Strain identifier
BacDive ID: 369
Type strain: 
Species: Bordetella pertussis
Strain history: <- M. Walker
NCBI tax ID(s): 520 (species)
version 8.1 (current version)
General
@ref: 1876
BacDive-ID: 369
DSM-Number: 4923
keywords: genome sequence, Bacteria, mesophilic
description: Bordetella pertussis DSM 4923 is a mesophilic bacterium of the family Alcaligenaceae.
NCBI tax id
- NCBI tax id: 520
- Matching level: species
strain history
- @ref: 1876
- history: <- M. Walker
doi: 10.13145/bacdive369.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Alcaligenaceae
- genus: Bordetella
- species: Bordetella pertussis
- full scientific name: Bordetella pertussis (Bergey et al. 1923) Moreno-López 1952 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Hemophilus pertussis
@ref: 1876
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Alcaligenaceae
genus: Bordetella
species: Bordetella pertussis
full scientific name: Bordetella pertussis (Bergey et al. 1923) Moreno-López 1952
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 1876 | BORDET-GENGOU-MEDIUM (DIFCO) (DSMZ Medium 438) | yes | https://mediadive.dsmz.de/medium/438 | Name: BORDET-GENGOU-MEDIUM (DIFCO) (DSMZ Medium 438) Composition: Horse blood 150.0 g/l Bordet-Gengou-Agar-Base |
| 1876 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
culture temp
- @ref: 1876
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | - | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | - | assimilation |
| 68369 | 24265 | gluconate | - | assimilation |
| 68369 | 17306 | maltose | - | assimilation |
| 68369 | 59640 | N-acetylglucosamine | - | assimilation |
| 68369 | 16899 | D-mannitol | - | assimilation |
| 68369 | 16024 | D-mannose | - | assimilation |
| 68369 | 30849 | L-arabinose | - | assimilation |
| 68369 | 17634 | D-glucose | - | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | - | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | - | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1876 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + |
Safety information
risk assessment
- @ref: 1876
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bordetella pertussis strain FDAARGOS_1542 | 520.1280 | complete | patric | 520 |
| 66792 | Bordetella pertussis strain FDAARGOS_1542 | 520.1272 | complete | patric | 520 |
GC content
- @ref: 1876
- GC-content: 61.0
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| gram-positive | no | 98.367 | no |
| anaerobic | no | 99.333 | no |
| halophile | no | 75.595 | no |
| spore-forming | no | 95.717 | no |
| glucose-util | no | 78.85 | no |
| aerobic | yes | 80.936 | no |
| thermophile | no | 98.452 | yes |
| motile | yes | 86.513 | no |
| flagellated | yes | 66.341 | no |
| glucose-ferment | no | 90.516 | yes |
External links
@ref: 1876
culture collection no.: DSM 4923
straininfo link
- @ref: 70049
- straininfo: 47883
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 1876 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4923) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4923 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 68369 | Automatically annotated from API 20NE | |||
| 70049 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47883.1 | StrainInfo: A central database for resolving microbial strain identifiers |