370	B. pertussis H 36, DSM 4924
371	B. pertussis DSM 4925
372	B. pertussis DSM 4926
373	B. pertussis DSM 4927
134395	B. pertussis R244, CIP 107606
134614	B. pertussis CIP 105894, Smarlab 99-36182
135515	B. pertussis R310, CIP 107609
135592	B. pertussis 28 H.Am, CIP A103
135605	B. pertussis CIP 58.10, NCTC 8082
135617	B. pertussis bugard, CIP 60.73
135619	B. pertussis CIP 60.74
135708	B. pertussis CIP 77.24
135825	B. pertussis BB165, CIP 81.29
135827	B. pertussis BB140, CIP 81.30
136448	B. pertussis Reilly 2, CIP 54.56
136664	B. pertussis R245, CIP 107607
136668	B. pertussis R246, CIP 107608
136675	B. pertussis R665, CIP 107596
136968	B. pertussis CIP 56.92, NCTC 6988
137041	B. pertussis CIP A104
137352	B. pertussis 134, CIP 81.43
137353	B. pertussis 509, CIP 81.44
139074	B. pertussis BB134, CIP 81.31, ATCC 41405
139076	B. pertussis 3779 Bl 2 S4, BB144, CIP 81.37
139078	B. pertussis Sato (Tohama Phase 1), CIP 81.32, CCUG 17138
141288	B. pertussis CCUG 699, LMG 14452
141294	B. pertussis CCUG 759
141295	B. pertussis CCUG 767
141296	B. pertussis CCUG 771
141300	B. pertussis CCUG 782
141317	B. pertussis CCUG 818
141728	B. pertussis CCUG 5451
142014	B. pertussis CCUG 9818, LMG 14453
142060	B. pertussis CCUG 10199
142138	B. pertussis CCUG 11005
142139	B. pertussis CCUG 11006
142140	B. pertussis CCUG 11007
142141	B. pertussis CCUG 11008
142147	B. pertussis CCUG 11034
142517	B. pertussis CCUG 12764
142636	B. pertussis CCUG 13475, LMG 15140
142890	B. pertussis CCUG 15609
142891	B. pertussis CCUG 15610, LMG 15141
143122	B. pertussis CCUG 17283, CIP 8132, LMG 14454
144223	B. pertussis CCUG 23702, LMG 15142
146945	B. pertussis CCUG 32523, LMG 14522
147148	B. pertussis CCUG 32950
147210	B. pertussis CCUG 33056, ATCC 8467
147400	B. pertussis CCUG 33528
147412	B. pertussis CCUG 33550, NCTC 8605
147433	B. pertussis CCUG 33577
147435	B. pertussis CCUG 33579
147465	B. pertussis CCUG 33616
147743	B. pertussis CCUG 34132
147744	B. pertussis CCUG 34133
148308	B. pertussis CCUG 35196 A
148309	B. pertussis CCUG 35196 B
148719	B. pertussis CCUG 35850
148802	B. pertussis CCUG 35955
149679	B. pertussis CCUG 38168, ATCC 9340, NCTC 8474
149874	B. pertussis CCUG 38589
149875	B. pertussis CCUG 38590
149876	B. pertussis CCUG 38591
149877	B. pertussis CCUG 38592
149878	B. pertussis CCUG 38593
149879	B. pertussis CCUG 38594
150166	B. pertussis CCUG 39155
150167	B. pertussis CCUG 39156
150168	B. pertussis CCUG 39157
150398	B. pertussis CCUG 39825
153043	B. pertussis CCUG 48371
153044	B. pertussis CCUG 48372
153045	B. pertussis CCUG 48373
153046	B. pertussis CCUG 48374
153047	B. pertussis CCUG 48375
153048	B. pertussis CCUG 48376
153049	B. pertussis CCUG 48377
153050	B. pertussis CCUG 48378
153051	B. pertussis CCUG 48379
153052	B. pertussis CCUG 48380
153053	B. pertussis CCUG 48381
153054	B. pertussis CCUG 48382
153073	B. pertussis CCUG 48422
153074	B. pertussis CCUG 48423
153075	B. pertussis CCUG 48426
153076	B. pertussis CCUG 48427
153077	B. pertussis CCUG 48428
153078	B. pertussis CCUG 48429
153079	B. pertussis CCUG 48430
153080	B. pertussis CCUG 48431
153081	B. pertussis CCUG 48432
153082	B. pertussis CCUG 48433
153116	B. pertussis CCUG 48528
153117	B. pertussis CCUG 48529
153118	B. pertussis CCUG 48530
153119	B. pertussis CCUG 48531
153120	B. pertussis CCUG 48532
153121	B. pertussis CCUG 48533
153122	B. pertussis CCUG 48534
153123	B. pertussis CCUG 48535
153124	B. pertussis CCUG 48536
153125	B. pertussis CCUG 48537
153126	B. pertussis CCUG 48538
173387	B. pertussis FR 0334, CRBIP4.100
173388	B. pertussis FR 0347, CRBIP4.101
173389	B. pertussis FR 0370, CRBIP4.102, BOR 102
173390	B. pertussis FR 0371, CRBIP4.103, BOR 103
173391	B. pertussis FR 0377, CRBIP4.104, BOR 104
173392	B. pertussis FR 0380, CRBIP4.105, BOR 105
173393	B. pertussis FR0383, CRBIP4.106, BOR 106
173394	B. pertussis FR0385, CRBIP4.107, BOR 107
173395	B. pertussis FR 0432, CRBIP4.109, BOR 109
173396	B. pertussis FR 0435, CRBIP4.110, BOR 110
173397	B. pertussis FR 0436, CRBIP4.111, BOR 111
173398	B. pertussis FR 0437, CRBIP4.112, BOR 112
173399	B. pertussis FR 0452, CRBIP4.113, BOR 113
173400	B. pertussis FR 0387, CRBIP4.114, BOR 114
173401	B. pertussis FR 0391, CRBIP4.115, BOR 115
173402	B. pertussis FR 0393, CRBIP4.116, BOR 116
173403	B. pertussis FR 0458, CRBIP4.117, BOR 117
173404	B. pertussis FR 0459, CRBIP4.118, BOR 118
173405	B. pertussis FR 0460, CRBIP4.119, BOR 119
173406	B. pertussis FR 0463, CRBIP4.120, BOR 120
173407	B. pertussis FR 0484, CRBIP4.121, BOR 121
173408	B. pertussis FR 0507, CRBIP4.122, BOR 122
173409	B. pertussis FR 0512, CRBIP4.123, BOR 123
173410	B. pertussis FR 0528, CRBIP4.124, BOR 124
173411	B. pertussis FR 0533, CRBIP4.125, BOR 125
173412	B. pertussis FR 0622, CRBIP4.126, BOR 126
173413	B. pertussis FR 0665, CRBIP4.127, BOR 127
173414	B. pertussis FR 0668, CRBIP4.128, BOR 128
173415	B. pertussis FR 0671, CRBIP4.129, BOR 129
173416	B. pertussis FR 0675, CRBIP4.130, BOR 130
173417	B. pertussis FR 0736, CRBIP4.131, BOR 131
173418	B. pertussis FR0749, CRBIP4.132, BOR 132
173419	B. pertussis FR 0792, CRBIP4.133, BOR 133
173420	B. pertussis FR 0787, CRBIP4.134, BOR 134
173421	B. pertussis FR0786, CRBIP4.135, BOR 135
173422	B. pertussis FR 0789, CRBIP4.136, BOR 136
173423	B. pertussis FR 0801, CRBIP4.137, BOR 137
173424	B. pertussis FR 0801, CRBIP4.138, BOR 138
173425	B. pertussis FR 0804, CRBIP4.139, BOR 139
173426	B. pertussis FR 0835, CRBIP4.140, BOR 140
173427	B. pertussis FR 0838, CRBIP4.141, BOR 141
173428	B. pertussis FR 0853, CRBIP4.142, BOR 142
173429	B. pertussis FR 0856, CRBIP4.143, BOR 143
173430	B. pertussis FR 0840, CRBIP4.144, BOR 144
173431	B. pertussis FR 0841, CRBIP4.145, BOR 145
173432	B. pertussis FR 0843, CRBIP4.146, BOR 146
173433	B. pertussis FR 0836, CRBIP4.147, BOR 147
173434	B. pertussis FR 0844, CRBIP4.148, BOR 148
173435	B. pertussis FR 0846, CRBIP4.149, BOR 149
173436	B. pertussis FR 0847, CRBIP4.150, BOR 150
173437	B. pertussis FR 0851, CRBIP4.151, BOR 151
173438	B. pertussis FR 0858, CRBIP4.152, BOR 152
173439	B. pertussis FR 0860, CRBIP4.153, BOR 153
173440	B. pertussis FR 0197, CRBIP4.154, BOR 154
173441	B. pertussis FR 0876, CRBIP4.155, BOR 155
173442	B. pertussis FR 1002, CRBIP4.156, BOR 156
173443	B. pertussis FR 1003, CRBIP4.157, BOR 157
173444	B. pertussis FR1004, CRBIP4.158, BOR 158
173445	B. pertussis FR1001, CRBIP4.159, BOR 159
173446	B. pertussis FR 1005, CRBIP4.160, BOR 160
173447	B. pertussis FR 1006, CRBIP4.161, BOR 161
173448	B. pertussis FR1007, CRBIP4.162, BOR 162
173449	B. pertussis FR 1008, CRBIP4.163, BOR 163
173450	B. pertussis FR 1010, CRBIP4.164, BOR 164
173451	B. pertussis FR 1010, CRBIP4.165, BOR 165
173452	B. pertussis FR 1041, CRBIP4.166, BOR 166
173453	B. pertussis FR 1049, CRBIP4.167, BOR 167
173454	B. pertussis FR1055, CRBIP4.168, BOR 168
173455	B. pertussis FR1057, CRBIP4.169, BOR 169
173456	B. pertussis FR 1059, CRBIP4.170, BOR 170
173457	B. pertussis FR1061, CRBIP4.171, BOR 171
173458	B. pertussis FR1103, CRBIP4.172, BOR 172
173459	B. pertussis FR1111, CRBIP4.173, BOR 173
173460	B. pertussis FR1032, CRBIP4.174, BOR 174
173461	B. pertussis FR1113, CRBIP4.175, BOR 175
173462	B. pertussis FR1116, CRBIP4.176, BOR 176
173463	B. pertussis FR1117, CRBIP4.177, BOR 177
173464	B. pertussis FR1139, CRBIP4.178, BOR 178
173465	B. pertussis FR1147, CRBIP4.179, BOR 179
173466	B. pertussis FR1149, CRBIP4.180, BOR 180
173467	B. pertussis FR1157, CRBIP4.181, BOR 181
173468	B. pertussis FR1159, CRBIP4.182, BOR 182
173469	B. pertussis RN029, CRBIP4.188, BOR 188
173470	B. pertussis RN50, CRBIP4.189, BOR 189
173471	B. pertussis RN086, CRBIP4.190, BOR 190
173472	B. pertussis RN127, CRBIP4.191, BOR 191
173473	B. pertussis RN154, CRBIP4.192, BOR 192
173474	B. pertussis RN162, CRBIP4.193, BOR 193
173475	B. pertussis FR0008, CRBIP4.203, BOR 203
173476	B. pertussis FR0738, CRBIP4.204, BOR 204
173477	B. pertussis FR0750, CRBIP4.205
173478	B. pertussis FR0778, CRBIP4.206, BOR 206
173479	B. pertussis FIN 12, PRCB 309, CRBIP4.210
173480	B. pertussis B 902, CRBIP4.211

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	96.979

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
1876	BORDET-GENGOU-MEDIUM (DIFCO) (DSMZ Medium 438)		Medium recipe at MediaDive	Name: BORDET-GENGOU-MEDIUM (DIFCO) (DSMZ Medium 438) Composition: Horse blood 150.0 g/l Bordet-Gengou-Agar-Base
1876	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
1876	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	92.6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
1876	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1876	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	Bordetella pertussis strain FDAARGOS_1542	complete		520.1280	520	99.65
124043	ASM2073588v1 assembly for Bordetella pertussis FDAARGOS_1542	complete	GCA_020735885	520.1272	520	97.96

GC content

1876

GC-content (mol%)61.0

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bordetella pertussis strain FDAARGOS_1542
PATRIC: 520.1280

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	86.60	no
125439	motility	BacteriaNetⓘ	yes	68.80	no
125439	gram_stain	BacteriaNetⓘ	positive	70.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	92.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bordetella pertussis strain FDAARGOS_1542
PATRIC: 520.1280

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.98	no
125438	anaerobic	anaerobicⓘ	no	97.87	no
125438	spore-forming	spore-formingⓘ	no	89.07	no
125438	aerobic	aerobicⓘ	yes	77.99	no
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	yes	84.65	no

Literature

References

#1876	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4923
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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