Bordetella parapertussis (DSM 13415, ATCC 15311, CCUG 413)

Name: Bordetella parapertussis (DSM 13415, ATCC 15311, CCUG 413)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 368

Type strain

Strain Designation 522

Culture col. no. DSM 13415 ATCC 15311 CCUG 413 LMG 14449 NCTC 5952 3 more

NCBI tax ID(s) 519

Special Collections DSMZ CCUG CIP

History <- CCUG <- NCTC <- H. B. Maitland <- G. Eldering and P. Kendrick; 522 CIP <- 1964, NCTC, Acinetobacter parapertussis <- H.B. Maitland <- G. Eldering and P. Kendrick: strain 522

Links

Bordetella parapertussis 522 is an aerobe, mesophilic, Gram-negative human pathogen that was isolated from patient with whooping cough.

Gram-negative rod-shaped aerobe mesophilic human pathogen genome sequence 16S sequence

Name and taxonomic classification

SI-ID 389264

LMG 1831,ATCC 15311,CCUG 413,LMG 14449,LMG 1815,NCTC 5952,DSM 13415,CIP 64.11,CNCTC 5648

@ref 20215

Last LPSN update 2026-02-09 11:17:51

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Bordetella

Species Bordetella parapertussis

Full scientific name Bordetella parapertussis (Eldering and Kendrick 1938) Moreno-López 1952 (Approved Lists 1980)

Synonyms (1)

"Bacillus parapertussis"

BacDive ID	Other strains from **Bordetella parapertussis** (45)	Type strain
367	B. parapertussis MIS180, DSM 4922
134665	B. parapertussis 143, R340, CIP 107613
134767	B. parapertussis 17903 L4, CIP 61.14
135634	B. parapertussis 1333, CIP 63.34
135734	B. parapertussis 210, R341, CIP 107612
136250	B. parapertussis 1111, R343, CIP 107610
136669	B. parapertussis R342, 756, CIP 107611
138892	B. parapertussis 22651 L2, CIP 63.2
138893	B. parapertussis 1074, CIP 63.33
139421	B. parapertussis Irène, CIP 62.26
141326	B. parapertussis CCUG 882, NCTC 7385, LMG 14450
141629	B. parapertussis CCUG 4099, LMG 14451
142629	B. parapertussis CCUG 13437
143876	B. parapertussis CCUG 21692
143877	B. parapertussis CCUG 21693
144045	B. parapertussis CCUG 22566
144067	B. parapertussis CCUG 22674
144084	B. parapertussis CCUG 22885
144340	B. parapertussis CCUG 24674
146331	B. parapertussis CCUG 30933
146917	B. parapertussis CCUG 32448
147413	B. parapertussis CCUG 33551, ATCC 15237, NCTC 10853
147434	B. parapertussis CCUG 33578
147436	B. parapertussis CCUG 33580
149088	B. parapertussis CCUG 36842
149089	B. parapertussis CCUG 36843
149090	B. parapertussis CCUG 36844
149091	B. parapertussis CCUG 36845
149092	B. parapertussis CCUG 36846
149093	B. parapertussis CCUG 36847
149094	B. parapertussis CCUG 36848
149095	B. parapertussis CCUG 36849
149221	B. parapertussis CCUG 37292
149937	B. parapertussis CCUG 38719
156496	B. parapertussis CCUG 62178
173360	B. parapertussis BPP003, CRBIP4.183, BOR 183
173361	B. parapertussis BPP004, CRBIP4.184, BOR 184
173362	B. parapertussis BPP005, CRBIP4.185, BOR 185
173363	B. parapertussis BPP006, CRBIP4.186, BOR 186
173364	B. parapertussis BPP007, CRBIP4.187, BOR 187
173365	B. parapertussis BPP008, CRBIP4.194, BOR 194
173366	B. parapertussis BPP009, CRBIP4.195, BOR 195
173367	B. parapertussis BPP010, CRBIP4.196, BOR 196
173368	B. parapertussis BPP11, CRBIP4.197, BOR 197
173369	B. parapertussis BPP012, CRBIP4.198, BOR 198

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
121584	negative	rod-shaped
125438	negative			96.479

Colony morphology

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5043	BORDET-GENGOU-MEDIUM (DIFCO) (DSMZ Medium 438)	Medium recipe at MediaDive	Name: BORDET-GENGOU-MEDIUM (DIFCO) (DSMZ Medium 438) Composition: Horse blood 150.0 g/l Bordet-Gengou-Agar-Base
5043	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
5043	BHI MEDIUM (DSMZ Medium 215)	Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
40899	MEDIUM 21 - for Bordetella		Distilled water make up to (1000.000 ml);Horse blood (250.000 ml);Bordetgengou agar (30.000 g)
121584	CIP Medium 21	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5043	positive	growth	37	mesophilic
40899	positive	growth	37	mesophilic
44193	positive	growth	37	mesophilic
121584	positive	growth	25-37	mesophilic
121584	negative	growth	5
121584	negative	growth	15
121584	negative	growth	41
121584	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
44193	aerobe
121584	obligate aerobe
125439	obligate aerobe	96.2

Halophily

@ref	Salt	Growth	Tested relation	Concentration
121584	NaCl	positive	growth	0-2 %
121584	NaCl		growth	4 %
121584	NaCl		growth	6 %
121584	NaCl		growth	8 %
121584	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68374	29016 ChEBI	arginine	-	hydrolysis	from API ID32E
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68374	17057 ChEBI	cellobiose	-	builds acid from	from API ID32E
121584	16947 ChEBI	citrate	-	carbon source
68374	18333 ChEBI	D-arabitol	-	builds acid from	from API ID32E
68377	15824 ChEBI	D-fructose	-	builds acid from	from API NH
68374	18024 ChEBI	D-galacturonic acid	-	builds acid from	from API ID32E
68374	17634 ChEBI	D-glucose	-	builds acid from	from API ID32E
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68374	16899 ChEBI	D-mannitol	-	builds acid from	from API ID32E
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
121584	4853 ChEBI	esculin	-	hydrolysis
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
121584	17234 ChEBI	glucose	-	degradation
121584	606565 ChEBI	hippurate	-	hydrolysis
68374	30849 ChEBI	L-arabinose	-	builds acid from	from API ID32E
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68374	18403 ChEBI	L-arabitol	-	builds acid from	from API ID32E
68374	62345 ChEBI	L-rhamnose	-	builds acid from	from API ID32E
68374	25094 ChEBI	lysine	-	degradation	from API ID32E
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
121584	15792 ChEBI	malonate	-	assimilation
68374	15792 ChEBI	malonate	-	assimilation	from API ID32E
68377	17306 ChEBI	maltose	-	builds acid from	from API NH
68374	17306 ChEBI	maltose	-	builds acid from	from API ID32E
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68374	17268 ChEBI	myo-inositol	-	builds acid from	from API ID32E
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
121584	17632 ChEBI	nitrate	-	reduction
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
121584	16301 ChEBI	nitrite	-	reduction
68374	18257 ChEBI	ornithine	-	degradation	from API ID32E
68374	18394 ChEBI	palatinose	-	builds acid from	from API ID32E
68374		Potassium 5-ketogluconate	-	builds acid from	from API ID32E
68374	15963 ChEBI	ribitol	-	builds acid from	from API ID32E
68374	30911 ChEBI	sorbitol	-	builds acid from	from API ID32E
68374	17992 ChEBI	sucrose	-	builds acid from	from API ID32E
68377	17992 ChEBI	sucrose	-	builds acid from	from API NH
68374	27082 ChEBI	trehalose	-	builds acid from	from API ID32E
68377	27897 ChEBI	tryptophan	-	energy source	from API NH
68374	27897 ChEBI	tryptophan	-	energy source	from API ID32E
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68377	16199 ChEBI	urea	+	hydrolysis	from API NH
68374	16199 ChEBI	urea	+	hydrolysis	from API ID32E
68369	16199 ChEBI	urea	+	hydrolysis	from API 20NE

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
121584	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68377	35581 ChEBI	indole	from API NH
68369	35581 ChEBI	indole	from API 20NE
68374	35581 ChEBI	indole	from API ID32E
121584	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test	Voges-proskauer-test	Methylred-test
121584	15688 ChEBI	acetoin		-
121584	17234 ChEBI	glucose			-
68377	35581 ChEBI	indole	-			from API NH
68374	35581 ChEBI	indole	-			from API ID32E
68369	35581 ChEBI	indole	-			from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
121584	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68374	alpha-galactosidase	-	3.2.1.22	from API ID32E
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68374	alpha-glucosidase	-	3.2.1.20	from API ID32E
68374	alpha-maltosidase	-		from API ID32E
68382	alpha-mannosidase	-	3.2.1.24	from API zym
121584	amylase	-
68374	arginine dihydrolase	-	3.5.3.6	from API ID32E
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
121584	beta-galactosidase	-	3.2.1.23
68374	beta-galactosidase	-	3.2.1.23	from API ID32E
68377	beta-galactosidase	-	3.2.1.23	from API NH
68382	beta-glucosidase	-	3.2.1.21	from API zym
68374	beta-glucosidase	-	3.2.1.21	from API ID32E
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68374	beta-glucuronidase	-	3.2.1.31	from API ID32E
121584	caseinase	-	3.4.21.50
121584	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	-	1.9.3.1	from API 20NE
121584	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
121584	gamma-glutamyltransferase	+	2.3.2.2
121584	gelatinase	-
68369	gelatinase	-		from API 20NE
68374	L-aspartate arylamidase	-	3.4.11.21	from API ID32E
121584	lecithinase	-
68382	leucine arylamidase	-	3.4.11.1	from API zym
121584	lipase	-
68374	lipase	-		from API ID32E
68382	lipase (C 14)	-		from API zym
121584	lysine decarboxylase	-	4.1.1.18
68374	lysine decarboxylase	-	4.1.1.18	from API ID32E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68374	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API ID32E
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121584	ornithine decarboxylase	-	4.1.1.17
68374	ornithine decarboxylase	-	4.1.1.17	from API ID32E
121584	oxidase	-
121584	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
121584	tryptophan deaminase	-
68377	tryptophan deaminase	-	4.1.99.1	from API NH
121584	urease	+	3.5.1.5
68377	urease	+	3.5.1.5	from API NH
68374	urease	+	3.5.1.5	from API ID32E
68369	urease	+	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

Fatty acid profile

Metadata FA analysis

@ref

44193

Fatty acid	Percentage	ECL
C16:0	39.2	16
C17:0 CYCLO	37.9	16.888
C16:1 ω7c	7.1	15.819
C14:0	5.6	14
C18:0	4.8	18
C10:0 3OH	2.1	11.423
C17:0	1.3	17
C18:2 ω6,9c/C18:0 ANTE	1	17.724
C15:0	0.5	15
C18:1 ω7c /12t/9t	0.4	17.824

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121584	-	-	+	+	-	-	-	-	-	-	+	+	-	-	-	+	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
5043	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	+	-	-

API ID32E

@ref	ODC	ADH (Arg)	LDC (Lys)	URE	LARL	GAT	5KG	LipaseLIP	Phenol red (Acidification)RP	beta GLU	MAN	MAL	ADO	PLE	beta GUR	MNT	IND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta GAL	GLU	SAC	LARA	DARL	alpha GLU	alpha GAL	TRE	RHA	INO	CEL	SOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
44193	-	-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API NH

@ref	PEN	GLU	FRU	MAL	SAC	ODC	URE	LIP	PAL	beta GAL	ProA	GGT	IND
5043	+/-	-	-	-	-	+	+	-	-	-	+	-	-
5043	-	-	-	-	-	-	+	+	+	-	-	+	-
5043	-	+/-	-	-	-	-	+	+	-	-	-	+	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
121584	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Infection	#Disease
#Infection	#Patient

Isolation

@ref	Sample type
5043	patient with whooping cough
44193	Whooping cough
121584	Whooping cough

Taxonmaps

69479

Global distribution of 16S sequence U04949 (>99% sequence identity) for Bordetella pertussis from Microbeatlas

Aquatic Samples	9586
Soil Samples	4730
Animal Samples	5464
Plant Samples	3383
Total Samples	23163

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
5043			2	Risk group (German classification) According to TRBA 466
121584			2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Bordetella parapertussis strain FDAARGOS_1541	complete		519.102		519	99.5
124043	ASM2073592v1 assembly for Bordetella parapertussis FDAARGOS_1541	complete	GCA_020735925	519.100	8120650947	519	99.02
124043	ASM4487981v1 assembly for Bordetella parapertussis NCTC 5952 [522]	complete	GCA_044879815			519	98.58
66792	52451_D01 assembly for Bordetella parapertussis NCTC5952	contig	GCA_900445785	519.18	2811995279	519	78.89
124043	ASM152554v2 assembly for Bordetella parapertussis FDAARGOS_177	contig	GCA_001525545	519.3	2773857998	519	76.57

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5043	Bordetella parapertussis ATCC 15311 16S rRNA, partial sequence	U04949	1464		519

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bordetella parapertussis strain FDAARGOS_1541
PATRIC: 519.102

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	86.80	no
125439	motility	BacteriaNetⓘ	yes	73.80	no
125439	gram_stain	BacteriaNetⓘ	negative	89.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bordetella parapertussis strain NCTC 5952
PATRIC: 519.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.48	no
125438	anaerobic	anaerobicⓘ	no	97.81	no
125438	spore-forming	spore-formingⓘ	no	88.55	no
125438	aerobic	aerobicⓘ	yes	87.73	yes
125438	thermophilic	thermophileⓘ	no	96.57	yes
125438	flagellated	motile2+ⓘ	yes	84.29	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Detection and differentiation of Bordetella spp. by real-time PCR.	Koidl C, Bozic M, Burmeister A, Hess M, Marth E, Kessler HH.	J Clin Microbiol	10.1128/jcm.01303-06	2007
	Development of a Multiplex Real-Time PCR Assay for the Simultaneous Detection of Two Fungal Pathogens Causing Pneumonia.	Lim HJ, Ahn S, No JH, Park MY, Kim MJ, Sohn YH, Shin KS, Park JE, Yang YJ.	J Fungi (Basel)	10.3390/jof10090619	2024
	Laboratory and epidemiology data of pertussis cases and close contacts: A 5-year case-based surveillance of pertussis in Indonesia, 2016-2020.	Sunarno S, Sofiah SN, Amalia N, Hartoyo Y, Rizki A, Puspandari N, Saraswati RD, Febriyana D, Febrianti T, Susanti I, Khariri K, Sariadji K, Muna F, Rukminiati Y, Sulistyaningrum N, Riana DA, Maha MS, Fitriana F, Voronika V, Muslih M, Kamal M, Setiawaty V.	PLoS One	10.1371/journal.pone.0266033	2022
Enzymology	Validation and Implementation of a Diagnostic Algorithm for DNA Detection of Bordetella pertussis, B. parapertussis, and B. holmesii in a Pediatric Referral Hospital in Barcelona, Spain.	Valero-Rello A, Henares D, Acosta L, Jane M, Jordan I, Godoy P, Munoz-Almagro C.	J Clin Microbiol	10.1128/jcm.01231-18	2019
	Conserved Structural Features of Core Oligosaccharides among the Lipopolysaccharides of Respiratory Pathogens from the Genus Bordetella Analyzed Exclusively by NMR Spectroscopy.	Ucieklak K, Koj S, Niedziela T.	Int J Mol Sci	10.3390/ijms22031029	2021
Pathogenicity	Direct Detection of Erythromycin-Resistant Bordetella pertussis in Clinical Specimens by PCR.	Wang Z, Han R, Liu Y, Du Q, Liu J, Ma C, Li H, He Q, Yan Y.	J Clin Microbiol	10.1128/jcm.01499-15	2015
	Comparison of culture and real-time PCR for detection of Bordetella pertussis isolated from patients in Iran.	Nikbin VS, Shahcheraghi F, Lotfi MN, Zahraei SM, Parzadeh M.	Iran J Microbiol		2013
Metabolism	Bordetella holmesii Lipopolysaccharide Hide and Seek Game with Pertussis: Structural Analysis of the O-Specific Polysaccharide and the Core Oligosaccharide of the Type Strain ATCC 51541.	Ucieklak K, Koj S, Niedziela T.	Int J Mol Sci	10.3390/ijms21176433	2020
Phylogeny	Multiplex LightCycler PCR assay for detection and differentiation of Bordetella pertussis and Bordetella parapertussis in nasopharyngeal specimens.	Sloan LM, Hopkins MK, Mitchell PS, Vetter EA, Rosenblatt JE, Harmsen WS, Cockerill FR, Patel R.	J Clin Microbiol	10.1128/jcm.40.1.96-100.2002	2002
Enzymology	Evaluation of real-time PCR for detection of and discrimination between Bordetella pertussis, Bordetella parapertussis, and Bordetella holmesii for clinical diagnosis.	Templeton KE, Scheltinga SA, van der Zee A, Diederen BM, van Kruijssen A, Goossens H, Kuijper E, Claas EC.	J Clin Microbiol	10.1128/jcm.41.9.4121-4126.2003	2003
	Rapid PCR Detection of Mycoplasma hominis, Ureaplasma urealyticum, and Ureaplasma parvum.	Cunningham SA, Mandrekar JN, Rosenblatt JE, Patel R.	Int J Bacteriol	10.1155/2013/168742	2013
Pathogenicity	In vitro susceptibilities of Bordetella pertussis and Bordetella parapertussis to seven fluoroquinolones.	Hoppe JE, Simon CG.	Antimicrob Agents Chemother	10.1128/aac.34.11.2287	1990
Pathogenicity	In vitro susceptibilities of Bordetella pertussis and Bordetella parapertussis to six new oral cephalosporins.	Hoppe JE, Muller J.	Antimicrob Agents Chemother	10.1128/aac.34.7.1442	1990
	Development and evaluation of a loop-mediated isothermal amplification method for rapid diagnosis of Bordetella pertussis infection.	Kamachi K, Toyoizumi-Ajisaka H, Toda K, Soeung SC, Sarath S, Nareth Y, Horiuchi Y, Kojima K, Takahashi M, Arakawa Y.	J Clin Microbiol	10.1128/jcm.44.5.1899-1902.2006	2006
	Production of recombinant Bordetella pertussis serotype 2 fimbriae in Bordetella parapertussis and Bordetella bronchiseptica: utility of Escherichia coli gene expression signals.	Walker MJ, Guzman CA, Rohde M, Timmis KN.	Infect Immun	10.1128/iai.59.5.1739-1746.1991	1991
Enzymology	Nested PCR optimized for detection of Bordetella pertussis in clinical nasopharyngeal samples.	Backman A, Johansson B, Olcen P.	J Clin Microbiol	10.1128/jcm.32.10.2544-2548.1994	1994
Enzymology	Multiplex PCR-based assay for detection of Bordetella pertussis in nasopharyngeal swab specimens.	Wadowsky RM, Michaels RH, Libert T, Kingsley LA, Ehrlich GD.	J Clin Microbiol	10.1128/jcm.34.11.2645-2649.1996	1996
Enzymology	Detection of Mycobacterium tuberculosis by PCR amplification with pan-Mycobacterium primers and hybridization to an M. tuberculosis-specific probe.	Tevere VJ, Hewitt PL, Dare A, Hocknell P, Keen A, Spadoro JP, Young KK.	J Clin Microbiol	10.1128/jcm.34.4.918-923.1996	1996
Phylogeny	Phylogenetic analysis of Ara+ and Ara- Burkholderia pseudomallei isolates and development of a multiplex PCR procedure for rapid discrimination between the two biotypes.	Dharakul T, Tassaneetrithep B, Trakulsomboon S, Songsivilai S.	J Clin Microbiol	10.1128/jcm.37.6.1906-1912.1999	1999
	Antigenic relationships among penicillin-binding proteins 1 from members of the families Pasteurellaceae and Enterobacteriaceae.	Schryvers AB, Wong SS, Bryan LE.	Antimicrob Agents Chemother	10.1128/aac.30.4.559	1986
Enzymology	Simultaneous detection of Chlamydophila pneumoniae and Mycoplasma pneumoniae by use of molecular beacons in a duplex real-time PCR.	Gullsby K, Storm M, Bondeson K.	J Clin Microbiol	10.1128/jcm.01540-07	2008
	Bordetella parapertussis and Bordetella bronchiseptica contain transcriptionally silent pertussis toxin genes.	Arico B, Rappuoli R.	J Bacteriol	10.1128/jb.169.6.2847-2853.1987	1987
	Clinical characteristics and outcomes of Bordetella parapertussis compared with Bordetella pertussis: a retrospective observational study.	Kitano T, Kitagawa D, Hashimoto E, Yoshida S.	Clin Microbiol Infect	10.1016/j.cmi.2025.11.020	2025
	Trends in Commercial Laboratory Testing and Positivity for Bordetella Species in the United States, 2019 Through 2023.	Isenhour CJ, Pawloski L, Hariri S, Skoff TH.	J Infect Dis	10.1093/infdis/jiaf141	2025
	Performance of a Rapid, Highly Multiplexed Nucleic Acid Detection Assay for Identification of Viral and Bacterial Pathogens from Upper Respiratory Tract Specimens.	Johnson CL, Dunn JJ.	J Appl Lab Med	10.1093/jalm/jfaf144	2025
	Clinical characteristics of pediatric parapertussis: A single-center case-control study.	Okamoto K, Funaki T, Kidokoro S, Ishiguro A, Ogimi C.	J Infect Chemother	10.1016/j.jiac.2025.102740	2025
	Evaluation of three real-time PCR methods for the detection and the differentiation of Bordetella pertussis, Bordetella parapertussis and Bordetella holmesii.	Cherkaoui S, Wautier M, Martini H, Dahma H, van den Wijngaert S, Martiny D, Yin N.	Eur J Clin Microbiol Infect Dis	10.1007/s10096-025-05129-1	2025
	Retraction for Hiramatsu et al., "Melanin Produced by Bordetella parapertussis Confers a Survival Advantage to the Bacterium during Host Infection".	Hiramatsu Y, Nishida T, Nugraha DK, Sugihara F, Horiguchi Y.	mSphere	10.1128/msphere.01072-24	2025
	Addressing the consequences of missing vaccines: A case report of pertussis in a child with acute lymphoblastic leukemia.	Perea Rojas DM, Rojas Torres IL, Perea Vasquez LE.	Respir Med Case Rep	10.1016/j.rmcr.2025.102173	2025
	Transient reemergence of Bordetella parapertussis in France in 2022.	Bouchez V, Toubiana J, Guillot S, Parapertussis Study Group, El Belghiti FA, Landier A, Armatys N, Trombert-Paolantoni S, Soares A, Rodrigues C, Brisse S.	J Med Microbiol	10.1099/jmm.0.001843	2024
	Draft genome sequences of Bordetella parapertussis clinical isolates during an increase in confirmed cases from Colombia, 2023.	Montilla-Escudero E, Rojas-Baquero F, Bonilla-Bravo V, Vargas-Florez N.	Microbiol Resour Announc	10.1128/mra.00672-24	2025
	No innocent bystanders: pertussis vaccination and evolutionary parallelisms between Bordetella parapertussis and Bordetella pertussis.	Bouchez V, Moreno-Mingorance A, Mir-Cros A, Landier A, Armatys N, Guillot S, Martin-Gomez MT, Rodrigues C, Toubiana J, Bento AI, Weigand MR, Gonzalez-Lopez JJ, Brisse S.	Microb Genom	10.1099/mgen.0.001544	2025
	BPP0974 is a Bordetella parapertussis adhesin expressed in the avirulent phase, implicated in biofilm formation and intracellular survival.	Carrica MDC, Gorgojo JP, Alvarez-Hayes J, Valdez HA, Lamberti YA, Rodriguez ME.	Microb Pathog	10.1016/j.micpath.2024.106754	2024
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	Adenylate cyclase toxin of Bordetella parapertussis disrupts the epithelial barrier granting the bacterial access to the intracellular space of epithelial cells.	Gorgojo JP, Carrica MDC, Baroli CM, Valdez HA, Alvarez Hayes J, Rodriguez ME.	PLoS One	10.1371/journal.pone.0291331	2023
	Pneumonia caused by Bordetella hinzii: A case report.	Wang L, Yao X, He F, Lv J, Zhou H, Li Q.	Infect Med (Beijing)	10.1016/j.imj.2025.100182	2025
	Age-Dependent Risk of Bronchial Asthma Exacerbation in Respiratory Syncytial Virus Co-infection.	Arimura K, Kan-O K, Sato Y, Kikuchi K, Miura H, Sato A, Kondo M, Tagaya E.	Lung	10.1007/s00408-025-00847-x	2025
	Reemergence of Bordetella parapertussis, United States, 2019-2023.	Noble BA, Jiudice SS, Jones JD, Timbrook TT.	Emerg Infect Dis	10.3201/eid3005.231278	2024
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	Do not let perfect be the enemy of good: the current reality of Bordetella testing.	Yee R.	Microbiol Spectr	10.1128/spectrum.02210-24	2025
	Bordetella parapertussis adenylate cyclase toxin promotes the bacterial survival to the encounter with macrophages.	Carrica MDC, Gorgojo JP, Lamberti YA, Valdez HA, Rodriguez ME.	Microb Pathog	10.1016/j.micpath.2022.105898	2023
	A case report of discordant Chikungunya manifestations in a married couple: From acute undifferentiated fever to fatal sepsis with purpura fulminans.	Pathomchareansukchai D, Horthongkham N, Rattanaumpawan P.	IDCases	10.1016/j.idcr.2025.e02182	2025
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	Case report: Plastic bronchitis associated with Bordetella parapertussis.	Li Z, Xu Y, Shen W.	Medicine (Baltimore)	10.1097/md.0000000000034239	2023
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	Positivity analysis of Bordetella spp. and SARS-CoV-2 coinfections in clinical samples from Colombia, 2021-2022.	Bonilla-Bravo V, Montilla-Escudero E, Castro Martinez X, Rojas F, Duarte C, Aparicio S, Gomez-Rangel SY, Rodriguez Romero P, Bonilla SL, Prieto Alvarado F, Rojas Sotelo J, Rey Benito G.	Microbiol Spectr	10.1128/spectrum.01242-25	2025
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	Pertussis Vaccines Scarcely Provide Protection against Bordetella parapertussis Infection in Children-A Systematic Review and Meta-Analysis.	Remesh AT, Alagarasu K, Jadhav S, Prabhakar M, Viswanathan R.	Vaccines (Basel)	10.3390/vaccines12030253	2024
	Comparing sputum, nasopharyngeal swabs, and combined samples for respiratory bacterial detection using multiplex PCR.	Kim KJ, Yun SG, Nam M-H, Lee CK, Cho Y.	Microbiol Spectr	10.1128/spectrum.02285-24	2025
	The impact of non-pharmaceutical interventions on community non-SARS-CoV-2 respiratory infections in preschool children.	Klee B, Diexer S, Horn J, Langer S, Wende M, Ortiz D, Bielecka A, Strowig T, Mikolajczyk R, Gottschick C.	BMC Pediatr	10.1186/s12887-024-04686-2	2024
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	Pseudo-Outbreak of Bordetella parapertussis Caused by Contaminated Swabs in the Netherlands.	Flipse J, Tromp AT, Bosman J, Ten Hove C, Beks H, Kortbeek T, Bastiaens GJH, Mascini EM.	Emerg Infect Dis	10.3201/eid2804.212097	2022
	Epidemiological and Clinical Characteristics of Infections in Hospitalized Children During and After the COVID-19 Pandemic.	Prgomet S, Boban Z, Prgomet S, Boban N.	Viruses	10.3390/v17101296	2025
Pathogenicity	Myeloid cell-specific type I interferon signaling mediates age-dependent inflammation and protection in Bordetella pertussis infection.	Kumar A, Bukowski A, Carbonetti NH.	Infect Immun	10.1128/iai.00306-25	2025
	Case Report: Aspergillus fumigatus-associated plastic bronchitis in a pediatric patient with cystic fibrosis complicated by allergic bronchopulmonary aspergillosis.	Liu F, Zhao L, Gao Y, Wang X, Zhang H.	Front Pediatr	10.3389/fped.2025.1632989	2025
	Clinical Evaluation of the BIOFIRE SPOTFIRE Respiratory Panel.	Chan WS, Ho CW, Chan TC, Hung J, To MY, Leung SM, Lai KC, Wong CY, Leung CP, Au CH, Wan TS, Zee JS, Ma ES, Tang BS.	Viruses	10.3390/v16040600	2024
	Real-Life Insights into Pertussis Diagnosis: High Yield of PCR Testing and Clinical Outcomes-An Emerging Old Enemy or Just a Sign of PCR Times?	Dimeas IE, Kotsiou OS, Salgkami P, Poulakida I, Boutlas S, Daniil Z, Papadamou G, Gourgoulianis KI.	J Pers Med	10.3390/jpm14121116	2024
	Bordetella Pertussis in Children: A Retrospective Analysis of the Clinical Impact and the Role of Vaccination.	Matache Vasilache ER, Gurau G, Stoian VI, Zaharia AE, Ciocoiu M, Maftei NM, Constantinide P, Matei MN, Nechita A, Tutunaru D.	Life (Basel)	10.3390/life15101514	2025
	Epidemiology of respiratory tract infections using multiplex PCR in a Japanese acute care hospital during the COVID19 pandemic.	Kitagawa D, Kitano T, Furumori M, Suzuki S, Shintani Y, Suzuki Y, Nakano A, Nakano R, Nishiyama A, Yoshida S, Yano H, Maeda K, Nakamura F.	Heliyon	10.1016/j.heliyon.2023.e14424	2023
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	Genome Characteristic of Bordetella parapertussis Isolated from Iran.	Safarchi A, Saedi S, Tay CY, Lamichhane B, Nakhost Lotfi M, Shahcheraghi F.	Curr Microbiol	10.1007/s00284-022-03009-x	2022
	Bordetella pertussis, a reemerging pathogen in pediatric respiratory infections. A study in Quito, Ecuador.	Vasconez Noguera S, Jaramillo K, Zabala A, Villacis JE.	Rev Argent Microbiol	10.1016/j.ram.2020.07.001	2021
Pathogenicity	DAT, deacylating autotransporter toxin, from Bordetella parapertussis demyristoylates Galpha_i GTPases and contributes to cough.	Hiramatsu Y, Nishida T, Ota N, Tamaki Y, Nugraha DK, Horiguchi Y.	Proc Natl Acad Sci U S A	10.1073/pnas.2308260120	2023
Genetics	Benchmarking of bioinformatics tools for the hybrid de novo assembly of human and non-human whole-genome sequencing data.	Munoz-Barrera A, Rubio-Rodriguez LA, Jaspez D, Corrales A, Marcelino-Rodriguez I, Ortiz L, Mendoza P, Lorenzo-Salazar JM, Gonzalez-Montelongo R, Flores C.	Comput Struct Biotechnol J	10.1016/j.csbj.2025.07.020	2025
Genetics	Genomic insights into Bordetella pertussis evolution and macrolide resistance in Yiwu, China.	Xu W, Wei Q, Wu B, Zhu Z, Guan W, Chen G, Xu Z.	BMC Genomics	10.1186/s12864-025-12213-5	2025
	Humidifier-Related Lung Injury Leading to Hypersensitivity Pneumonitis: A Case Report.	Obregon M, Faiek S, White P.	Cureus	10.7759/cureus.70448	2024
	Coronavirus OC43 and Influenza H3N2 Concomitant Unilateral Parotitis: The Importance of Laboratory Tests in Mumps-Like Parotitis.	Spampinato S, Pavone P, Cacciaguerra G, Cocuzza S, Venanzi Rullo E, Marino S, Marino A, Nunnari G.	Pathogens	10.3390/pathogens12111309	2023
	Acute Respiratory Tract Infections (ARTIs) in Children after COVID-19-Related Social Distancing: An Epidemiological Study in a Single Center of Southern Italy.	Falsaperla R, Sortino V, La Cognata D, Barberi C, Corsello G, Malaventura C, Suppiej A, Collotta AD, Polizzi A, Grassi P, Ruggieri M.	Diagnostics (Basel)	10.3390/diagnostics14131341	2024
	The 2024 resurgence of Bordetella pertussis in Brazil and a decade-long epidemiological overview.	Sansone NMS, Boschiero MN, Marson FAL.	Front Public Health	10.3389/fpubh.2025.1549735	2025
Genetics	Diagnostic value of metagenomic next-generation sequencing using bronchoalveolar lavage fluid samples for pathogen detection in children with severe or refractory pneumonia.	Zhao M, Shi Y, Zhang C, Lu M, Shen M, Xie L, Wang L, Lu A.	Microbiol Spectr	10.1128/spectrum.01087-24	2025
Phylogeny	Disseminated Echovirus 11 infection in a newborn in the Province of Bolzano, Italy.	Bianconi I, Battisti L, Staffler A, Giacobazzi E, Masi E, Incrocci E, Bellutti M, Fontana S, Stefanelli P, Buttinelli G, Pagani E.	Infection	10.1007/s15010-024-02315-9	2024
	Case report of entrectinib associated fulminant myocarditis.	Rundhawa G, Ali M, Jacob R, Obeng-Gyimah E, Vranian MN.	Eur Heart J Case Rep	10.1093/ehjcr/ytae650	2025
	Epidemiology and Burden of Human Metapneumovirus Among Italian Adults in Outpatient and Inpatient Settings, 2014-2025.	Domnich A, Panatto D, Paolozzi V, Ogliastro M, Ricucci V, Icardi G, Orsi A.	Influenza Other Respir Viruses	10.1111/irv.70175	2025
	Multiplex PCR and Antibiotic Use in Children with Community-Acquired Pneumonia.	Del Rosal T, Bote-Gascon P, Falces-Romero I, Sainz T, Baquero-Artigao F, Rodriguez-Molino P, Mendez-Echevarria A, Bravo-Queipo-de-Llano B, Alonso LA, Calvo C.	Children (Basel)	10.3390/children11020245	2024
	The utility of syndromic respiratory pathogen panels: the premise of flexible and customizable approaches.	Norton JM, Dashler G, Klein E, Mostafa HH.	J Clin Microbiol	10.1128/jcm.00313-25	2025
	Significant impact of COVID-19 pandemic on the circulation of respiratory viruses in Tunisia, 2020-2021.	Taktak A, Smaoui F, Chtourou A, Maaloul M, Karray-Hakim H, Hammami A, Fki-Berrajah L, Gargouri S.	Clin Epidemiol Glob Health	10.1016/j.cegh.2023.101306	2023
	Pertussis vaccination in pregnancy - current data on safety and effectiveness.	Zasztowt-Sternicka M, Jagielska AM, Nitsch-Osuch AS.	Ginekol Pol	10.5603/gp.a2021.0145	2021
	The Path of Bronchiolitis Towards Intensive Care: Risk Factor Analysis in a Large Italian Cohort	Maglione M, Pierri L, Savoia F, Cali C, Ragucci R, Sarno M, Ranucci G, Coppola E, Nunziata F, Di Toro A, Tipo V, Giannattasio A.	J Clin Med		2025
	Epidemiology, co-infection, and seasonal patterns of respiratory tract infections in a tertiary care center in Saudi Arabia between 2021 and 2022.	Alzahrani N, Alshehri A, Alshehri A, Al Johani S.	Front Public Health	10.3389/fpubh.2025.1492653	2025
Enzymology	A novel multilocus variable-number tandem repeat analysis for Bordetella parapertussis.	Kamachi K, Otsuka N, Fumimoto R, Ozawa K, Yao SM, Chiang CS, Luu LDW, Lan R, Shibayama K, Watanabe M.	J Med Microbiol	10.1099/jmm.0.001095	2019
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	Characterization of genome-wide transpositions induced by colistin exposure in multi-drug-resistant Klebsiella pneumoniae.	Rajakani SG, Xavier BB, Nguyen NM, Lin Q, Braspenning A, Plantinga NL, Wittekamp BHJ, Zarkotou O, Van Houdt R, Glupczynski Y, Pournaras S, Bonten MJM, Malhotra-Kumar S.	Antimicrob Agents Chemother	10.1128/aac.01574-24	2025
	Effect of Influenza Vaccination on the Disease Severity and Viral Load Among Adult Outpatients and Inpatients.	Domnich A, Paolozzi V, Garzillo G, Orsi A, Icardi G.	Vaccines (Basel)	10.3390/vaccines13101046	2025
	Epidemiology of respiratory viruses according to age group, 2023-24 winter season, Kyoto, Japan.	Matsumura Y, Yamamoto M, Tsuda Y, Shinohara K, Tsuchido Y, Yukawa S, Noguchi T, Takayama K, Nagao M.	Sci Rep	10.1038/s41598-024-85068-7	2025
	Epidemiological and Clinical Changes in RSV-Associated Pneumonia in Children in Mexico Before and During the COVID 19 Pandemic.	Diaz-Torres IA, Cabrera-Takane ID, Ortega-Vargas FY, Herrera-Gonzalez AA, Garcia-Leon ML, Bautista-Carbajal P, Noyola DE, Juarez-Tobias MS, Martinez-Arce PA, Espinosa-Sotero MDC, Tabla-Orozco V, Martinez-Aguilar G, Rojas-Larios F, Wong-Chew RM.	Infect Dis Rep	10.3390/idr17060139	2025
	Beyond Passive Immunity: Three Neonatal Influenza Cases Highlighting Impact of Missed Maternal Vaccination.	Profir I, Popescu CM, Popa GV, Nechita A.	Clin Pract	10.3390/clinpract15070124	2025
	Detection of a Human Adenovirus Outbreak, Including Some Critical Infections, Using Multipathogen Testing at a Large University, September 2022-January 2023.	Montgomery JP, Marquez JL, Nord J, Stamper AR, Edwards EA, Valentini N, Frank CJ, Washer LL, Ernst RD, Park JI, Price D, Collins J, Smith-Jeffcoat SE, Hu F, Knox CL, Khan R, Lu X, Kirking HL, Hsu CH.	Open Forum Infect Dis	10.1093/ofid/ofae192	2024
	Investigation of the Correlation Between ELISA and Serum Amyloid A in the Diagnosis of Bordetella bronchiseptica in Dogs.	Akar K, Sanioglu Golen G, Ekin IH.	Vet Med Sci	10.1002/vms3.70323	2025
	Impact of FilmArray respiratory panel test for hospitalized pediatric respiratory tract infection in Taiwan: A 3-year single-center cohort study.	Hu JJ, Wang DL, Tzeng IS.	Medicine (Baltimore)	10.1097/md.0000000000037320	2024
	Pertussis among patients with clinically compatible illness in the Amhara Regional State, Ethiopia.	Taye S, Tigabu Z, Damtie D, Yismaw G, Moodley C, Nicol MP, Tessema B, Gelaw B, Moges F.	Int J Infect Dis	10.1016/j.ijid.2021.03.073	2021
	From lockdown to recovery: changing patterns of viral infection severity in a pediatric cohort with asthma.	Jones C, Laws M, Yousuf S, Delo A, Hartzell S, Kinder E, Ingold A, Boyanton BL, Frederick D, Frenner RA, Hathorn E, Mourani PM, Kennedy JL.	Front Allergy	10.3389/falgy.2025.1645968	2025
	Impact of COVID-19 pandemic on Legionella testing and infection rates in Ontario.	Peci A, Zhang P, Sullivan A, Li Y, Bi Y, Murphy A, Leibson K, Gubbay JB, Majury A.	BMC Public Health	10.1186/s12889-025-24620-0	2025
	Invasive Bordetella pertussis Infection in Infants: A Case Report.	Liao Y, Li WR, Zhu Y, Luo SH, Liao Q, Wan CM.	Open Forum Infect Dis	10.1093/ofid/ofac478	2022
	The seroepidemiology of immunoglobulin G antibodies against pertussis toxin and filamentous hemagglutinin in the east of China during the COVID-19 pandemic.	Sun X, Zhang T, Sun J, Zhou J, Chen Q, Jia C, Xu Y, Wu Y, Wang Z, Wang W.	Hum Vaccin Immunother	10.1080/21645515.2024.2331438	2024
Metabolism	Shotgun proteomic analysis of Bordetella parapertussis provides insights into the physiological response to iron starvation and potential new virulence determinants absent in Bordetella pertussis.	Oviedo JM, Surmann K, Gorgojo JP, Valdez H, Dhople VM, Lamberti Y, Volker U, Rodriguez ME.	J Proteomics	10.1016/j.jprot.2019.103448	2019
	An Adverse Double-Hit by Pembrolizumab: A Case Report of Bullous Pemphigoid and Pneumonitis.	Chatzigrigoriadis C, Avramidis P, Davoulos C, Dimitrakopoulos FI, Eleftherakis G, Petropoulou C, Sperdouli D, Stergiopoulos GM, Galiatsatos P, Assimakopoulos S.	J Med Cases	10.14740/jmc5089	2025
	The epidemiology of pediatric outpatient acute respiratory tract infections in the US: a multi-facility analysis of multiplex PCR testing from 2018 to 2023.	Timbrook TT, Glancey M, Noble BA, Eng S, Heins Z, Hommel B, Tessonneau M, Galvin BW, Macalino G.	Microbiol Spectr	10.1128/spectrum.03423-23	2024
	Impact of a Concurrent Respiratory Virus Infection on the Clinical Presentation and Response to Initial Treatment of Kawasaki Disease: A Single-Center Observational Study.	Koyanagi T, Nakagawa R, Okada M, Yokoyama H, Amano S, Shimoyama T, Udagawa T, Suzuki N, Hosokawa S, Nagasawa M.	J Clin Med	10.3390/jcm14030775	2025
	Observational Study on the Clinical Reality of Community-Acquired Respiratory Virus Infections in Adults and Older Individuals.	Nagasawa M, Udagawa T, Kato T, Tanaka I, Yamamoto R, Sakaguchi H, Sekikawa Y.	Pathogens	10.3390/pathogens13110983	2024
	Development of a wastewater based infectious disease surveillance research system in South Korea.	Kim YT, Lee K, Lee H, Son B, Song M, Lee SH, Kwon M, Kim DS, Noh TH, Lee S, Kim YJ, Lee MK, Lee KR.	Sci Rep	10.1038/s41598-024-76614-4	2024
	Comparative structural analysis of bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase from Bordetella pertussis and Bordetella parapertussis: a drug target against pertussis.	Sharn HO, Singh DB, Singh S.	In Silico Pharmacol	10.1007/s40203-020-00069-4	2021
	Highly selective impedimetric determination of Haemophilus influenzae protein D using maze-like boron-doped carbon nanowall electrodes.	Brodowski M, Kowalski M, Skwarecka M, Palka K, Skowicki M, Kula A, Lipinski T, Dettlaff A, Ficek M, Ryl J, Dziabowska K, Nidzworski D, Bogdanowicz R.	Talanta	10.1016/j.talanta.2020.121623	2021
	Respiratory pathogens detected in specimens collected for COVID-19 surveillance in Zambia.	Nyahoda M, Saasa N, Changula K, Muleya W, Mupila Z, Chikoti C, Moonga G, Sutcliffe C, Kwenda G, Simulundu E.	J Public Health Afr	10.4102/jphia.v16i1.684	2025
	Sources and clinical characteristics of infant pertussis in China: increasing contribution of siblings.	Luo F, Zheng S, Zhou Y, Zhu Y, Su Y, Dai R, Hua C, Zhang H, He H.	BMC Infect Dis	10.1186/s12879-025-10536-y	2025
	Epidemiological investigation of a pertussis outbreak among schoolchildren in Burkina Faso, 2019.	Ilboudo AK, Cisse A, Savadogo M, Sana M, Gouba N, Sourabie Y, Nayaga R, Tialla D, Zongo M, Yameogo I, Tarnagda Z.	BMC Res Notes	10.1186/s13104-025-07129-y	2025
	Genomic analysis of Oceanotoga teriensis strain UFV_LIMV02, a multidrug-resistant thermophilic bacterium isolated from an offshore oil reservoir.	Santos AJDC, Dias RS, da Silva CHM, Vidigal PMP, de Sousa MP, da Silva CC, de Paula SO.	Access Microbiol	10.1099/acmi.0.000801.v3	2024
	Genomic and transcriptomic variation in Bordetella spp. following induction of erythromycin resistance.	Fong W, Timms V, Sim E, Pey K, Nguyen T, Sintchenko V.	J Antimicrob Chemother	10.1093/jac/dkac272	2022
	High circulation of pertussis in infants and close contacts in Antananarivo, the capital of Madagascar in Africa, and Cambodia in Asia.	Noel G, Harimanana A, Borand L, Campana F, Leng C, Botr C, Rafetrarivony L, Rajabizadeh M, Kerleguer A, Dim B, Randriamoramanana AM, Ait-Ahmed M, Guiso N, Collard JM, Taieb F, PERILIC working group.	BMC Infect Dis	10.1186/s12879-025-10590-6	2025
	Pertussis Outbreak During 2023 in Gipuzkoa, North Spain.	Marimon JM, Montes M, Vizuete N, Alvarez Guerrico L, Aginagalde AH, Mir-Cros A, Gonzalez-Lopez JJ, Vicente D.	Vaccines (Basel)	10.3390/vaccines12101192	2024
	Mycoplasma pneumoniae Outbreak in 2023: Post-pandemic Resurgence of an Atypical Bacterial Pathogen.	Upadhyay P, Singh V.	Cureus	10.7759/cureus.58757	2024
	Acute Respiratory Distress Syndrome: A Rare Manifestation of Rhinovirus Infection.	Phan AT, Ghantarchyan H, Nguyen VT, Hasan M.	Cureus	10.7759/cureus.43484	2023
	Comparison of Bordetella species identification among differing rt-PCR assays in the United States.	Cole M, Simon AK, Faulkner A, Skoff T, Tondella ML, Montero C, Nye MB, Williams M.	Microbiol Spectr	10.1128/spectrum.00783-24	2024
	Characteristics of Mycoplasma pneumoniae Pneumonia in Romanian Children.	Ulmeanu AI, Ciuparu GE, Matran ER.	Microorganisms	10.3390/microorganisms13040883	2025
	Long Term Sequelae of Mild RSV Infections in Healthy Children Aged 0-3 Years in the Primary Care Setting-A Prospective Two Year Follow Up Observational Study.	Ehlmaier P, Voitl P, Riepl A, Lischka L, Voitl JJM, Langer K, Kuzio U, Muhl-Riegler A, Muhl B, Diesner-Treiber SC.	J Med Virol	10.1002/jmv.70441	2025
	Burden and Outcomes of Severe Lower Respiratory Tract Infections with Unknown Etiology: A Retrospective Observational Study on Epidemiological Trends Over an 8-Year Period (2016-2024).	Scaglione G, Canuti M, Offer M, Breschi V, Piralla A, Baldanti F, Del Castillo G, Scovenna F, Buoro S, Morani F, Cereda D, Bandera A, Gori A, Colaneri M.	Infect Dis Ther	10.1007/s40121-025-01148-9	2025
	Viral aetiology of severe acute respiratory illness among patients admitted during the 2022 peri-Hajj period.	Assiri AM, Alsuraihi H, Alshahrani AMM, Alzaid SZ, Albarraq AM, Asiri S, Algwizani AR, Alotaibi A, Al-Tawfiq JA.	IJID Reg	10.1016/j.ijregi.2023.05.004	2023
	COVID-19 Restrictions Are Associated With a Significant Decrease of All Common Respiratory Viral Illnesses in Children.	Randall MM, Despujos Harfouche F, Raae-Nielsen J, Chen BG, Chen M, Brown LA.	Clin Pediatr (Phila)	10.1177/00099228211044842	2022
	Rhabdomyolysis after BNT162b2 mRNA Covid-19 vaccine in an adolescent male.	Sutcu M, Gul D, Atik F, Kara M.	Malawi Med J	10.4314/mmj.v34i2.13	2022
	Pathogen surveillance and risk factors for pulmonary infection in patients with lung cancer: A retrospective single-center study	Shan H, Wang J, Zhang Q, Ming Z, Zhang Y, He P, Fang P, Zhang M, Li W, Shi H, Guan Y, Yang S.	Open Medicine		2025
	Reactive infectious mucocutaneous eruption secondary to SARS-CoV-2.	Ryder CY, Pedersen EA, Mancuso JB.	JAAD Case Rep	10.1016/j.jdcr.2021.10.007	2021
	Bordetella pertussis in a four-time kidney transplant recipient: A call for immunization programs at transplant centers.	Hovel EM, Pease RC, Scarano AJ, Chen DJ, Saddler CM.	Transpl Infect Dis	10.1111/tid.13120	2019
	Reduction and persistence of co-circulating respiratory viruses during the SARS-CoV-2 pandemic.	Smedberg JR, DiBiase LM, Hawken SE, Allen A, Mohan S, Santos C, Smedberg T, Barzin AH, Wohl DA, Miller MB.	Am J Infect Control	10.1016/j.ajic.2022.06.008	2022
Enzymology	Streptococcus pneumoniae and Haemophilus influenzae nasopharyngeal molecular detection in children with acute respiratory tract infection in SANADOR Hospital, Romania.	Giuca MC, Cilcic C, Mihaescu G, Gavrila A, Dinescu M, Gatej RI.	J Med Microbiol	10.1099/jmm.0.001038	2019
	Fatal Gets More Fatal: A COVID-19 Infection With Macrophage Activation Syndrome.	Aydin Y, Vemuri B, Vajta Gomez JP, Challa PK, Zhang H.	Cureus	10.7759/cureus.25591	2022
Proteome	Mix24X, a Lab-Assembled Reference to Evaluate Interpretation Procedures for Tandem Mass Spectrometry Proteotyping of Complex Samples.	Mappa C, Alpha-Bazin B, Pible O, Armengaud J.	Int J Mol Sci	10.3390/ijms24108634	2023
	Resurgence of Bordetella pertussis, including one macrolide-resistant isolate, France, 2024.	Rodrigues C, Bouchez V, Soares A, Trombert-Paolantoni S, Ait El Belghiti F, Cohen JF, Armatys N, Landier A, Blanchot T, Hervo M, REMICOQ study group, Toubiana J, Brisse S.	Euro Surveill	10.2807/1560-7917.es.2024.29.31.2400459	2024
	Spread of Respiratory Pathogens During the COVID-19 Pandemic Among Children in the Northeast of Italy.	Cason C, Zamagni G, Cozzi G, Tonegutto D, Ronfani L, Oretti C, De Manzini A, Barbi E, Comar M, Amaddeo A.	Front Microbiol	10.3389/fmicb.2022.804700	2022
	Do Pertussis Vaccines Protect Against Bordetella parapertussis?	Liko J, Robison SG, Cieslak PR.	Clin Infect Dis	10.1093/cid/cix221	2017
	Hamman's Syndrome after Vaginal Delivery: A Case of Postpartum Spontaneous Pneumomediastinum with Subcutaneous Emphysema and Review of the Literature.	Olafsen-Barnes K, Kaland MM, Kajo K, Rydsaa LJ, Visnovsky J, Zubor P.	Healthcare (Basel)	10.3390/healthcare12131332	2024
Pathogenicity	A recombinant iron transport protein from Bordetella pertussis confers protection against Bordetella parapertussis.	Alvarez Hayes J, Oviedo JM, Valdez H, Laborde JM, Maschi F, Ayala M, Shah R, Fernandez Lahore M, Rodriguez ME.	Microbiol Immunol	10.1111/1348-0421.12532	2017
	Changing Epidemiology of Acute Viral Respiratory Infections in Hospitalized Children: The Post-Lockdown Effect.	Maglione M, Pascarella A, Botti C, Ricci G, Morelli F, Camelia F, Micillo A, Cali C, Savoia F, Tipo V, Giannattasio A.	Children (Basel)	10.3390/children9081242	2022
Genetics	Clinical and Epidemiological Insights into a Parainfluenza Virus Type 3 Outbreak in Multiple Myeloma Patients.	Timsit S, Mellon G, Forgeard N, Mercier-Delarue S, Mahjoub N, Euzen V, Harel S, Elessa D, Osinski N, Diaz E, Royer B, Arnulf B, Salmona M, Legoff J.	J Med Virol	10.1002/jmv.70411	2025
	Rebound of Respiratory Virus Activity and Seasonality to Pre-Pandemic Patterns.	Gosert R, Naegele K, Weiss M, Bingisser R, Nickel CH, Meyer J, Siegemund M, Bassetti S, Drager S, Berger CT, Franzek F, Heininger U, Bielicki J, Hirsch HH, Keller PM, Weisser M, Khanna N, Tschudin-Sutter S, Leuzinger K.	J Med Virol	10.1002/jmv.70658	2025
	SARS-CoV-2 pandemic non-pharmacologic interventions temporally associated with reduced pediatric infections due to Mycoplasma pneumoniae and co-infecting respiratory viruses in Arkansas.	Boyanton BL, Frenner RA, Ingold A, Ambroggio L, Kennedy JL.	Microbiol Spectr	10.1128/spectrum.02908-23	2024
	Impact of molecular diagnostic techniques on the acute respiratory infection sentinel surveillance program, Antioquia, Colombia, 2022.	Maya MA, Ortiz C, Averhoff F, Carabali M, Perez-Restrepo LS, Ciuoderis-Aponte K, Davila AI, Bastidas D, Buitrago S, Cloherty GA, Berg MG, Landy A, Hernandez-Ortiz JP, Rebolledo PA, Osorio JE.	Front Epidemiol	10.3389/fepid.2024.1519378	2024
	Knowledge and Attitudes of Parents of School-Aged Children Regarding Vaccinations, and an Analysis of Measles and Pertussis Vaccination Coverage Using the Example of the City of Radomsko in Central Poland.	Nowicki P, Gorajska M, Garus-Pakowska A.	Vaccines (Basel)	10.3390/vaccines13080869	2025
Enzymology	The classical Bordetella species and MALDI-TOF technology: a brief experience.	Zintgraff J, Irazu L, Lara CS, Rodriguez M, Santos M.	J Med Microbiol	10.1099/jmm.0.000860	2018
	Investigation of etiology of community-acquired pneumonia in hospitalized patients in a tertiary hospital of São Paulo City, Brazil.	Joelsons D, Alencar CS, Pinho JRR, Ho YL.	Braz J Infect Dis	10.1016/j.bjid.2023.103690	2023
	Species interactions may help explain the erratic periodicity of whooping cough dynamics.	Bhattacharyya S, Ferrari MJ, Bjornstad ON.	Epidemics	10.1016/j.epidem.2017.12.005	2018
	JMM Profile: Bordetella pertussis and whooping cough (pertussis): still a significant cause of infant morbidity and mortality, but vaccine-preventable.	Fry NK, Campbell H, Amirthalingam G.	J Med Microbiol	10.1099/jmm.0.001442	2021
	Pertussis prevalence among adult patients with acute cough.	Ilbay A, Tanriover MD, Zarakol P, Guzelce EC, Bolek H, Unal S.	Turk J Med Sci	10.55730/1300-0144.5349	2022
	Distinct clinical characteristics of bocavirus and Mycoplasma pneumoniae infection in children plastic bronchitis.	Liu M, Wei D, Zhang T, Xu Y, Guo W.	Immun Inflamm Dis	10.1002/iid3.1373	2024
	Universal administration of nirsevimab in infants: an analysis of hospitalisations and paediatric intensive care unit admissions for RSV-associated lower respiratory tract infections.	Bermudez-Barrezueta L, Matias Del Pozo V, Marugan-Miguelsanz JM, Lopez EI, Uribe-Reina P, Romero Del Hombrebueno Y, Morales-Moreno AJ, Rojo-Rello S, Eiros JM, Pino-Vazquez MA.	Eur J Pediatr	10.1007/s00431-025-06125-5	2025
	Prevalence and Clinical Impact of Viral and Bacterial Coinfections in Hospitalized Children and Adolescents Aged under 18 Years with COVID-19 during the Omicron Wave in Russia.	Yakovlev AS, Afanasev VV, Alekseenko SI, Belyaletdinova IK, Isankina LN, Gryaznova IA, Skalny AV, Kozlovskaya LI, Ishmukhametov AA, Karganova GG.	Viruses	10.3390/v16081180	2024
	Safety assessments of recombinant DTaP vaccines developed in South Korea.	Choi GS, Kang KR, Kim SB, Ji JH, Cho GW, Kang HM, Kang JH.	Clin Exp Vaccine Res	10.7774/cevr.2024.13.2.155	2024
	[Infection by Bordetella pertussis and bordetella parapertussis in cases of suspected whooping cough (2011-2015) in Mar del Plata, Argentina].	Lavayen S, Zotta C, Cepeda M, Lara C, Rearte A, Regueira M.	Rev Peru Med Exp Salud Publica	10.17843/rpmesp.2017.341.2770	2017
	Clinical Evaluation of Acute Exacerbation of Interstitial Lung Disease in a Single Tertiary Center: Perspectives before and after the Coronavirus Disease 2019 Pandemic.	Takagi R, Saraya T, Yamada S, Nakajima K, Doi K, Akizawa T, Ishikawa N, Kurokawa N, Kobayashi F, Nunokawa H, Aso J, Nakamoto Y, Ishida M, Sada M, Honda K, Nakamoto K, Takata S, Ishii H.	J Clin Med	10.3390/jcm13195733	2024
Enzymology	Pertussis epidemiology in Tunisian infants and children and characterization of Bordetella pertussis isolates: results of a 9-year surveillance study, 2007 to 2016.	Ben Fraj I, Kechrid A, Guillot S, Bouchez V, Brisse S, Guiso N, Smaoui H.	J Med Microbiol	10.1099/jmm.0.000892	2019
Genetics	Bordetella parapertussis Bacteremia: Clinical Expression and Bacterial Genomics.	Toubiana J, Azarnoush S, Bouchez V, Landier A, Guillot S, Matczak S, Bonacorsi S, Brisse S.	Open Forum Infect Dis	10.1093/ofid/ofz122	2019
	Changes in virus-related exacerbations of chronic respiratory diseases before and after the relaxation of COVID-19 infection control measures: a single-centre retrospective study in Japan.	Sasada T, Kishi R, Shirakawa C, Hirabayashi R, Sato Y, Nagata K, Nakagawa A, Tomii K, Ariyoshi K, Tachikawa R.	Ther Adv Infect Dis	10.1177/20499361251379981	2025
	Multi-Omics Profiling of Candida albicans Grown on Solid Versus Liquid Media.	Alhameed RA, Semreen MH, Hamad M, Giddey AD, Sulaiman A, Al Bataineh MT, Al-Hroub HM, Bustanji Y, Alzoubi KH, Soares NC.	Microorganisms	10.3390/microorganisms11122831	2023
	Performance comparison of three commercial multiplex molecular panels for respiratory viruses at a South African academic hospital.	van der Westhuizen C, Newton-Foot M, Nel P.	Afr J Lab Med	10.4102/ajlm.v13i1.2415	2024
	Post-COVID-19 pandemic changes in pertussis incidence among patients with acute respiratory tract infections in Zhejiang, China.	Wang H, Fu M, Chen W, Ma Y.	Front Microbiol	10.3389/fmicb.2024.1448997	2024
	Viral Etiologies of Acute Respiratory Illness in Older Adults and of Congestive Heart Failure and Chronic Obstructive Pulmonary Disease Exacerbations Requiring Hospitalization During 2 Prepandemic Respiratory Seasons.	Choi C, Ess G, Tippett A, Salazar L, Taylor EG, Ciric C, Reese O, Cheng A, Gibson T, Li W, Hsiao HM, Hellmeister K, Al-Husein Z, Hubler R, Begier E, Liu Q, Uppal S, Kalina WV, Gessner B, Jodar L, Kamidani S, Kao C, Yildirim I, Anderson LJ, Rouphael N, Anderson EJ, Rostad CA.	Open Forum Infect Dis	10.1093/ofid/ofaf366	2025
	COVID-19 associated Kawasaki-like multisystem inflammatory syndrome in an adult.	Elouardi Y, Rebahi H, Zarrouki Y, Ziadi A, Younous S, Samkaoui MA.	Rev Esp Anestesiol Reanim (Engl Ed)	10.1016/j.redare.2020.11.009	2022
	Characteristics of plastic bronchitis in children with infectious pneumonia.	Cai X, Lin M, Zhou L, Sheng W, Jiao W, Bian H, Yin T.	Ital J Pediatr	10.1186/s13052-025-01873-4	2025
	Patterns of Non-influenza Respiratory Viruses Among Severe Acute Respiratory Infection Cases in Burkina Faso: A Surveillance Study.	Lingani M, Cisse A, Ilboudo AK, Yameogo I, Tarnagada Z.	Influenza Other Respir Viruses	10.1111/irv.13271	2024
Phylogeny	Comparative Clinical Evaluation of NeoPlex RB-8 with Seeplex PneumoBacter ACE for Simultaneous Detection of Eight Respiratory Bacterial Pathogens.	Kim JW, Hong SS, Lee IS, Chi HY, Kim SO, Kim HN, Hong SP.	J Clin Microbiol	10.1128/jcm.01500-19	2020
	Seroepidemiology of pertussis in the east of China: Estimates of incidence of infection in adolescents and adults pre- and post-COVID-19.	Chen Q, Wang W, Shi X, Xu Y, Zhu Y, Wu Y, Wang Z, Sun H, Sun X.	Front Public Health	10.3389/fpubh.2022.1054617	2022
	Comparison of the BioFire Joint Infection Panel to 16S Ribosomal RNA Gene-Based Targeted Metagenomic Sequencing for Testing Synovial Fluid from Patients with Knee Arthroplasty Failure.	Azad MA, Wolf MJ, Strasburg AP, Daniels ML, Starkey JC, Donadio AD, Abdel MP, Greenwood-Quaintance KE, Patel R.	J Clin Microbiol	10.1128/jcm.01126-22	2022
	Description of pathogenic bacteria in patients with respiratory symptoms associated with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in Colombia.	Zuluaga N, Martinez D, Hernandez C, Ballesteros N, Castaneda S, Ramirez JD, Munoz M.	Ann Clin Microbiol Antimicrob	10.1186/s12941-023-00595-x	2023
Metabolism	The virulence regulator bvgS controls nutrient-induced filamentation in Bordetella avium.	Perslow NG, Meadows-Graves SJ, Luallen RJ.	J Bacteriol	10.1128/jb.00030-25	2025
	Diagnostic challenges and forensic implications in a case of infantile fatal myocarditis.	Grimaldi F, Bonasoni MP, Pelletti G, Gabrielli L, Pelotti S.	Forensic Sci Med Pathol	10.1007/s12024-023-00659-6	2024
Metabolism	Melanin Produced by Bordetella parapertussis Confers a Survival Advantage to the Bacterium during Host Infection.	Hiramatsu Y, Nishida T, Nugraha DK, Sugihara F, Horiguchi Y.	mSphere	10.1128/msphere.00819-21	2021
	Trend of pathogens and respiratory co-infections in the province of Messina: from pediatric age to senescence.	Genovese C, Gorgone M, Genovese G, LA Spada G, Balsamo D, Calderone SM, Faranda I, Squeri R.	J Prev Med Hyg	10.15167/2421-4248/jpmh2024.65.3.3344	2024
	Prognostic value of upper respiratory tract microbes in children presenting to primary care with respiratory infections: A prospective cohort study.	McGeoch LJ, Thornton HV, Blair PS, Christensen H, Turner NL, Muir P, Vipond B, Redmond NM, Turnbull S, Hay AD.	PLoS One	10.1371/journal.pone.0268131	2022
	Profile of Co-Infection Prevalence and Antibiotics Use among COVID-19 Patients.	Greco R, Panetta V, Della Rocca MT, Durante A, Di Caprio G, Maggi P.	Pathogens	10.3390/pathogens11111250	2022
	Shifting respiratory pathogens: Post-COVID-19 trends in community-acquired infections in underserved communities.	Rafei R, Osman M, Barake BA, Mallat H, Dabboussi F, Hamze M.	PLoS One	10.1371/journal.pone.0329481	2025
	The neglected pathogen: case reports of severe lower respiratory tract infection by human coronavirus 229E.	Paul D, Gupta A, Bhatia V, Gupta E.	Access Microbiol	10.1099/acmi.0.000311	2022
	Croup Associated With SARS-CoV-2: Pediatric Laryngotracheitis During the Omicron Surge.	Sharma S, Agha B, Delgado C, Walson K, Woods C, Gonzalez MD, Jerris R, Sysyn G, Beiter J, Kamidani S, Rostad CA.	J Pediatric Infect Dis Soc	10.1093/jpids/piac032	2022
	The burden of laboratory-confirmed pertussis in low- and middle-income countries since the inception of the Expanded Programme on Immunisation (EPI) in 1974: a systematic review and meta-analysis.	Muloiwa R, Kagina BM, Engel ME, Hussey GD.	BMC Med	10.1186/s12916-020-01699-3	2020
	Prevalence and Seasonal Patterns of 16 Common Viral Respiratory Pathogens during the COVID-19 Pandemic in Gauteng Province, South Africa, 2020-2021.	Reddy B, Simane A, Mthiyane H, Mashishi B, Mbenenge N, Treurnicht FK.	Viruses	10.3390/v16081325	2024
	Identification of priority pathogens for aetiological diagnosis in adults with community-acquired pneumonia in China: a multicentre prospective study.	Zhang L, Xiao Y, Zhang G, Li H, Zhao J, Chen M, Chen F, Liu L, Li Y, Peng L, Zhao F, Yang D, Wen Z, Wu L, Wu S, Sun Y, Wang Y, Chen L, Wang X, Wang L, Li W, Qiu H, Chen Y, Gao Z, Ren L, Wang J.	BMC Infect Dis	10.1186/s12879-023-08166-3	2023
	Bordetella spp. utilize the type 3 secretion system to manipulate the VIP/VPAC2 signaling and promote colonization and persistence of the three classical Bordetella in the lower respiratory tract.	First NJ, Pedreira-Lopez J, San-Silvestre MRF, Parrish KM, Lu XH, Gestal MC.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1111502	2023
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	Epidemiology and molecular characteristics of respiratory syncytial virus (RSV) among italian community-dwelling adults, 2021/22 season.	Panatto D, Domnich A, Lai PL, Ogliastro M, Bruzzone B, Galli C, Stefanelli F, Pariani E, Orsi A, Icardi G.	BMC Infect Dis	10.1186/s12879-023-08100-7	2023
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Enzymology	Whooping cough in Pakistan: Bordetella pertussis vs Bordetella parapertussis in 2005-2009.	Bokhari H, Said F, Syed MA, Mughal A, Kazi YF, Heuvelman K, Mooi FR.	Scand J Infect Dis	10.3109/00365548.2011.577804	2011
Phylogeny	Molecular typing of Bordetella parapertussis isolates circulating in Pakistan.	Bokhari H, Said F, Syed MA, Mughal A, Kazi YF, Kallonen T, He Q, King AJ, Heuvelman K, Mooi FR.	FEMS Immunol Med Microbiol	10.1111/j.1574-695x.2011.00861.x	2011
	Overruling of Procalcitonin-Guided Antibiotics for Lower Respiratory Tract Infections in Primary Care: Ancillary Study of a Randomized Controlled Trial.	Knusli J, Lhopitallier L, Kronenberg A, Meuwly JY, Opota O, Perrenoud MA, Page MA, Kain KC, Mamin A, D'Acremont V, Senn N, Mueller Y, Locatelli I, Boillat-Blanco N.	Antibiotics (Basel)	10.3390/antibiotics12020377	2023
Enzymology	Multicenter Clinical Evaluation of the Automated Aries Bordetella Assay.	Relich RF, Leber A, Young S, Schutzbank T, Dunn R, Farhang J, Uphoff TS.	J Clin Microbiol	10.1128/jcm.01471-18	2019
	Outer-Membrane-Vesicle-Associated O Antigen, a Crucial Component for Protecting Against Bordetella parapertussis Infection.	Bottero D, Zurita ME, Gaillard ME, Carriquiriborde F, Martin Aispuro P, Elizagaray M, Bartel E, Castuma C, Hozbor D.	Front Immunol	10.3389/fimmu.2018.02501	2018
	Modeling the catarrhal stage of Bordetella pertussis upper respiratory tract infections in mice.	Soumana IH, Dewan KK, Linz B, Rivera I, Ma L, Howard LK, Caulfield AD, Sedney CJ, Blas-Machado U, Sebo P, Harvill ET.	Dis Model Mech	10.1242/dmm.049266	2022
	Expert consensus for pertussis in children: new concepts in diagnosis and treatment.	Mi YM, Deng JK, Zhang T, Cao Q, Wang CQ, Ye S, Chen YH, He HQ, Wu BB, Liu Y, Zeng M, Li W, Wu F, Xu HM, Zhao SY, Liu G, Hua W, Xu D, Bai GN, Yang Y, Huang LS, Chen YP, Yao KH, Shao ZJ, Hua CZ.	World J Pediatr	10.1007/s12519-024-00848-5	2024
	The surge of RSV and other respiratory viruses among children during the second COVID-19 pandemic winter season.	Riepl A, Strassmayr L, Voitl P, Ehlmaier P, Voitl JJM, Langer K, Kuzio U, Muhl-Riegler A, Muhl B, Diesner-Treiber SC.	Front Pediatr	10.3389/fped.2023.1112150	2023
Enzymology	Identification of SARS-CoV-2 and Enteroviruses in Sewage Water-A Pilot Study.	Baicus A, Cherciu CM, Lazar M.	Viruses	10.3390/v13050844	2021
	Randomised multicentre effectiveness trial of rapid syndromic testing by panel assay in children presenting to European emergency departments with acute respiratory infections-trial protocol for the ADEQUATE Paediatric trial.	ADEQUATE Paediatric Trial Group.	BMJ Open	10.1136/bmjopen-2023-076338	2024
	Assessing the Underestimation of Adult Pertussis Disease in Five Latin American Countries.	Guzman-Holst A, Gomez JA, Cintra O, Van Oorschot D, Jamet N, Nieto-Guevara J.	Infect Dis Ther	10.1007/s40121-023-00895-x	2023
Genetics	Metagenome analyses of microbial population in geotextile fabrics used in permeable reactor barriers for toluene biodegradation.	Tombuloglu H, Yaman C, Boudellioua I, Cevik E, Anil I, Aga O, Yaman AB, Qureshi A, Gunday ST.	3 Biotech	10.1007/s13205-023-03460-y	2023
	Changes in the Circulation of Common Respiratory Pathogens among Hospitalized Patients with Influenza-like Illnesses in the Lazio Region (Italy) during Fall Season of the Past Three Years.	Sberna G, Lalle E, Valli MB, Bordi L, Garbuglia AR, Amendola A.	Int J Environ Res Public Health	10.3390/ijerph19105962	2022
	Pertussis Prevalence in Adult Population in Greece: A Seroprevalence Nationwide Study.	Papagiannis D, Thireos E, Mariolis A, Katsioulis A, Gartzonika K, Malliaraki N, Agnantis C, Tsaras K, Malli F, Rouka EC, Tsiaousi I, Symvoulakis EK, Rachiotis G, Gourgoulianis KI.	Vaccines (Basel)	10.3390/vaccines10091511	2022
	Etiological distribution of pertussis-like syndrome in 756 children in Chengdu.	Liu Y, Ai T, Fan Y, Xie C, Lou R, Zeng X, Wang L, Peng Y, Chen M.	Transl Pediatr	10.21037/tp-21-140	2021
	What to Do with the New Antibiotics?	Chaibi K, Jaureguy F, Do Rego H, Ruiz P, Mory C, El Helali N, Mrabet S, Mizrahi A, Zahar JR, Pilmis B.	Antibiotics (Basel)	10.3390/antibiotics12040654	2023
	Case-Control Study to Estimate the Association Between Tdap Vaccination During Pregnancy and Reduced Risk of Pertussis in Newborn Infants in Peru, 2019-2021.	Juscamayta-Lopez E, Valdivia F, Soto MP, Horna H, Pajuelo M.	Open Forum Infect Dis	10.1093/ofid/ofad325	2023
	Bordetella bronchiseptica infections in patients with HIV/AIDS: A case report and review of the literature.	Gujju VR, Akram B, Shibib DR, McGhee MA, Drevets DA.	Medicine (Baltimore)	10.1097/md.0000000000028244	2021
	A Patient with Asymptomatic SARS-CoV-2 Infection Who Presented 86 Days Later with COVID-19 Pneumonia Possibly Due to Reinfection with SARS-CoV-2.	Sharma R, Sardar S, Mohammad Arshad A, Ata F, Zara S, Munir W.	Am J Case Rep	10.12659/ajcr.927154	2020
	The challenges of treating tracheobronchitis in a laryngectomee due to nontypeable Haemophilus influenzae: a case report.	Brook I.	J Med Case Rep	10.1186/s13256-018-1764-2	2018
	Circulating pediatric respiratory pathogens in Taiwan during 2020: Dynamic change under low COVID-19 incidence.	Sim JY, Chen YC, Hsu WY, Chen WY, Chou Y, Chow JC, Lai YC, Tang HJ, Chen CC, Ho CH, Chang TH.	J Microbiol Immunol Infect	10.1016/j.jmii.2022.03.005	2022
	Protective effects of vaccines against Bordetella parapertussis in a mouse intranasal challenge model.	Komatsu E, Yamaguchi F, Eguchi M, Watanabe M.	Vaccine	10.1016/j.vaccine.2010.04.053	2010
	Triplex real-time PCR assay for detection and differentiation of Bordetella pertussis and Bordetella parapertussis.	Xu Y, Xu Y, Hou Q, Yang R, Zhang S.	APMIS	10.1111/j.1600-0463.2010.02644.x	2010
Enzymology	Real-time PCR-based detection of Bordetella pertussis and Bordetella parapertussis in an Irish paediatric population.	Grogan JA, Logan C, O'Leary J, Rush R, O'Sullivan N.	J Med Microbiol	10.1099/jmm.0.030049-0	2011
	Assessing respiratory viral exclusion and affinity interactions through co-infection incidence in a pediatric population during the 2022 resurgence of influenza and RSV.	Weidmann MD, Green DA, Berry GJ, Wu F.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1208235	2023
	Predictors of severity and prolonged hospital stay of viral acute respiratory infections (ARI) among children under five years in Burkina Faso, 2016-2019.	Ilboudo AK, Cisse A, Milucky J, Tialla D, Mirza SA, Diallo AO, Bicaba BW, Charlemagne KJ, Diagbouga PS, Owusu D, Waller JL, Talla-Nzussouo N, Charles MD, Whitney CG, Tarnagda Z.	BMC Infect Dis	10.1186/s12879-024-09219-x	2024
Phylogeny	Occurrence of 3 Bordetella species during an outbreak of cough illness in Ohio: epidemiology, clinical features, laboratory findings and antimicrobial susceptibility.	Spicer KB, Salamon D, Cummins C, Leber A, Rodgers LE, Marcon MJ.	Pediatr Infect Dis J	10.1097/inf.0000000000000262	2014
Enzymology	Evaluation of PCR methods for the diagnosis of pertussis by the European surveillance network for vaccine-preventable diseases (EUVAC.NET).	Dalby T, Fry NK, Krogfelt KA, Jensen JS, He Q, pertussis EQA participants.	Eur J Clin Microbiol Infect Dis	10.1007/s10096-013-1874-0	2013
	Mycoplasma pneumoniae may cause dyspnoea and hospitalisations in young healthy adults.	Metsala R, Ala-Korpi S, Rannikko J, Helminen M, Renko M.	Eur J Clin Microbiol Infect Dis	10.1007/s10096-021-04171-z	2021
	Neurologic alterations in an HIV adult patient with pertussis: a case report.	Arango-Granados MC, Trompa IM.	BMC Infect Dis	10.1186/s12879-020-05198-x	2020
	Comparative Phosphoproteomics of Classical Bordetellae Elucidates the Potential Role of Serine, Threonine and Tyrosine Phosphorylation in Bordetella Biology and Virulence.	Luu LDW, Zhong L, Kaur S, Raftery MJ, Lan R.	Front Cell Infect Microbiol	10.3389/fcimb.2021.660280	2021
	Sero and Carriage Epidemiology of Pertussis in Urban and Rural Regions in Vietnam.	Toizumi M, Le LT, Nguyen HAT, Le TTT, Kitamura N, Bui LX, Ho NM, Do HT, Kamachi K, Otsuka N, Bui MX, Dang DA, Yoshida LM.	Vaccines (Basel)	10.3390/vaccines12030225	2024
	Clonal expansion of CD4⁺CD8⁺ T cells in an adult patient with Mycoplasma pneumoniae-associated Erythema multiforme majus.	Volkers SM, Meisel C, Terhorst-Molawi D, Burbach GJ, Schurmann D, Suttorp N, Sander LE.	Allergy Asthma Clin Immunol	10.1186/s13223-021-00520-x	2021
	Viral Pneumonia during the COVID-19 Pandemic, 2019-2021 Evoking Needs for SARS-CoV-2 and Additional Vaccinations.	Lin SC, Wang HC, Lin WC, Kuo YT, Hsu YH, Tsai YT, Lu SC, Wang YH, Chen SY.	Vaccines (Basel)	10.3390/vaccines11050905	2023
Phylogeny	Monitoring of Bordetella isolates circulating in Saint Petersburg, Russia between 2001 and 2009.	Kurova N, Njamkepo E, Brun D, Tseneva G, Guiso N.	Res Microbiol	10.1016/j.resmic.2010.09.013	2010
	COVID-19 in Infants and Children under 2 Years-Could Lung Ultrasound Score Be Correlated with Biomarkers and Symptoms?	Stoicescu ER, Lovrenski J, Iacob R, Cerbu S, Iacob D, Iacob ER, Susa SR, Ciuca IM, Bolintineanu Ghenciu LA, Ciornei-Hoffman A, Oancea C, Manolescu DL.	Biomedicines	10.3390/biomedicines11102620	2023
	Multiplex PCR Detection of Respiratory Tract Infections in SARS-CoV-2-Negative Patients Admitted to the Emergency Department: an International Multicenter Study during the COVID-19 Pandemic.	Duclos M, Hommel B, Allantaz F, Powell M, Posteraro B, Sanguinetti M.	Microbiol Spectr	10.1128/spectrum.02368-22	2022
	Complete Bordetella avium, Bordetella hinzii and Bordetella trematum lipid A structures and genomic sequence analyses of the loci involved in their modifications.	Novikov A, Shah NR, AlBitar-Nehme S, Basheer SM, Trento I, Tirsoaga A, Moksa M, Hirst M, Perry MB, Hamidi AE, Fernandez RC, Caroff M.	Innate Immun	10.1177/1753425913506950	2014
Enzymology	Widespread Bordetella parapertussis Infections-Wisconsin, 2011-2012: Clinical and Epidemiologic Features and Antibiotic Use for Treatment and Prevention.	Koepke R, Bartholomew ML, Eickhoff JC, Ayele RA, Rodd D, Kuennen J, Rosekrans J, Warshauer DM, Conway JH, Davis JP.	Clin Infect Dis	10.1093/cid/civ514	2015
	What happened to microbiological diagnosis in 2020 beyond COVID-19?	Cercenado E.	Rev Esp Quimioter	10.37201/req/s01.01.2021	2021
	Rapid multiplex PCR assays in patients with respiratory viral infections: is semi-quantitative data useful? A pilot study.	Gazeau P, Vallet S, Ansart S, Beauruelle C, Tran-Minoui A, Payan C, Pilorge L.	Braz J Microbiol	10.1007/s42770-021-00536-w	2021
	Mesenchymal stem cell treatment in a critically ill COVID-19 patient: a case report.	Zengin R, Beyaz O, Koc ES, Akinci IO, Kocagoz S, Sagcan G, Ovali E, Cuhadaroglu C.	Stem Cell Investig	10.21037/sci-2020-024	2020
	Dual mechanism of protection by live attenuated Bordetella pertussis BPZE1 against Bordetella bronchiseptica in mice.	Kammoun H, Feunou PF, Foligne B, Debrie AS, Raze D, Mielcarek N, Locht C.	Vaccine	10.1016/j.vaccine.2012.07.005	2012
	Pathogen analysis of pertussis-like syndrome in children.	Gu W, Wang K, Zhang X, Hao C, Lu Y, Wu M, Chen S, He Y, Xu J, Shao X, Wang Y.	BMC Infect Dis	10.1186/s12879-020-05074-8	2020
Genetics	Genomic analysis of the adenylate cyclase-hemolysin C-terminal region of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica.	Chenal-Francisque V, Caro V, Boursaux-Eude C, Guiso N.	Res Microbiol	10.1016/j.resmic.2009.03.006	2009
Enzymology	Sensitivity and specificity of the World Health Organization pertussis clinical case definition.	Ghanaie RM, Karimi A, Sadeghi H, Esteghamti A, Falah F, Armin S, Fahimzad A, Shamshiri A, Kahbazi M, Shiva F.	Int J Infect Dis	10.1016/j.ijid.2010.07.005	2010
	Identification of Cell-Attachment Factors Derived from Green Algal Cells Disrupted by Sonication in Fabrication of Cell Plastics.	Nakanishi A, Nemoto S, Yamamoto N, Iritani K, Watanabe M.	Bioengineering (Basel)	10.3390/bioengineering10080893	2023
Phenotype	BvgR is important for virulence-related phenotypes in Bordetella bronchiseptica.	Gutierrez MdlP, Damron FH, Sisti F, Fernandez J.	Microbiol Spectr	10.1128/spectrum.00794-24	2024
	Respiratory co-infections with COVID-19 in the Veterans Health Administration, 2020.	Schirmer P, Lucero-Obusan C, Sharma A, Sohoni P, Oda G, Holodniy M.	Diagn Microbiol Infect Dis	10.1016/j.diagmicrobio.2021.115312	2021
	Bacterial nasopharyngeal colonisation in children in South Africa before and during the COVID-19 pandemic: an observational study.	Olwagen CP, Downs SL, Izu A, Tharasimbi L, Van Der Merwe L, Nunes MC, Madhi SA.	Lancet Microbe	10.1016/s2666-5247(23)00260-4	2024
	Impact of a Rapid Diagnostic Meningitis/Encephalitis Panel on Antimicrobial Use and Clinical Outcomes in Children.	McDonald D, Gagliardo C, Chiu S, Di Pentima MC.	Antibiotics (Basel)	10.3390/antibiotics9110822	2020
	Detection of respiratory pathogens by application of multiplex PCR panel during early period of COVID-19 pandemic in a tertiary hospital in Central Taiwan.	Chiu YT, Tien N, Lin HC, Wei HM, Lai HC, Chen JA, Low YY, Lin HH, Hsu YL, Hwang KP.	J Microbiol Immunol Infect	10.1016/j.jmii.2021.09.011	2022
	Effectiveness of one and two doses of acellular pertussis vaccines against laboratory-confirmed pertussis requiring hospitalisation in infants: Results of the PERTINENT sentinel surveillance system in six EU/EEA countries, December 2015 - December 2019.	Merdrignac L, Ait El Belghiti F, Pandolfi E, Acosta L, Fabianova K, Habington A, Garcia Cenoz M, Boas H, Toubiana J, Tozzi AE, Jordan I, Zavadilova J, O'Sullivan N, Navascues A, Flem E, Croci I, Jane M, Krizova P, Cotter S, Fernandino L, Bekkevold T, Munoz-Almagro C, Bacci S, Kramarz P, Kissling E, Savulescu C, Renacoq Group, PERTINENT Group.	Vaccine	10.1016/j.vaccine.2024.02.090	2024
	Impact of rapid molecular testing on diagnosis, treatment and management of community-acquired pneumonia in Norway: a pragmatic randomised controlled trial (CAPNOR).	Serigstad S, Ritz C, Faurholt-Jepsen D, Markussen D, Ebbesen MH, Kommedal O, Bjorneklett RO, Heggelund L, Clark TW, van Werkhoven CH, Knoop ST, Ulvestad E, Grewal HMS, CAPNOR study group.	Trials	10.1186/s13063-022-06467-7	2022
Pathogenicity	Blood or Serum Exposure Induce Global Transcriptional Changes, Altered Antigenic Profile, and Increased Cytotoxicity by Classical Bordetellae.	Gestal MC, Rivera I, Howard LK, Dewan KK, Soumana IH, Dedloff M, Nicholson TL, Linz B, Harvill ET.	Front Microbiol	10.3389/fmicb.2018.01969	2018
Pathogenicity	Highlights of the 14th International Bordetella Symposium.	Munoz Navarrete K, Edwards KM, Mills KHG, Kamanova J, Rodriguez ME, Gorringe A, Preston A, Kampmann B, Gestal MC, Harvill ET, Dubey P, Diavatopoulos DA, Mattoo S, Scanlon KM, Locht C, Sebo P.	mSphere	10.1128/msphere.00189-25	2025
	Itaconate mechanism of action and dissimilation in Mycobacterium tuberculosis.	Priya M, Gupta SK, Koundal A, Kapoor S, Tiwari S, Kidwai S, Sorio de Carvalho LP, Thakur KG, Mahajan D, Sharma D, Kumar Y, Singh R.	Proc Natl Acad Sci U S A	10.1073/pnas.2423114122	2025
Enzymology	Evaluation of 5'-MGB hybridization probes for detection of Bordetella pertussis and Bordetella parapertussis using different real-time PCR instruments.	Afonina I, Metcalf M, Mills A, Mahoney W.	Diagn Microbiol Infect Dis	10.1016/j.diagmicrobio.2007.10.019	2008
Genetics	Whole-Genome Analysis of Influenza A(H3N2) and B/Victoria Viruses Detected in Myanmar during the COVID-19 Pandemic in 2021.	Chon I, Saito R, Kyaw Y, Aye MM, Setk S, Phyu WW, Wagatsuma K, Li J, Sun Y, Otoguro T, Win SMK, Yoshioka S, Win NC, Ja LD, Tin HH, Watanabe H.	Viruses	10.3390/v15020583	2023
	The diagnostic utility of microscopic quality assessment of sputum samples in the era of rapid syndromic PCR testing.	Markussen DL, Ebbesen M, Serigstad S, Knoop ST, Ritz C, Bjorneklett R, Kommedal O, Jenum S, Ulvestad E, Grewal HMS.	Microbiol Spectr	10.1128/spectrum.03002-23	2023
Enzymology	Prevalence of Bordetella pertussis and Bordetella parapertussis in infants presenting to the emergency department with bronchiolitis.	Walsh PF, Kimmel L, Feola M, Tran T, Lim C, De Salvia L, Pusavat J, Michaelson S, Nguyen TA, Emery K, Mordechai E, Adelson ME.	J Emerg Med	10.1016/j.jemermed.2008.04.048	2011
	Characteristics and outcomes of ambulatory patients with suspected COVID-19 at a respiratory referral center.	Guntur VP, Modena BD, Manka LA, Eddy JJ, Liao SY, Goldstein NM, Zelarney P, Horn CA, Keith RC, Make BJ, Petrache I, Wechsler ME.	Respir Med	10.1016/j.rmed.2022.106832	2022
	False-positive SARS-CoV-2 serology in 3 children with Kawasaki disease.	To KK, Chua GT, Kwok KL, Wong JS, Au DCY, Lam YY, Wong WH, Ho MH, Chan GC, Chui CS, Li X, Tung KT, Wong RS, Tso WW, Wong IC, Wong CS, Fong CH, Chan KH, Yuen KY, Ip P, Kwan MY.	Diagn Microbiol Infect Dis	10.1016/j.diagmicrobio.2020.115141	2020
Genetics	Comparative genomics of whole-cell pertussis vaccine strains from India.	Alai S, Ghattargi VC, Gautam M, Patel K, Pawar SP, Dhotre DP, Shaligram U, Gairola S.	BMC Genomics	10.1186/s12864-020-6724-8	2020
Genetics	Characterization of Bordetella pertussis Strains Isolated from India.	Alai S, Gautam M, Palkar S, Oswal J, Gairola S, Dhotre DP.	Pathogens	10.3390/pathogens11070794	2022
	Mobilome Analysis of Achromobacter spp. Isolates from Chronic and Occasional Lung Infection in Cystic Fibrosis Patients.	Veschetti L, Sandri A, Patuzzo C, Melotti P, Malerba G, Lleo MM.	Microorganisms	10.3390/microorganisms9010130	2021
	Pertussis-A Re-Emerging Threat Despite Immunization: An Analysis of Vaccine Effectiveness and Antibiotic Resistance.	Duda-Madej A, Labaz J, Topola E, Bazan H, Viscardi S.	Int J Mol Sci	10.3390/ijms26199607	2025
	Efficient symptomatic treatment and viral load reduction for children with influenza virus infection by nasal-spraying Bacillus spore probiotics.	Tran TT, Phung TTB, Tran DM, Bui HT, Nguyen PTT, Vu TT, Ngo NTP, Nguyen MT, Nguyen AH, Nguyen ATV.	Sci Rep	10.1038/s41598-023-41763-5	2023
Enzymology	A Case of Bordetella brochiseptica at a Military Medical Facility in Hawai'i: Phenotypic and Molecular Testing of an Uncommon Human Pathogen.	Washington MA, Agee WA, Kajiura L, Hawley-Molloy JS, Staege CM, Barnhill JC.	Hawaii J Med Public Health		2015
	Function-specific accelerations in rates of sequence evolution suggest predictable epistatic responses to reduced effective population size.	Warnecke T, Rocha EP.	Mol Biol Evol	10.1093/molbev/msr054	2011
	The impact of pertussis in infants: insights from a hospital-based enhanced surveillance system, Lazio region, Italy, 2016 to 2019.	Pandolfi E, Gesualdo F, Rizzo C, Russo L, Campagna I, Carloni E, Concato C, Linardos G, Villani A, Ciampini S, Reale A, Boccuzzi E, Midulla F, Tozzi AE.	Euro Surveill	10.2807/1560-7917.es.2021.26.24.2000562	2021
	Infection with Bordetella parapertussis but not Bordetella pertussis causes pertussis-like disease in older pigs.	Elahi S, Thompson DR, Strom S, O'Connor B, Babiuk LA, Gerdts V.	J Infect Dis	10.1086/589713	2008
Genetics	Optimization of sample preparation for culture-independent sequencing of Bordetella pertussis.	Fong W, Rockett R, Timms V, Sintchenko V.	Microb Genom	10.1099/mgen.0.000332	2020
	Development of a loop-mediated isothermal amplification (LAMP)-based electrochemical test for rapid detection of SARS-CoV-2.	Borah Slater K, Ahmad M, Poirier A, Stott A, Siedler BS, Brownsword M, Mehat J, Urbaniec J, Locker N, Zhao Y, La Ragione R, Silva SRP, McFadden J.	iScience	10.1016/j.isci.2023.107570	2023
	Pertussis Reinfection in an Adult: A Cause of Persistent Cough Not to Be Ignored.	Koufakis T, Paschala A, Siapardanis D.	Case Rep Infect Dis	10.1155/2017/4786141	2017
	Clinical evaluation of a new rapid immunochromatographic test for detection of Bordetella pertussis antigen.	Okada K, Horikoshi Y, Nishimura N, Ishii S, Nogami H, Motomura C, Miyairi I, Tsumura N, Mori T, Ito K, Honma S, Nagai K, Tanaka H, Hayakawa T, Abe C, Ouchi K.	Sci Rep	10.1038/s41598-022-11933-y	2022
Enzymology	Development of a real-time PCR for the identification of Bordetella pertussis and Bordetella parapertussis.	Menard A, Lehours P, Sarlangue J, Bebear C, Megraud F, de Barbeyrac B.	Clin Microbiol Infect	10.1111/j.1469-0691.2006.01659.x	2007
Metabolism	Crystal structure of XCC3289 from Xanthomonas campestris: homology with the N-terminal substrate-binding domain of Lon peptidase.	Singh R, Deshmukh S, Kumar A, Goyal VD, Makde RD.	Acta Crystallogr F Struct Biol Commun	10.1107/s2053230x20011875	2020
Pathogenicity	Lipopolysaccharides from Bordetella pertussis and Bordetella parapertussis differently modulate human dendritic cell functions resulting in divergent prevalence of Th17-polarized responses.	Fedele G, Nasso M, Spensieri F, Palazzo R, Frasca L, Watanabe M, Ausiello CM.	J Immunol	10.4049/jimmunol.181.1.208	2008
	Spontaneous Acute Subdural Hemorrhage in a Patient with a Tick Borne Bunyavirus-Induced Severe Fever with Thrombocytopenia Syndrome.	Yoo J, Oh JW, Jang CG, Moon JH, Kim EH, Chang JH, Kim SH, Kang SG.	Korean J Neurotrauma	10.13004/kjnt.2017.13.1.57	2017
	Diagnostic limitations of clinical case definitions of pertussis in infants and children with severe lower respiratory tract infection.	Muloiwa R, Nicol MP, Hussey GD, Zar HJ.	PLoS One	10.1371/journal.pone.0235703	2020
	A high seroprevalence of antibodies to pertussis toxin among Japanese adults: Qualitative and quantitative analyses.	Moriuchi T, Otsuka N, Hiramatsu Y, Shibayama K, Kamachi K.	PLoS One	10.1371/journal.pone.0181181	2017
	Rapid diagnostics to enhance therapy selection for the treatment of bacterial infections.	Ryu H, Abdul Azim A, Bhatt PJ, Uprety P, Mohayya S, Dixit D, Kirn TJ, Narayanan N.	Curr Pharmacol Rep	10.1007/s40495-023-00323-1	2023
	A case of acute disseminated encephalomyelitis following Mycoplasma pneumoniae infection.	Laila A, El-Lababidi RM, Hisham M, Mooty M.	IDCases	10.1016/j.idcr.2018.03.003	2018
	Therapeutic effect of vitamin K1 combined with meropenem on the treatment of pertussis syndrome.	Chen W, Guo Y.	Exp Ther Med	10.3892/etm.2019.7586	2019
Enzymology	Analysis of the effects of storage temperature and contamination on aerobic bacterial culture results of bronchoalveolar lavage fluid.	Curran M, Boothe DM, Hathcock TL, Lee-Fowler T.	J Vet Intern Med	10.1111/jvim.15686	2020
	The Etiology of Community-Acquired Pneumonia Correlates with Serum Inflammatory Markers in Children.	Wrotek A, Robakiewicz J, Pawlik K, Rudzinski P, Pilarska I, Jaron A, Imielowska A, Jarzebowska M, Zablocka K, Jackowska T.	J Clin Med	10.3390/jcm11195506	2022
Genetics	Species Identification and Antibiotic Resistance Prediction by Analysis of Whole-Genome Sequence Data by Use of ARESdb: an Analysis of Isolates from the Unyvero Lower Respiratory Tract Infection Trial.	Ferreira I, Beisken S, Lueftinger L, Weinmaier T, Klein M, Bacher J, Patel R, von Haeseler A, Posch AE.	J Clin Microbiol	10.1128/jcm.00273-20	2020
Phylogeny	Development and evaluation of dual-target real-time polymerase chain reaction assays to detect Bordetella spp.	Tatti KM, Wu KH, Tondella ML, Cassiday PK, Cortese MM, Wilkins PP, Sanden GN.	Diagn Microbiol Infect Dis	10.1016/j.diagmicrobio.2008.02.017	2008
Enzymology	Bordetella parapertussis outbreak in Bisham, Pakistan in 2009-2010: fallout of the 9/11 syndrome.	Javed S, Said F, Eqani SA, Bokhari H.	Epidemiol Infect	10.1017/s0950268814003732	2015
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	Detection of Respiratory Pathogens Does Not Predict Risks After Outpatient Adenotonsillectomy.	Vickers DM, Reddy A, Akmyradov C, Brown KM, Boyanton BL, Wright HD, Taylor JA, Childress SH, Hartzell LD, Johnson AB, Key JM, Nolder AR, Richter GT, Wineland AM, Strub GM.	Laryngoscope	10.1002/lary.29236	2021
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Metabolism	Complete structures of Bordetella bronchiseptica and Bordetella parapertussis lipopolysaccharides.	Preston A, Petersen BO, Duus JO, Kubler-Kielb J, Ben-Menachem G, Li J, Vinogradov E.	J Biol Chem	10.1074/jbc.m513904200	2006
Pathogenicity	In Vitro Antibacterial Properties of Cefiderocol, a Novel Siderophore Cephalosporin, against Gram-Negative Bacteria.	Ito A, Sato T, Ota M, Takemura M, Nishikawa T, Toba S, Kohira N, Miyagawa S, Ishibashi N, Matsumoto S, Nakamura R, Tsuji M, Yamano Y.	Antimicrob Agents Chemother	10.1128/aac.01454-17	2018
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	The occurrence of and risk factors for developing acute critical illness during quarantine as a response to the COVID-19 pandemic.	Tsai CS, Huang TH, Su PL, Chen CZ, Chen CW, Ko WC, Lee NY.	J Formos Med Assoc	10.1016/j.jfma.2021.01.013	2022
	Characteristics, Outcomes, and Factors Affecting Mortality in Hospitalized Patients with CAP Due to Different Variants of SARS-CoV-2 and Non-COVID-19 CAP.	Tongsengkee N, Surasombatpattana S, Tanomkiat W, Siripaitoon P, Kositpantawong N, Kanchanasuwan S, Navasakulpong A, Pinpathomrat N, Dechaphunkul A, Phongphithakchai A, Hortiwakul T, Charoenmak B, Chusri S.	J Clin Med	10.3390/jcm12041388	2023
	Detection of SARS-CoV-2 and Other Infectious Agents in Lower Respiratory Tract Samples Belonging to Patients Admitted to Intensive Care Units of a Tertiary-Care Hospital, Located in an Epidemic Area, during the Italian Lockdown.	Calderaro A, Buttrini M, Montecchini S, Piccolo G, Martinelli M, Dell'Anna ML, Di Maio A, Arcangeletti MC, Maccari C, De Conto F, Chezzi C.	Microorganisms	10.3390/microorganisms9010185	2021
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Metabolism	A multiplex PCR assay for the detection of respiratory bacteriae in nasopharyngeal smears from children with acute respiratory disease.	Geertsen R, Kaeppeli F, Sterk-Kuzmanovic N, Andrasevic S, Anic-Milic T, Dobec M.	Scand J Infect Dis	10.1080/00365540701367736	2007
Enzymology	Detection of Pathogenic Viruses in the Ambient Air in Seoul, Korea.	Han TH, Park SH, Chung JY, Jeong HW, Jung J, Lee JI, Hwang YO, Kim IY, Lee JH, Jung K.	Food Environ Virol	10.1007/s12560-018-9348-2	2018
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Enzymology	Severe pneumonia in a street rat (Rattus norvegicus) caused by Rodentibacter rarus strain RMC2.	Medkour H, Laidoudi Y, Dahmana H, Salvi B, Lepidi H, Mediannikov O, Davoust B.	Open Vet J	10.4314/ovj.v11i1.24	2021
Enzymology	Epidemiology and characterization of Bordetella parapertussis strains isolated between 1995 and 2002 in and around Warsaw, Poland.	Letowska I, Hryniewicz W.	Eur J Clin Microbiol Infect Dis	10.1007/s10096-004-1141-5	2004
	Population-Based Pertussis Incidence and Risk Factors in Infants Less Than 6 Months in Nepal.	Hughes MM, Englund JA, Kuypers J, Tielsch JM, Khatry SK, Shrestha L, LeClerq SC, Steinhoff M, Katz J.	J Pediatric Infect Dis Soc	10.1093/jpids/piw079	2017
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	Membrane Vesicles Derived from Bordetella bronchiseptica: Active Constituent of a New Vaccine against Infections Caused by This Pathogen.	Bottero D, Zurita ME, Gaillard ME, Bartel E, Vercellini C, Hozbor D.	Appl Environ Microbiol	10.1128/aem.01877-17	2018
	PAU-1, a Novel Plasmid-Encoded Ambler Class A beta-Lactamase Identified in a Clinical Pseudomonas aeruginosa Isolate.	Wang J, Xu T, Ying J, Zhou W, Chen Q, Qian C, Zhu X, Shen K, Li P, Li K, Bao Q, Lu J.	Infect Drug Resist	10.2147/idr.s225288	2019
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	Whooping cough due to Bordetella parapertussis: an unresolved problem.	Watanabe M, Nagai M.	Expert Rev Anti Infect Ther	10.1586/14787210.2.3.447	2004
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	Host Specificity of Ovine Bordetella parapertussis and the Role of Complement.	Hester SE, Goodfield LL, Park J, Feaga HA, Ivanov YV, Bendor L, Taylor DL, Harvill ET.	PLoS One	10.1371/journal.pone.0130964	2015
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	Clinical implications of rapid ePlex® Respiratory Pathogen Panel testing compared to laboratory-developed real-time PCR.	van Rijn AL, Nijhuis RHT, Bekker V, Groeneveld GH, Wessels E, Feltkamp MCW, Claas ECJ.	Eur J Clin Microbiol Infect Dis	10.1007/s10096-017-3151-0	2018
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Enzymology	Comparison of molecular detection methods for pertussis in children during a state-wide outbreak.	Qin X, Zerr DM, Kronman MP, Adler AL, Berry JE, Rich S, Buccat AM, Xu M, Englund JA.	Ann Clin Microbiol Antimicrob	10.1186/s12941-016-0142-4	2016
	Role of PCR in the diagnosis of pertussis infection in infants: 5 years' experience of provision of a same-day real-time PCR service in England and Wales from 2002 to 2007.	Fry NK, Duncan J, Wagner K, Tzivra O, Doshi N, Litt DJ, Crowcroft N, Miller E, George RC, Harrison TG.	J Med Microbiol	10.1099/jmm.0.009878-0	2009
	Comparison of performance between Fast Track Diagnostics Respiratory Kit and the CDC global reference laboratory for influenza rRT-PCR panel for detection of influenza A and influenza B.	Cisse A, Milucky J, Ilboudo AK, Waller JL, Bicaba B, Medah I, Mirza S, Whitney CG, Tarnagda Z.	Influenza Other Respir Viruses	10.1111/irv.12830	2021
	The structure of the core-O-chain linkage region of the lipopolysaccharide from Bordetella hinzii.	Vinogradov E.	Carbohydr Res	10.1016/j.carres.2006.10.025	2007
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Metabolism	Bordetella iron transport and virulence.	Brickman TJ, Anderson MT, Armstrong SK.	Biometals	10.1007/s10534-006-9031-1	2007
	Divergent dynamics of inflammatory mediators and multiplex PCRs during airway infection in cystic fibrosis patients and healthy controls: Serial upper airway sampling by nasal lavage.	Erdmann N, Schilling T, Hentschel J, Lehmann T, von Bismarck P, Ankermann T, Duckstein F, Baier M, Zagoya C, Mainz JG.	Front Immunol	10.3389/fimmu.2022.947359	2022
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Enzymology	Comparison of culture and PCR for detection of Bordetella pertussis and Bordetella parapertussis under routine laboratory conditions.	Dragsted DM, Dohn B, Madsen J, Jensen JS.	J Med Microbiol	10.1099/jmm.0.45585-0	2004
Phylogeny	IEIIS Meeting minireview: Bordetella evolution: lipid A and Toll-like receptor 4.	MacArthur I, Mann PB, Harvill ET, Preston A.	J Endotoxin Res	10.1177/0968051907082609	2007
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	PFGE and pertactin gene sequencing suggest limited genetic variability within the Finnish Bordetella parapertussis population.	Makinen J, Mertsola J, Soini H, Arvilommi H, Viljanen MK, Guiso N, He Q.	J Med Microbiol	10.1099/jmm.0.05434-0	2003
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	Starting from scratch: Step-by-step development of diagnostic tests for SARS-CoV-2 detection by RT-LAMP.	Tapia-Sidas DA, Vargas-Hernandez BY, Ramirez-Pool JA, Nunez-Munoz LA, Calderon-Perez B, Gonzalez-Gonzalez R, Brieba LG, Lira-Carmona R, Ferat-Osorio E, Lopez-Macias C, Ruiz-Medrano R, Xoconostle-Cazares B.	PLoS One	10.1371/journal.pone.0279681	2023
Metabolism	Structural mechanism for regulation of DNA binding of BpsR, a Bordetella regulator of biofilm formation, by 6-hydroxynicotinic acid.	Booth WT, Davis RR, Deora R, Hollis T.	PLoS One	10.1371/journal.pone.0223387	2019
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Enzymology	The 2009 pandemic influenza A(H1N1) coincides with changes in the epidemiology of other viral pathogens causing acute respiratory tract infections in children.	Grondahl B, Ankermann T, von Bismarck P, Rockahr S, Kowalzik F, Gehring S, Meyer C, Knuf M, Puppe W.	Infection	10.1007/s15010-013-0545-5	2014
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	Studying the clinical, radiological, histological, microbiological, and immunological evolution during the different COVID-19 disease stages using minimal invasive autopsy.	D'Onofrio V, Keulen L, Vandendriessche A, Dubois J, Cartuyvels R, Vanden Abeele ME, Fraussen J, Vandormael P, Somers V, Achten R, Dendooven A, Driessen A, Augsburg L, Hellings N, Lammens M, Vanrusselt J, Cox J.	Sci Rep	10.1038/s41598-022-05186-y	2022
Enzymology	Description of a multiplex Bordetella pertussis and Bordetella parapertussis LightCycler PCR assay with inhibition control.	Cloud JL, Hymas WC, Turlak A, Croft A, Reischl U, Daly JA, Carroll KC.	Diagn Microbiol Infect Dis	10.1016/s0732-8893(03)00045-2	2003
	Rapid syndromic PCR testing in patients with respiratory tract infections reduces time to results and improves microbial yield.	Serigstad S, Markussen D, Grewal HMS, Ebbesen M, Kommedal O, Heggelund L, van Werkhoven CH, Faurholt-Jepsen D, Clark TW, Ritz C, Ulvestad E, Bjorneklett R, Knoop ST, CAPNOR Study Group.	Sci Rep	10.1038/s41598-021-03741-7	2022
	Effects of race on the outcome of COVID-19 in hospitalized patients.	Abate G, Kapoor A, Charbek E, Beck B, Wang Q, Wang GC, Steck M, Zoglman J, Chambeg RR, Frey S, Hoft DF, Wiemken TL.	J Natl Med Assoc	10.1016/j.jnma.2021.12.002	2022
	Performance of 22 Rapid Lateral Flow Tests for SARS-CoV-2 Antigen Detection and Influence of "Variants of Concern": Implications for Clinical Use.	Gourgeon A, Soulier A, Audureau E, Khouider S, Galbin A, Langlois C, Bouvier-Alias M, Rodriguez C, Chevaliez S, Pawlotsky JM, Fourati S.	Microbiol Spectr	10.1128/spectrum.01157-22	2022
Metabolism	Bordetella parapertussis PagP mediates the addition of two palmitates to the lipopolysaccharide lipid A.	Hittle LE, Jones JW, Hajjar AM, Ernst RK, Preston A.	J Bacteriol	10.1128/jb.02236-14	2015
	The clinical impact of PCR-based point-of-care diagnostic in respiratory tract infections in children.	Reischl AT, Schreiner D, Poplawska K, Kidszun A, Zepp F, Grondahl B, Gehring S.	J Clin Lab Anal	10.1002/jcla.23203	2020
Metabolism	Bordetella parapertussis survives the innate interaction with human neutrophils by impairing bactericidal trafficking inside the cell through a lipid raft-dependent mechanism mediated by the lipopolysaccharide O antigen.	Gorgojo J, Lamberti Y, Valdez H, Harvill ET, Rodriguez ME.	Infect Immun	10.1128/iai.00662-12	2012
	Determination of serum antibody to Bordetella pertussis adenylate cyclase toxin in vaccinated and unvaccinated children and in children and adults with pertussis.	Cherry JD, Xing DX, Newland P, Patel K, Heininger U, Corbel MJ.	Clin Infect Dis	10.1086/381204	2004
	Acellular pertussis vaccination facilitates Bordetella parapertussis infection in a rodent model of bordetellosis.	Long GH, Karanikas AT, Harvill ET, Read AF, Hudson PJ.	Proc Biol Sci	10.1098/rspb.2010.0010	2010
	High antibiotic prescription rates in hospitalized children with human metapneumovirus infection in comparison to RSV infection emphasize the value of point-of-care diagnostics.	Schreiner D, Groendahl B, Puppe W, Off HNT, Poplawska K, Knuf M, Meyer CU, Reischl AT, Gehring S.	Infection	10.1007/s15010-018-1194-5	2019
	The burden of pertussis in low- and middle-income countries since the inception of the Expanded Programme on Immunization (EPI) in 1974: a systematic review protocol.	Muloiwa R, Kagina BM, Engel ME, Hussey GD.	Syst Rev	10.1186/s13643-015-0053-z	2015
	Clinical and radiological findings of adult hospitalized patients with community-acquired pneumonia from SARS-CoV-2 and endemic human coronaviruses.	Baek MS, Cha MJ, Kim MC, Chung JW, Kim WY, Choi H, Choi SH.	PLoS One	10.1371/journal.pone.0245547	2021
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	Functional characterization of the BvgAS two-component system of Bordetella holmesii.	Gerlach G, Janzen S, Beier D, Gross R.	Microbiology (Reading)	10.1099/mic.0.27432-0	2004
	Adherence of ovine and human Bordetella parapertussis to continuous cell lines and ovine tracheal organ culture.	Lund SJ, Rowe HA, Parton R, Donachie W.	FEMS Microbiol Lett	10.1111/j.1574-6968.2001.tb09469.x	2001
	Inhibition controls for qualitative real-time PCR assays: are they necessary for all specimen matrices?	Buckwalter SP, Sloan LM, Cunningham SA, Espy MJ, Uhl JR, Jones MF, Vetter EA, Mandrekar J, Cockerill FR, Pritt BS, Patel R, Wengenack NL.	J Clin Microbiol	10.1128/jcm.03389-13	2014
Metabolism	BopC is a novel type III effector secreted by Bordetella bronchiseptica and has a critical role in type III-dependent necrotic cell death.	Kuwae A, Matsuzawa T, Ishikawa N, Abe H, Nonaka T, Fukuda H, Imajoh-Ohmi S, Abe A.	J Biol Chem	10.1074/jbc.m512711200	2006
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Genetics	Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica.	Parkhill J, Sebaihia M, Preston A, Murphy LD, Thomson N, Harris DE, Holden MT, Churcher CM, Bentley SD, Mungall KL, Cerdeno-Tarraga AM, Temple L, James K, Harris B, Quail MA, Achtman M, Atkin R, Baker S, Basham D, Bason N, Cherevach I, Chillingworth T, Collins M, Cronin A, Davis P, Doggett J, Feltwell T, Goble A, Hamlin N, Hauser H, Holroyd S, Jagels K, Leather S, Moule S, Norberczak H, O'Neil S, Ormond D, Price C, Rabbinowitsch E, Rutter S, Sanders M, Saunders D, Seeger K, Sharp S, Simmonds M, Skelton J, Squares R, Squares S, Stevens K, Unwin L, Whitehead S, Barrell BG, Maskell DJ.	Nat Genet	10.1038/ng1227	2003
	Hospital-based prospective study of pertussis in infants and close contacts in Tehran, Iran.	Noel G, Lotfi MN, Mirshahvalad S, Mahdi S, Tavel D, Zahraei SM, Ghanaie RM, Heidary T, Goudarzi A, Kazemi A, Karimi A, Nateghian A, Ait-Ahmed M, Guiso N, Shahcheraghi F, Taieb F.	BMC Infect Dis	10.1186/s12879-021-06266-6	2021
	The African Network for Improved Diagnostics, Epidemiology and Management of common infectious Agents.	Schubert G, Achi V, Ahuka S, Belarbi E, Bourhaima O, Eckmanns T, Johnstone S, Kabore F, Kra O, Mendes A, Ouedraogo AS, Poda A, Some AS, Tomczyk S, Couacy-Hymann E, Kayembe JM, Meda N, Muyembe Tamfum JJ, Ouangraoua S, Page N, Venter M, Leendertz FH, Akoua-Koffi C, ANDEMIA consortium.	BMC Infect Dis	10.1186/s12879-021-06238-w	2021
	Enhancement of Bordetella parapertussis infection by Bordetella pertussis in mixed infection of the respiratory tract.	Worthington ZE, Van Rooijen N, Carbonetti NH.	FEMS Immunol Med Microbiol	10.1111/j.1574-695x.2011.00836.x	2011
	Characterization of two Achromobacter xylosoxidans isolates from patients with pertussis-like symptoms.	Orellana-Peralta F, Jacinto M, Pons MJ, Gomes C, Bada C, Reyes I, Del Valle Mendoza J, Ruiz J.	Asian Pac J Trop Med	10.1016/j.apjtm.2015.05.013	2015
	The contribution of BvgR, RisA, and RisS to global gene regulation, intracellular cyclic-di-GMP levels, motility, and biofilm formation in Bordetella bronchiseptica.	Nicholson TL, Waack U, Fleming DS, Chen Q, Miller LC, Merkel TJ, Stibitz S.	Front Microbiol	10.3389/fmicb.2024.1305097	2024
Pathogenicity	In vitro activity of gemifloxacin and other antimicrobial agents against isolates of Bordetella pertussis and Bordetella parapertussis.	Mortensen JE, Rodgers GL.	J Antimicrob Chemother	10.1093/jac/45.suppl_3.47	2000
	Bordetella pertussis in School-Age Children, Adolescents, and Adults: A Systematic Review of Epidemiology, Burden, and Mortality in Africa.	Macina D, Evans KE.	Infect Dis Ther	10.1007/s40121-021-00442-6	2021
Genetics	SkewIT: The Skew Index Test for large-scale GC Skew analysis of bacterial genomes.	Lu J, Salzberg SL.	PLoS Comput Biol	10.1371/journal.pcbi.1008439	2020
	Uptake of vaccination in pregnancy.	Sebghati M, Khalil A.	Best Pract Res Clin Obstet Gynaecol	10.1016/j.bpobgyn.2021.03.007	2021
	Bronchiectasis and cough: An old relationship in need of renewed attention.	Mac Aogain M, Chotirmall SH.	Pulm Pharmacol Ther	10.1016/j.pupt.2019.101812	2019
	Emergence of Kawasaki disease related to SARS-CoV-2 infection in an epicentre of the French COVID-19 epidemic: a time-series analysis.	Ouldali N, Pouletty M, Mariani P, Beyler C, Blachier A, Bonacorsi S, Danis K, Chomton M, Maurice L, Le Bourgeois F, Caseris M, Gaschignard J, Poline J, Cohen R, Titomanlio L, Faye A, Melki I, Meinzer U.	Lancet Child Adolesc Health	10.1016/s2352-4642(20)30175-9	2020
	Study of the Etiology of Acute Respiratory Infections in Children Under 5 Years at the Dr. Agostinho Neto Hospital, Praia, Santiago Island, Cabo Verde.	Correia W, Dorta-Guerra R, Sanches M, Almeida Semedo CJB, Valladares B, de Pina-Araujo IIM, Carmelo E.	Front Pediatr	10.3389/fped.2021.716351	2021
	Structural characterization of Bordetella parapertussis lipid A.	El Hamidi A, Novikov A, Karibian D, Perry MB, Caroff M.	J Lipid Res	10.1194/jlr.m800454-jlr200	2009
	Bordetella parapertussis Circumvents Neutrophil Extracellular Bactericidal Mechanisms.	Gorgojo J, Scharrig E, Gomez RM, Harvill ET, Rodriguez ME.	PLoS One	10.1371/journal.pone.0169936	2017
	Harmonization of Bordetella pertussis real-time PCR diagnostics in the United States in 2012.	Williams MM, Taylor TH, Warshauer DM, Martin MD, Valley AM, Tondella ML.	J Clin Microbiol	10.1128/jcm.02368-14	2015
Enzymology	First report of infectious pericarditis due to Bordetella holmesii in an adult patient with malignant lymphoma.	Nei T, Hyodo H, Sonobe K, Dan K, Saito R.	J Clin Microbiol	10.1128/jcm.06772-11	2012
Phylogeny	Human but not ovine isolates of Bordetella parapertussis are highly clonal as determined by PCR-based RAPD fingerprinting.	Yuk MH, Heininger U, Martinez de Tejada G, Miller JF.	Infection	10.1007/bf02962245	1998
Enzymology	Septic arthritis and osteomyelitis due to Bordetella petrii.	Nogi M, Bankowski MJ, Pien FD.	J Clin Microbiol	10.1128/jcm.02794-14	2015
	Direct detection of SARS-CoV-2 RNA using high-contrast pH-sensitive dyes.	Brown TA, Schaefer KS, Tsang A, Yi HA, Grimm JB, Lemire AL, Jradi FM, Kim C, McGowan K, Ritola K, Armstrong DT, Mostafa HH, Korff W, Vale RD, Lavis LD.	J Biomol Tech	10.7171/jbt.21-3203-007	2021
	Whooping cough caused by Bordetella pertussis and Bordetella parapertussis in an immunized population.	He Q, Viljanen MK, Arvilommi H, Aittanen B, Mertsola J.	JAMA	10.1001/jama.280.7.635	1998
Enzymology	Pertussis outbreak investigation of Mekdela district, South Wollo zone, Amhara region, North-West Ethiopia.	Alamaw SD, Kassa AW, Gelaw YA.	BMC Res Notes	10.1186/s13104-017-2735-1	2017
	Nasal-spraying Bacillus spores as an effective symptomatic treatment for children with acute respiratory syncytial virus infection.	Tran DM, Tran TT, Phung TTB, Bui HT, Nguyen PTT, Vu TT, Ngo NTP, Nguyen MT, Nguyen AH, Nguyen ATV.	Sci Rep	10.1038/s41598-022-16136-z	2022
Pathogenicity	Antibiotic use and prescription and its effects on Enterobacteriaceae in the gut in children with mild respiratory infections in Ho Chi Minh City, Vietnam. A prospective observational outpatient study.	Minh NNQ, Toi PV, Qui LM, Tinh LBB, Ngoc NT, Kim LTN, Uyen NH, Hang VTT, Chinh B'Krong NTT, Tham NT, Khoa TD, Khuong HD, Vi PQ, Phuc NNH, Vien LTM, Pouplin T, Khanh DV, Phuong PN, Lam PK, Wertheim HFL, Campbell JI, Baker S, Parry CM, Bryant JE, Schultsz C, Hung NT, de Jong MD, van Doorn HR.	PLoS One	10.1371/journal.pone.0241760	2020
	Spatio-temporal comparison of pertussis outbreaks in Olmsted County, Minnesota, 2004-2005 and 2012: a population-based study.	Wi CI, Wheeler PH, Kaur H, Ryu E, Kim D, Juhn Y.	BMJ Open	10.1136/bmjopen-2018-025521	2019
Enzymology	Discrimination of Bordetella parapertussis and Bordetella pertussis organisms from clinical isolates by PCR using biotin-labelled oligonucleotide probes.	Muller FM, Heininger U, Schnitzler N, Kockelkorn P, Cloot O, Lorenz C, Haase G.	Mol Cell Probes	10.1006/mcpr.1998.0173	1998
	The filamentous hemagglutinin of Bordetella parapertussis is the major adhesin in the phase-dependent interaction with NCI-H292 human lung epithelial cells.	van den Akker WM.	Biochem Biophys Res Commun	10.1006/bbrc.1998.9610	1998
	Prevalence of Bordetella pertussis and Bordetella parapertussis in Samples Submitted for RSV Screening.	Walsh P, Overmeyer C, Kimmel L, Feola M, Pusavat J, Nguyen TA, Kuan S, Emery K, Rosengreen M, Mordechai E, Adelson ME.	West J Emerg Med		2008
Metabolism	Modulation of the Enzymatic Activity of the Flagellar Lytic Transglycosylase SltF by Rod Components and the Scaffolding Protein FlgJ in Rhodobacter sphaeroides.	Garcia-Ramos M, de la Mora J, Ballado T, Camarena L, Dreyfus G.	J Bacteriol	10.1128/jb.00372-21	2021
	Multicenter evaluation of the QIAstat Respiratory Panel-A new rapid highly multiplexed PCR based assay for diagnosis of acute respiratory tract infections.	Parcina M, Schneider UV, Visseaux B, Jozic R, Hannet I, Lisby JG.	PLoS One	10.1371/journal.pone.0230183	2020
Metabolism	Pathogenicity and virulence of Bordetella pertussis and its adaptation to its strictly human host.	Belcher T, Dubois V, Rivera-Millot A, Locht C, Jacob-Dubuisson F.	Virulence	10.1080/21505594.2021.1980987	2021
Enzymology	Bordetella pertussis, Bordetella parapertussis, Mycoplasma pneumoniae, Chlamydia pneumoniae and persistent cough in children.	Hallander HO, Gnarpe J, Gnarpe H, Olin P.	Scand J Infect Dis	10.1080/00365549950163581	1999
	Overcoming Waning Immunity in Pertussis Vaccines: Workshop of the National Institute of Allergy and Infectious Diseases.	Damron FH, Barbier M, Dubey P, Edwards KM, Gu XX, Klein NP, Lu K, Mills KHG, Pasetti MF, Read RC, Rohani P, Sebo P, Harvill ET.	J Immunol	10.4049/jimmunol.2000676	2020
	Morbidity and Mortality Due to Bordetella pertussis: A Significant Pathogen in West Africa?	Kampmann B, Mackenzie G.	Clin Infect Dis	10.1093/cid/ciw560	2016
Pathogenicity	Comparison of Etest and agar dilution for testing the activity of three macrolides against Bordetella parapertussis.	Hoppe JE, Tschirner T.	Diagn Microbiol Infect Dis	10.1016/s0732-8893(97)89160-2	1997
	IL-10 induction by Bordetella parapertussis limits a protective IFN-gamma response.	Wolfe DN, Karanikas AT, Hester SE, Kennett MJ, Harvill ET.	J Immunol	10.4049/jimmunol.0803045	2010
	Optimizing treatment of respiratory tract infections in nursing homes: Nurse-initiated polymerase chain reaction testing.	Dowson L, Marshall C, Buising K, Friedman ND, Kong DCM, Stuart RL.	Am J Infect Control	10.1016/j.ajic.2019.02.001	2019
Metabolism	Diversity of secretion systems associated with virulence characteristics of the classical bordetellae.	Park J, Zhang Y, Chen C, Dudley EG, Harvill ET.	Microbiology (Reading)	10.1099/mic.0.000197	2015
	Reduction of endotoxicity in Bordetella bronchiseptica by lipid A engineering: Characterization of lpxL1 and pagP mutants.	Perez-Ortega J, Van Harten RM, Van Boxtel R, Plisnier M, Louckx M, Ingels D, Haagsman HP, Tommassen J.	Virulence	10.1080/21505594.2021.1929037	2021
Metabolism	Differential in vitro expression of the brkA gene in Bordetella pertussis and Bordetella parapertussis clinical isolates.	Stefanelli P, Sanguinetti M, Fazio C, Posteraro B, Fadda G, Mastrantonio P.	J Clin Microbiol	10.1128/jcm.00247-06	2006
	Protective role of immunoglobulin G antibodies to filamentous hemagglutinin and pertactin of Bordetella pertussis in Bordetella parapertussis infection.	He Q, Edelman K, Arvilommi H, Mertsola J.	Eur J Clin Microbiol Infect Dis	10.1007/bf01701521	1996
	Current pharmacotherapy of pertussis.	Kerr JR, Preston NW.	Expert Opin Pharmacother	10.1517/14656566.2.8.1275	2001
Metabolism	O antigen protects Bordetella parapertussis from complement.	Goebel EM, Wolfe DN, Elder K, Stibitz S, Harvill ET.	Infect Immun	10.1128/iai.01629-07	2008
	Bordetella spp. block eosinophil recruitment to suppress the generation of early mucosal protection.	First NJ, Parrish KM, Martinez-Perez A, Gonzalez-Fernandez A, Bharrhan S, Woolard M, McLachlan JB, Scott RS, Wang J, Gestal MC.	Cell Rep	10.1016/j.celrep.2023.113294	2023
	Chemical and serological characterization of the Bordetella hinzii lipopolysaccharides.	Aussel L, Chaby R, Le Blay K, Kelly J, Thibault P, Perry MB, Caroff M.	FEBS Lett	10.1016/s0014-5793(00)02181-5	2000
Enzymology	Bordetella parapertussis infections.	Mastrantonio P, Giuliano M, Stefanelli P, Sofia T, De Marzi L, Tarabini G, Quarto M, Moiraghi A.	Dev Biol Stand		1997
	Molecular and functional analysis of the lipopolysaccharide biosynthesis locus wlb from Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica.	Allen AG, Thomas RM, Cadisch JT, Maskell DJ.	Mol Microbiol	10.1046/j.1365-2958.1998.00878.x	1998
Enzymology	Polymerase chain reaction for the identification of Bordetella pertussis and Bordetella parapertussis.	Stefanelli P, Giuliano M, Bottone M, Spigaglia P, Mastrantonio P.	Diagn Microbiol Infect Dis	10.1016/0732-8893(96)00064-8	1996
Pathogenicity	Comparison of media for agar dilution susceptibility testing of Bordetella pertussis and Bordetella parapertussis.	Hoppe JE, Tschirner T.	Eur J Clin Microbiol Infect Dis	10.1007/bf01690992	1995
	Effects of interactions between Pasteurella haemolytica and Bordetella parapertussis on in vitro phagocytosis by lung macrophages.	Hodgson JC, Brennand SE, Porter JF.	Biologicals	10.1006/biol.1996.0045	1996
Enzymology	Chromosome-borne class A BOR-1 beta-Lactamase of Bordetella bronchiseptica and Bordetella parapertussis.	Lartigue MF, Poirel L, Fortineau N, Nordmann P.	Antimicrob Agents Chemother	10.1128/aac.49.6.2565-2567.2005	2005
Phylogeny	A causal relationship between Bordetella pertussis and Bordetella parapertussis infections.	Kawai H, Aoyama T, Murase Y, Tamura C, Imaizumi A.	Scand J Infect Dis	10.3109/00365549609037923	1996
Pathogenicity	Paediatric multisystem inflammatory syndrome temporally associated with SARS-CoV-2 mimicking Kawasaki disease (Kawa-COVID-19): a multicentre cohort.	Pouletty M, Borocco C, Ouldali N, Caseris M, Basmaci R, Lachaume N, Bensaid P, Pichard S, Kouider H, Morelle G, Craiu I, Pondarre C, Deho A, Maroni A, Oualha M, Amoura Z, Haroche J, Chommeloux J, Bajolle F, Beyler C, Bonacorsi S, Carcelain G, Kone-Paut I, Bader-Meunier B, Faye A, Meinzer U, Galeotti C, Melki I.	Ann Rheum Dis	10.1136/annrheumdis-2020-217960	2020
Enzymology	A clinical validation of Bordetella pertussis and Bordetella parapertussis polymerase chain reaction: comparison with culture and serology using samples from patients with suspected whooping cough from a highly immunized population.	van der Zee A, Agterberg C, Peeters M, Mooi F, Schellekens J.	J Infect Dis	10.1093/infdis/174.1.89	1996
Enzymology	Relaxed acyl chain specificity of Bordetella UDP-N-acetylglucosamine acyltransferases.	Sweet CR, Preston A, Toland E, Ramirez SM, Cotter RJ, Maskell DJ, Raetz CR.	J Biol Chem	10.1074/jbc.m201057200	2002
	Seroprevalence study of B. pertussis infection in health care workers in Catalonia, Spain.	Urbiztondo L, Broner S, Costa J, Rocamora L, Bayas JM, Campins M, Esteve M, Borras E, Dominguez A, For The Study Of The Immune Status In Health Care TW.	Hum Vaccin Immunother	10.4161/hv.36167	2015
Phylogeny	Differentiation between human and ovine isolates of Bordetella parapertussis using pulsed-field gel electrophoresis.	Porter JF, Connor K, Donachie W.	FEMS Microbiol Lett	10.1111/j.1574-6968.1996.tb07977.x	1996
	The O antigen enables Bordetella parapertussis to avoid Bordetella pertussis-induced immunity.	Wolfe DN, Goebel EM, Bjornstad ON, Restif O, Harvill ET.	Infect Immun	10.1128/iai.00763-07	2007
	Predisposition of specific pathogen-free lambs to Pasteurella haemolytica pneumonia by Bordetella parapertussis infection.	Porter JF, Connor K, Krueger N, Hodgson JC, Donachie W.	J Comp Pathol	10.1016/s0021-9975(05)80019-2	1995
Enzymology	Multicenter Evaluation of the QIAstat-Dx Respiratory Panel for Detection of Viruses and Bacteria in Nasopharyngeal Swab Specimens.	Leber AL, Lisby JG, Hansen G, Relich RF, Schneider UV, Granato P, Young S, Pareja J, Hannet I.	J Clin Microbiol	10.1128/jcm.00155-20	2020
	Improving specificity of Bordetella pertussis detection using a four target real-time PCR.	Martini H, Detemmerman L, Soetens O, Yusuf E, Pierard D.	PLoS One	10.1371/journal.pone.0175587	2017
	DegP Initiates Regulated Processing of Filamentous Hemagglutinin in Bordetella bronchiseptica.	Johnson RM, Nash ZM, Dedloff MR, Shook JC, Cotter PA.	mBio	10.1128/mbio.01465-21	2021
	Homologous trans-editing factors with broad tRNA specificity prevent mistranslation caused by serine/threonine misactivation.	Liu Z, Vargas-Rodriguez O, Goto Y, Novoa EM, Ribas de Pouplana L, Suga H, Musier-Forsyth K.	Proc Natl Acad Sci U S A	10.1073/pnas.1423664112	2015
	Overproduction, crystallization and X-ray diffraction data analysis of ectoine synthase from the cold-adapted marine bacterium Sphingopyxis alaskensis.	Kobus S, Widderich N, Hoeppner A, Bremer E, Smits SH.	Acta Crystallogr F Struct Biol Commun	10.1107/s2053230x15011115	2015
	Role of pertussis toxin in causing symptoms of Bordetella parapertussis infection.	Wirsing von Konig CH, Finger H.	Eur J Clin Microbiol Infect Dis	10.1007/bf01974634	1994
Phylogeny	Characterisation of ovine Bordetella parapertussis isolates by analysis of specific endotoxin (lipopolysaccharide) epitopes, filamentous haemagglutinin production, cellular fatty acid composition and antibiotic sensitivity.	Porter JF, Connor K, van der Zee A, Reubsaet F, Ibsen P, Heron I, Chaby R, Le Blay K, Donachie W.	FEMS Microbiol Lett	10.1111/j.1574-6968.1995.tb07833.x	1995
Phylogeny	The differentiation of Bordetella parapertussis and Bordetella bronchiseptica from humans and animals as determined by DNA polymorphism mediated by two different insertion sequence elements suggests their phylogenetic relationship.	van der Zee A, Groenendijk H, Peeters M, Mooi FR.	Int J Syst Bacteriol	10.1099/00207713-46-3-640	1996
	Detection of small RNAs in Bordetella pertussis and identification of a novel repeated genetic element.	Hot D, Slupek S, Wulbrecht B, D'Hondt A, Hubans C, Antoine R, Locht C, Lemoine Y.	BMC Genomics	10.1186/1471-2164-12-207	2011
Enzymology	Assessment of the Usefulness of Multiplex Real-Time PCR Tests in the Diagnostic and Therapeutic Process of Pneumonia in Hospitalized Children: A Single-Center Experience.	Gowin E, Bartkowska-Sniatkowska A, Jonczyk-Potoczna K, Wysocka-Leszczynska J, Bobkowski W, Fichna P, Sobkowiak P, Mazur-Melewska K, Breborowicz A, Wysocki J, Januszkiewicz-Lewandowska D.	Biomed Res Int	10.1155/2017/8037963	2017
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	Protective Role of Passively Transferred Maternal Cytokines against Bordetella pertussis Infection in Newborn Piglets.	Elahi S, Thompson DR, Van Kessel J, Babiuk LA, Gerdts V.	Infect Immun	10.1128/iai.01063-16	2017
	Genomics of Bordetella pertussis toxins.	Antoine R, Raze D, Locht C.	Int J Med Microbiol	10.1016/s1438-4221(00)80026-0	2000
Metabolism	Disruption of tonB in Bordetella bronchiseptica and Bordetella pertussis prevents utilization of ferric siderophores, haemin and haemoglobin as iron sources.	Nicholson ML, Beall B.	Microbiology (Reading)	10.1099/00221287-145-9-2453	1999
	Bronchopneumonia in mice caused by Pasteurella haemolytica A2 after predisposition by ovine Bordetella parapertussis.	Porter JF, Mason CS, Krueger N, Connor K, Donachie W.	Vet Microbiol	10.1016/0378-1135(95)00045-c	1995
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Enzymology	The rationale and method for constructing internal control DNA used in pertussis polymerase chain reaction.	Muller FM, Schnitzler N, Cloot O, Kockelkorn P, Haase G, Li Z.	Diagn Microbiol Infect Dis	10.1016/s0732-8893(98)00043-1	1998
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Enzymology	Pertussis diagnosis in Belgium: results of the National Reference Centre for Bordetella anno 2015.	Martini H, Rodeghiero C, VAN DEN Poel C, Vincent M, Pierard D, Huygen K.	Epidemiol Infect	10.1017/s0950268817001108	2017
Metabolism	Identification and characterization of BipA, a Bordetella Bvg-intermediate phase protein.	Stockbauer KE, Fuchslocher B, Miller JF, Cotter PA.	Mol Microbiol	10.1046/j.1365-2958.2001.02191.x	2001
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Metabolism	Activation of Bvg-Repressed Genes in Bordetella pertussis by RisA Requires Cross Talk from Noncooperonic Histidine Kinase RisK.	Chen Q, Ng V, Warfel JM, Merkel TJ, Stibitz S.	J Bacteriol	10.1128/jb.00475-17	2017
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	Isolation of a repeated sequence from the genome of Bordetella parapertussis with characteristics of an insertion sequence element.	van der Zee A, Agterberg C, van Agterveld M, Peeters M, Mooi F.	Zentralbl Bakteriol	10.1016/s0934-8840(11)80862-5	1993
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Enzymology	Isolation and characterization of Bordetella parapertussis-like bacteria from ovine lungs.	Porter JF, Connor K, Donachie W.	Microbiology (Reading)	10.1099/13500872-140-2-255	1994
	Presence of 2-hydroxymyristate on endotoxins is associated with death in neonates with Enterobacter cloacae complex septic shock.	Augusto LA, Bourgeois-Nicolaos N, Breton A, Barreault S, Alonso EH, Gera S, Faraut-Derouin V, Semaan N, De Luca D, Chaby R, Doucet-Populaire F, Tissieres P.	iScience	10.1016/j.isci.2021.102916	2021
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	Clinical Characteristics of Hospitalized Infants With Laboratory-Confirmed Pertussis in Guatemala.	Phadke VK, McCracken JP, Kriss JL, Lopez MR, Lindblade KA, Bryan JP, Garcia ME, Funes CE, Omer SB.	J Pediatric Infect Dis Soc	10.1093/jpids/pix081	2018
Enzymology	More targeted use of oseltamivir and in-hospital isolation facilities after implementation of a multifaceted strategy including a rapid molecular diagnostic panel for respiratory viruses in immunocompromised adult patients.	Vos LM, Weehuizen JM, Hoepelman AIM, Kaasjager KHAH, Riezebos-Brilman A, Oosterheert JJ.	J Clin Virol	10.1016/j.jcv.2019.04.003	2019
	Parapertussis and pertussis: differences and similarities in incidence, clinical course, and antibody responses.	Bergfors E, Trollfors B, Taranger J, Lagergard T, Sundh V, Zackrisson G.	Int J Infect Dis	10.1016/s1201-9712(99)90035-8	1999
	T- and B-cell-mediated protection induced by novel, live attenuated pertussis vaccine in mice. Cross protection against parapertussis.	Feunou PF, Bertout J, Locht C.	PLoS One	10.1371/journal.pone.0010178	2010
	Correlation of Real Time PCR Cycle Threshold Cut-Off with Bordetella pertussis Clinical Severity.	Bolotin S, Deeks SL, Marchand-Austin A, Rilkoff H, Dang V, Walton R, Hashim A, Farrell D, Crowcroft NS.	PLoS One	10.1371/journal.pone.0133209	2015
	Historical review of pertussis and the classical vaccine.	Cherry JD.	J Infect Dis	10.1093/infdis/174.supplement_3.s259	1996
	Clearance of Bordetella parapertussis from the lower respiratory tract requires humoral and cellular immunity.	Wolfe DN, Kirimanjeswara GS, Harvill ET.	Infect Immun	10.1128/iai.73.10.6508-6513.2005	2005
Metabolism	Mg2+-dependent interactions of ATP with the cystathionine-beta-synthase (CBS) domains of a magnesium transporter.	Hirata Y, Funato Y, Takano Y, Miki H.	J Biol Chem	10.1074/jbc.m114.551176	2014
	Report of a pertussis outbreak in a low coverage booster vaccination group of otherwise healthy children in Italy.	Tafuri S, Gallone MS, Martinelli D, Prato R, Chironna M, Germinario C.	BMC Infect Dis	10.1186/1471-2334-13-541	2013
Enzymology	Real-time LightCycler PCR for detection and discrimination of Bordetella pertussis and Bordetella parapertussis.	Kosters K, Reischl U, Schmetz J, Riffelmann M, Wirsing von Konig CH.	J Clin Microbiol	10.1128/jcm.40.5.1719-1722.2002	2002
	Clearance of ovine isolates of Bordetella parapertussis from murine trachea and lungs.	Chen W, Alley MR, Manktelow BW.	N Z Vet J	10.1080/00480169.1991.35666	1991
Enzymology	Structure of the N-terminal fragment of Escherichia coli Lon protease.	Li M, Gustchina A, Rasulova FS, Melnikov EE, Maurizi MR, Rotanova TV, Dauter Z, Wlodawer A.	Acta Crystallogr D Biol Crystallogr	10.1107/s0907444910019554	2010
Enzymology	Comparison of the Bordetella pertussis and Bordetella parapertussis isolates circulating in Saint Petersburg between 1998 and 2000 with Russian vaccine strains.	Kourova N, Caro V, Weber C, Thiberge S, Chuprinina R, Tseneva G, Guiso N.	J Clin Microbiol	10.1128/jcm.41.8.3706-3711.2003	2003
	The O antigen is a critical antigen for the development of a protective immune response to Bordetella parapertussis.	Zhang X, Goebel EM, Rodriguez ME, Preston A, Harvill ET.	Infect Immun	10.1128/iai.00667-09	2009
	Epidemiology of pertussis in Casablanca (Morocco): contribution of conventional and molecular diagnosis tools.	Katfy K, Guiso N, Diawara I, Zerouali K, Slaoui B, Jouhadi Z, Zineddine A, Belabbes H, Elmdaghri N.	BMC Infect Dis	10.1186/s12879-017-2452-3	2017
	Characterization of the common antigenic lipopolysaccharide O-chains produced by Bordetella bronchiseptica and Bordetella parapertussis.	Di Fabio JL, Caroff M, Karibian D, Richards JC, Perry MB.	FEMS Microbiol Lett	10.1016/0378-1097(92)90348-r	1992
Phylogeny	Evaluation of the Bruker MALDI Biotyper for Identification of Fastidious Gram-Negative Rods.	Schulthess B, Bloemberg GV, Zbinden A, Mouttet F, Zbinden R, Bottger EC, Hombach M.	J Clin Microbiol	10.1128/jcm.03107-15	2016
Enzymology	Detection of enteroviruses and parechoviruses by a multiplex real-time RT-PCR assay.	Pabbaraju K, Wong S, Wong AA, Tellier R.	Mol Cell Probes	10.1016/j.mcp.2015.02.001	2015
	Experimental pneumonia in mice produced by combined administration of Bordetella parapertussis and Pasteurella haemolytica isolated from sheep.	Jian Z, Alley MR, Manktelow BW.	J Comp Pathol	10.1016/s0021-9975(08)80036-9	1991
	A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission: a study of a family cluster.	Chan JF, Yuan S, Kok KH, To KK, Chu H, Yang J, Xing F, Liu J, Yip CC, Poon RW, Tsoi HW, Lo SK, Chan KH, Poon VK, Chan WM, Ip JD, Cai JP, Cheng VC, Chen H, Hui CK, Yuen KY.	Lancet	10.1016/s0140-6736(20)30154-9	2020
	Pasteurella haemolytica complicated respiratory infections in sheep and goats.	Brogden KA, Lehmkuhl HD, Cutlip RC.	Vet Res		1998
	Pertussis in infants: an underestimated disease.	Vittucci AC, Spuri Vennarucci V, Grandin A, Russo C, Lancella L, Tozzi AE, Bartuli A, Villani A.	BMC Infect Dis	10.1186/s12879-016-1710-0	2016
Pathogenicity	In vitro susceptibilities of Bordetella pertussis and Bordetella parapertussis to four fluoroquinolones (levofloxacin, d-ofloxacin, ofloxacin, and ciprofloxacin), cefpirome, and meropenem.	Hoppe JE, Rahimi-Galougahi E, Seibert G.	Antimicrob Agents Chemother	10.1128/aac.40.3.807	1996
	Development of a cell culture assay for Bordetella parapertussis heat-labile toxin.	Endoh M, Nagai M, Burns DL, Manclark CR, Nakase Y.	Biologicals	10.1016/1045-1056(90)90035-x	1990
Enzymology	Moredun Bordetella Medium, an improved selective medium for isolation of Bordetella parapertussis.	Connor KM, Porter JF, Quirie MM, Donachie W.	J Clin Microbiol	10.1128/jcm.34.3.638-640.1996	1996
Pathogenicity	Activity of new macrolides against Bordetella pertussis and Bordetella parapertussis.	Hoppe JE, Eichhorn A.	Eur J Clin Microbiol Infect Dis	10.1007/bf01968151	1989
Genetics	Investigating genome reduction of Bordetella pertussis using a multiplex PCR-based reverse line blot assay (mPCR/RLB).	Lam C, Octavia S, Sintchenko V, Gilbert GL, Lan R.	BMC Res Notes	10.1186/1756-0500-7-727	2014
	Heat-labile toxin from Bordetella parapertussis induces contraction of smooth muscle cells in culture.	Nagai M, Endoh M, Burns DL, Nakase Y.	Microbiol Immunol	10.1111/j.1348-0421.1992.tb02063.x	1992
Metabolism	Inefficient Toll-like receptor-4 stimulation enables Bordetella parapertussis to avoid host immunity.	Wolfe DN, Buboltz AM, Harvill ET.	PLoS One	10.1371/journal.pone.0004280	2009
	Evaluation of the BioFire FilmArray Pneumonia Panel for Detection of Viral and Bacterial Pathogens in Lower Respiratory Tract Specimens in the Setting of a Tertiary Care Academic Medical Center.	Webber DM, Wallace MA, Burnham CA, Anderson NW.	J Clin Microbiol	10.1128/jcm.00343-20	2020
Pathogenicity	Azithromycin Clears Bordetella pertussis Infection in Mice but Also Modulates Innate and Adaptive Immune Responses and T Cell Memory.	Borkner L, Misiak A, Wilk MM, Mills KHG.	Front Immunol	10.3389/fimmu.2018.01764	2018
Pathogenicity	In vitro susceptibilities of Bordetella pertussis and Bordetella parapertussis to two ketolides (HMR 3004 and HMR 3647), four macrolides (azithromycin, clarithromycin, erythromycin A, and roxithromycin), and two ansamycins (rifampin and rifapentine).	Hoppe JE, Bryskier A.	Antimicrob Agents Chemother	10.1128/aac.42.4.965	1998
	Pneumonia in mice produced by cell-free extract of cultures of Bordetella parapertussis.	Chen W, Alley MR, Manktelow BW.	Res Vet Sci	10.1016/s0034-5288(18)31502-9	1990
	The identification, cloning and mutagenesis of a genetic locus required for lipopolysaccharide biosynthesis in Bordetella pertussis.	Allen A, Maskell D.	Mol Microbiol	10.1046/j.1365-2958.1996.354877.x	1996
Enzymology	The Aspergillus fumigatus dihydroxyacid dehydratase Ilv3A/IlvC is required for full virulence.	Oliver JD, Kaye SJ, Tuckwell D, Johns AE, Macdonald DA, Livermore J, Warn PA, Birch M, Bromley MJ.	PLoS One	10.1371/journal.pone.0043559	2012
	Mixed outbreak of Bordetella pertussis and Bordetella parapertussis in an apartment house.	Iwata S, Aoyama T, Goto A, Iwai H, Sato Y, Akita H, Murase Y, Oikawa T, Iwata T, Kusano S.	Dev Biol Stand		1991
	P.70 pertactin, an outer-membrane protein from Bordetella parapertussis: cloning, nucleotide sequence and surface expression in Escherichia coli.	Li LJ, Dougan G, Novotny P, Charles IG.	Mol Microbiol	10.1111/j.1365-2958.1991.tb02123.x	1991
	Tetrameric repeat units associated with virulence factor phase variation in Haemophilus also occur in Neisseria spp. and Moraxella catarrhalis.	Peak IR, Jennings MP, Hood DW, Bisercic M, Moxon ER.	FEMS Microbiol Lett	10.1111/j.1574-6968.1996.tb08091.x	1996
	Pneumonia in lambs inoculated with Bordetella parapertussis: clinical and pathological studies.	Chen W, Alley MR, Manktelow BW.	N Z Vet J	10.1080/00480169.1988.35509	1988
	Frequency of unrecognized Bordetella pertussis infections in adults.	Deville JG, Cherry JD, Christenson PD, Pineda E, Leach CT, Kuhls TL, Viker S.	Clin Infect Dis	10.1093/clinids/21.3.639	1995
	Cefiderocol: A Novel Agent for the Management of Multidrug-Resistant Gram-Negative Organisms.	Wu JY, Srinivas P, Pogue JM.	Infect Dis Ther	10.1007/s40121-020-00286-6	2020
	Solution structure of the oncogenic MIEN1 protein reveals a thioredoxin-like fold with a redox-active motif.	Hsu CH, Shen TL, Chang CF, Chang YY, Huang LY.	PLoS One	10.1371/journal.pone.0052292	2012
	Crystal structure of the N-terminal domain of E. coli Lon protease.	Li M, Rasulova F, Melnikov EE, Rotanova TV, Gustchina A, Maurizi MR, Wlodawer A.	Protein Sci	10.1110/ps.051736805	2005
	Implementing hospital-based surveillance for severe acute respiratory infections caused by influenza and other respiratory pathogens in New Zealand.	Huang QS, Baker M, McArthur C, Roberts S, Williamson D, Grant C, Trenholme A, Wong C, Taylor S, LeComte L, Mackereth G, Bandaranayake D, Wood T, Bissielo A, Seeds R, Turner N, Pierse N, Thomas P, Webby R, Gross D, Duque J, Thompson M, Widdowson MA.	Western Pac Surveill Response J	10.5365/wpsar.2014.5.1.004	2014
Phylogeny	Variability of the Sheep Lung Microbiota.	Glendinning L, Wright S, Pollock J, Tennant P, Collie D, McLachlan G.	Appl Environ Microbiol	10.1128/aem.00540-16	2016
	Acquisition of IgG serum antibodies against two Bordetella antigens (filamentous hemagglutinin and pertactin) in children with no symptoms of pertussis.	Isacson J, Trollfors B, Taranger J, Lagergard T.	Pediatr Infect Dis J	10.1097/00006454-199506000-00009	1995
Metabolism	A Link between Integral Membrane Protein Expression and Simulated Integration Efficiency.	Marshall SS, Niesen MJM, Muller A, Tiemann K, Saladi SM, Galimidi RP, Zhang B, Clemons WM, Miller TF.	Cell Rep	10.1016/j.celrep.2016.07.042	2016
	Experimental induction of pneumonia in mice with Bordetella parapertussis isolated from sheep.	Chen WX, Alley MR, Manktelow BW.	J Comp Pathol	10.1016/0021-9975(89)90092-3	1989
Metabolism	Membrane Activity and Channel Formation of the Adenylate Cyclase Toxin (CyaA) of Bordetella pertussis in Lipid Bilayer Membranes.	Knapp O, Benz R.	Toxins (Basel)	10.3390/toxins12030169	2020
	Role of systemic and mucosal immune responses in reciprocal protection against Bordetella pertussis and Bordetella parapertussis in a murine model of respiratory infection.	Watanabe M, Nagai M.	Infect Immun	10.1128/iai.71.2.733-738.2003	2003
	Bordetella pertussis diagnosed by polymerase chain reaction.	Birkebaek NH, Heron I, Skjodt K.	APMIS	10.1111/j.1699-0463.1994.tb04878.x	1994
	Community-acquired pathogens associated with prolonged coughing in children: a prospective cohort study.	Versteegh FG, Weverling GJ, Peeters MF, Wilbrink B, Veenstra-van Schie MT, van Leeuwen-Gerritsen JM, Mooi-Kokenberg EA, Schellekens JF, Roord JJ.	Clin Microbiol Infect	10.1111/j.1469-0691.2005.01234.x	2005
Phylogeny	Genetic relatedness of Bordetella species as determined by macrorestriction digests resolved by pulsed-field gel electrophoresis.	Khattak MN, Matthews RC.	Int J Syst Bacteriol	10.1099/00207713-43-4-659	1993
	Tracheal colonization factor: a Bordetella pertussis secreted virulence determinant.	Finn TM, Stevens LA.	Mol Microbiol	10.1111/j.1365-2958.1995.tb02425.x	1995
	Pneumonia in lambs inoculated with Bordetella parapertussis: bronchoalveolar lavage and ultrastructural studies.	Chen W, Alley MR, Manktelow BW, Hopcroft D, Bennett R.	Vet Pathol	10.1177/030098588802500408	1988
	Broad-Range Detection of Microorganisms Directly from Bronchoalveolar Lavage Specimens by PCR/Electrospray Ionization-Mass Spectrometry.	Ullberg M, Luthje P, Molling P, Stralin K, Ozenci V.	PLoS One	10.1371/journal.pone.0170033	2017
Pathogenicity	Evolution of acute infections and the invasion-persistence trade-off.	King AA, Shrestha S, Harvill ET, Bjornstad ON.	Am Nat	10.1086/597217	2009
Pathogenicity	Susceptibility of Bordetella pertussis and Bordetella parapertussis to 24 antibiotics.	Hoppe JE, Haug A, Botzenhart K.	Chemotherapy	10.1159/000238503	1987
	Invasion of HeLa cells by Bordetella bronchiseptica.	Savelkoul PH, Kremer B, Kusters JG, van der Zeijst BA, Gaastra W.	Microb Pathog	10.1006/mpat.1993.1016	1993
	Polymorphism of repeated regions of pertactin in Bordetella pertussis, Bordetella parapertussis, and Bordetella bronchiseptica.	Boursaux-Eude C, Guiso N.	Infect Immun	10.1128/iai.68.8.4815-4817.2000	2000
Phylogeny	Ribosomal DNA-directed PCR for identification of Achromobacter (Alcaligenes) xylosoxidans recovered from sputum samples from cystic fibrosis patients.	Liu L, Coenye T, Burns JL, Whitby PW, Stull TL, LiPuma JJ.	J Clin Microbiol	10.1128/jcm.40.4.1210-1213.2002	2002
	Mixed outbreak of Bordetella pertussis and Bordetella parapertussis infection in Finland.	Mertsola J.	Eur J Clin Microbiol	10.1007/bf02013576	1985
Genetics	Genomic features of Bordetella parapertussis clades with distinct host species specificity.	Brinig MM, Register KB, Ackermann MR, Relman DA.	Genome Biol	10.1186/gb-2006-7-9-r81	2006
	Cytopathic effect of heat-labile toxin of Bordetella parapertussis on aortic smooth muscle cells from pigs or guinea pigs.	Endoh M, Nagai M, Ueda T, Yoshida Y, Nakase Y.	Microbiol Immunol	10.1111/j.1348-0421.1988.tb01401.x	1988
Phylogeny	[Detection of the gene sequences of the leukocytosis (lymphocytosis)-stimulating factor of Bordetella pertussis in Bordetella parapertussis and Bordetella bronchiseptica by using molecular hybridization].	Rozinov MN, Shumakov IuL, Dain AA, Gol'tsmaier TA, Gershanovich VN.	Zh Mikrobiol Epidemiol Immunobiol		1988
Phylogeny	Development of a recA gene-based identification approach for the entire Burkholderia genus.	Payne GW, Vandamme P, Morgan SH, Lipuma JJ, Coenye T, Weightman AJ, Jones TH, Mahenthiralingam E.	Appl Environ Microbiol	10.1128/aem.71.7.3917-3927.2005	2005
Pathogenicity	The dlt operon of Bacillus cereus is required for resistance to cationic antimicrobial peptides and for virulence in insects.	Abi Khattar Z, Rejasse A, Destoumieux-Garzon D, Escoubas JM, Sanchis V, Lereclus D, Givaudan A, Kallassy M, Nielsen-Leroux C, Gaudriault S.	J Bacteriol	10.1128/jb.00892-09	2009
	Filifactor alocis manipulates human neutrophils affecting their ability to release neutrophil extracellular traps induced by PMA.	Armstrong CL, Klaes CK, Vashishta A, Lamont RJ, Uriarte SM.	Innate Immun	10.1177/1753425918767507	2018
	Pathogen proteins eliciting antibodies do not share epitopes with host proteins: a bioinformatics approach.	Amela I, Cedano J, Querol E.	PLoS One	10.1371/journal.pone.0000512	2007
Metabolism	Improving membrane protein expression by optimizing integration efficiency.	Niesen MJM, Marshall SS, Miller TF, Clemons WM.	J Biol Chem	10.1074/jbc.m117.813469	2017
Pathogenicity	In vitro susceptibility of Bordetella parapertussis to various antimicrobial agents.	Watanabe M, Haraguchi Y.	Antimicrob Agents Chemother	10.1128/aac.33.6.968	1989
	The bvg-dependent promoters show similar behaviour in different Bordetella species and share sequence homologies.	Scarlato V, Prugnola A, Arico B, Rappuoli R.	Mol Microbiol	10.1111/j.1365-2958.1991.tb02094.x	1991
	Cloning, nucleotide sequence and heterologous expression of the protective outer-membrane protein P.68 pertactin from Bordetella bronchiseptica.	Li J, Fairweather NF, Novotny P, Dougan G, Charles IG.	J Gen Microbiol	10.1099/00221287-138-8-1697	1992
Enzymology	Multicenter Evaluation of the ePlex Respiratory Pathogen Panel for the Detection of Viral and Bacterial Respiratory Tract Pathogens in Nasopharyngeal Swabs.	Babady NE, England MR, Jurcic Smith KL, He T, Wijetunge DS, Tang YW, Chamberland RR, Menegus M, Swierkosz EM, Jerris RC, Greene W.	J Clin Microbiol	10.1128/jcm.01658-17	2018
Pathogenicity	Chick embryo, a model to study the lethal activity of pertussis toxin, infectivity of Bordetella pertussis, and their neutralization by immune sera.	Calver GA, Burton WW, Gardell CY.	Can J Microbiol	10.1139/m93-112	1993
	Isolation of a putative fimbrial adhesin from Bordetella pertussis and the identification of its gene.	Willems RJ, Geuijen C, van der Heide HG, Matheson M, Robinson A, Versluis LF, Ebberink R, Theelen J, Mooi FR.	Mol Microbiol	10.1111/j.1365-2958.1993.tb01722.x	1993
	Reciprocal protective immunity against Bordetella pertussis and Bordetella parapertussis in a murine model of respiratory infection.	Watanabe M, Nagai M.	Infect Immun	10.1128/iai.69.11.6981-6986.2001	2001
	Genetics of pertussis toxin.	Gross R, Arico B, Rappuoli R.	Mol Microbiol	10.1111/j.1365-2958.1989.tb00111.x	1989
	Live attenuated B. pertussis as a single-dose nasal vaccine against whooping cough.	Mielcarek N, Debrie AS, Raze D, Bertout J, Rouanet C, Younes AB, Creusy C, Engle J, Goldman WE, Locht C.	PLoS Pathog	10.1371/journal.ppat.0020065	2006
	How to fight pertussis?	Guiso N.	Ther Adv Vaccines	10.1177/2051013613481348	2013
Phylogeny	DNA hybridization for diagnosis of pertussis.	Reizenstein E, Morfeldt E, Granstrom G, Granstrom M, Lofdahl S.	Mol Cell Probes	10.1016/0890-8508(90)90021-q	1990
Pathogenicity	Contractile action of heat-labile toxin of Bordetella parapertussis on aortic smooth muscles of pigs.	Endoh M, Nagai M, Nakase Y.	Microbiol Immunol	10.1111/j.1348-0421.1988.tb01437.x	1988
	Structural and genetic analysis of the bvg locus in Bordetella species.	Arico B, Scarlato V, Monack DM, Falkow S, Rappuoli R.	Mol Microbiol	10.1111/j.1365-2958.1991.tb02093.x	1991
	Serum immunoglobulin G antibody responses to Bordetella pertussis lipooligosaccharide and B. parapertussis lipopolysaccharide in children with pertussis and parapertussis.	Trollfors B, Lagergard T, Taranger J, Bergfors E, Schneerson R, Robbins JB.	Clin Diagn Lab Immunol	10.1128/cdli.8.5.1015-1017.2001	2001
Enzymology	Bordetella adenylate cyclase is a virulence associated factor and an immunoprotective antigen.	Guiso N, Rocancourt M, Szatanik M, Alonso JM.	Microb Pathog	10.1016/0882-4010(89)90040-5	1989
	Expression of pertussis toxin correlates with pathogenesis in Bordetella species.	Monack D, Munoz JJ, Peacock MG, Black WJ, Falkow S.	J Infect Dis	10.1093/infdis/159.2.205	1989
	Cloning and sequencing of the structural gene for the porin protein of Bordetella pertussis.	Li ZM, Hannah JH, Stibitz S, Nguyen NY, Manclark CR, Brennan MJ.	Mol Microbiol	10.1111/j.1365-2958.1991.tb01912.x	1991
Pathogenicity	Bordetellae and charcoal horse blood agar: inactivation of antibiotics in agar during prolonged incubation for susceptibility testing.	Hoppe JE, Haug A, Botzenhart K.	Chemotherapy	10.1159/000238545	1988
Metabolism	The Transcriptional Regulator BpsR Controls the Growth of Bordetella bronchiseptica by Repressing Genes Involved in Nicotinic Acid Degradation.	Guragain M, Jennings-Gee J, Cattelan N, Finger M, Conover MS, Hollis T, Deora R.	J Bacteriol	10.1128/jb.00712-17	2018
	[Toxigenicity conversion by pertussis phages in Bordetella parapertussis].	Lapaeva IA, Mebel' SM, Siniashina LN, Shakhvatova OIu.	Zh Mikrobiol Epidemiol Immunobiol		1982
Phylogeny	Development of a novel genus-specific real-time PCR assay for detection and differentiation of Bartonella species and genotypes.	Diaz MH, Bai Y, Malania L, Winchell JM, Kosoy MY.	J Clin Microbiol	10.1128/jcm.06621-11	2012
	Characterization of a Bvg-regulated fatty acid methyl-transferase in Bordetella pertussis.	Rivera-Millot A, Lesne E, Solans L, Coutte L, Bertrand-Michel J, Froguel P, Dhennin V, Hot D, Locht C, Antoine R, Jacob-Dubuisson F.	PLoS One	10.1371/journal.pone.0176396	2017
	Ten years' experience with year-round active surveillance of up to 19 respiratory pathogens in children.	Weigl JA, Puppe W, Meyer CU, Berner R, Forster J, Schmitt HJ, Zepp F.	Eur J Pediatr	10.1007/s00431-007-0496-x	2007
	Genetic Variation of Bordetella pertussis in Austria.	Wagner B, Melzer H, Freymuller G, Stumvoll S, Rendi-Wagner P, Paulke-Korinek M, Repa A, Mooi FR, Kollaritsch H, Mittermayer H, Kessler HH, Stanek G, Steinborn R, Duchene M, Wiedermann U.	PLoS One	10.1371/journal.pone.0132623	2015
	The Bordetella avium BAV1965-1962 fimbrial locus is regulated by temperature and produces fimbriae involved in adherence to turkey tracheal tissue.	Loker SB, Temple LM, Preston A.	Infect Immun	10.1128/iai.01169-10	2011
	Antigenic Variation among Bordetella: Bordetella bronchiseptica strain MO149 expresses a novel o chain that is poorly immunogenic.	Vinogradov E, King JD, Pathak AK, Harvill ET, Preston A.	J Biol Chem	10.1074/jbc.m110.115121	2010
	Pertussis serodiagnosis in Belgium from 1990 to 2009.	Vincent M, Rodeghiero C, Eylenbosch R, Mans Y, Swalus-Steenhouwer J, Pierard D, Huygen K, Vanhoof R.	Clin Vaccine Immunol	10.1128/cvi.00003-11	2011
Enzymology	Separation of immunoglobulins and lactoferrin from cheese whey by chelating chromatography.	Al-Mashikhi SA, Li-Chan E, Nakai S.	J Dairy Sci	10.3168/jds.s0022-0302(88)79741-6	1988
Metabolism	Hijacking Factor H for Complement Immune Evasion.	Moore SR, Menon SS, Cortes C, Ferreira VP.	Front Immunol	10.3389/fimmu.2021.602277	2021
	[Polyacrylamide gel disc electrophoretic study of laboratory and freshly isolated strains of Bordetella pertussis and Bordetella parapertussis].	Samsonova VS, Mamaeva EA, Kondrat'eva AM.	Zh Mikrobiol Epidemiol Immunobiol		1981
	Evolutionary relationships in the genus Bordetella.	Arico B, Gross R, Smida J, Rappuoli R.	Mol Microbiol	10.1111/j.1365-2958.1987.tb01936.x	1987
	[Conversion of Bordetella parapertussis serovar through lysogeny produced by pertussis phages].	Mebel S, Lapaeva I.	Zentralbl Bakteriol Mikrobiol Hyg A Med Mikrobiol Infekt Parasitol	10.1016/s0174-3031(82)80032-2	1982
	[Increased sensitivity of the parapertussis diagnostic agent].	Chernavskaia LN, Moskalenko EP.	Zh Mikrobiol Epidemiol Immunobiol		1985
	The epidemiological situation of pertussis in the Federal Republic of Germany.	Finger H, Wirsing von Konig CH, Tacken A, Wassilak SG.	Dev Biol Stand		1991
Enzymology	Human bocavirus: prevalence and clinical spectrum at a children's hospital.	Arnold JC, Singh KK, Spector SA, Sawyer MH.	Clin Infect Dis	10.1086/505399	2006
Enzymology	Nested duplex PCR to detect Bordetella pertussis and Bordetella parapertussis and its application in diagnosis of pertussis in nonmetropolitan Southeast Queensland, Australia.	Farrell DJ, Daggard G, Mukkur TK.	J Clin Microbiol	10.1128/jcm.37.3.606-610.1999	1999
Metabolism	Identification of a CO2 responsive regulon in Bordetella.	Hester SE, Lui M, Nicholson T, Nowacki D, Harvill ET.	PLoS One	10.1371/journal.pone.0047635	2012
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Pathogenicity	Airway Microbiota-Host Interactions Regulate Secretory Leukocyte Protease Inhibitor Levels and Influence Allergic Airway Inflammation.	Jaeger N, McDonough RT, Rosen AL, Hernandez-Leyva A, Wilson NG, Lint MA, Russler-Germain EV, Chai JN, Bacharier LB, Hsieh CS, Kau AL.	Cell Rep	10.1016/j.celrep.2020.108331	2020
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Metabolism	Interleukin-1 receptor signaling is required to overcome the effects of pertussis toxin and for efficient infection- or vaccination-induced immunity against Bordetella pertussis.	Zhang X, Hester SE, Kennett MJ, Karanikas AT, Bendor L, Place DE, Harvill ET.	Infect Immun	10.1128/iai.00590-10	2011
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Metabolism	The Bordetella Bps Polysaccharide Is Required for Biofilm Formation and Enhances Survival in the Lower Respiratory Tract of Swine.	Nicholson TL, Brockmeier SL, Sukumar N, Paharik AE, Lister JL, Horswill AR, Kehrli ME, Loving CL, Shore SM, Deora R.	Infect Immun	10.1128/iai.00261-17	2017
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Metabolism	Characterization of WbpB, WbpE, and WbpD and reconstitution of a pathway for the biosynthesis of UDP-2,3-diacetamido-2,3-dideoxy-D-mannuronic acid in Pseudomonas aeruginosa.	Westman EL, McNally DJ, Charchoglyan A, Brewer D, Field RA, Lam JS.	J Biol Chem	10.1074/jbc.m808583200	2009
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Enzymology	Novel, host-restricted genotypes of Bordetella bronchiseptica associated with phocine respiratory tract isolates.	Register KB, Ivanov YV, Harvill ET, Davison N, Foster G.	Microbiology (Reading)	10.1099/mic.0.000035	2015
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Metabolism	Enzymatic modification of lipid A by ArnT protects Bordetella bronchiseptica against cationic peptides and is required for transmission.	Rolin O, Muse SJ, Safi C, Elahi S, Gerdts V, Hittle LE, Ernst RK, Harvill ET, Preston A.	Infect Immun	10.1128/iai.01260-12	2014
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Metabolism	Characterization of the PAS domain in the sensor-kinase BvgS: mechanical role in signal transmission.	Dupre E, Wohlkonig A, Herrou J, Locht C, Jacob-Dubuisson F, Antoine R.	BMC Microbiol	10.1186/1471-2180-13-172	2013
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Metabolism	Iron and pH-responsive FtrABCD ferrous iron utilization system of Bordetella species.	Brickman TJ, Armstrong SK.	Mol Microbiol	10.1111/mmi.12003	2012
	Pseudomonas aeruginosa Psl polysaccharide reduces neutrophil phagocytosis and the oxidative response by limiting complement-mediated opsonization.	Mishra M, Byrd MS, Sergeant S, Azad AK, Parsek MR, McPhail L, Schlesinger LS, Wozniak DJ.	Cell Microbiol	10.1111/j.1462-5822.2011.01704.x	2012
	The suboptimal structures find the optimal RNAs: homology search for bacterial non-coding RNAs using suboptimal RNA structures.	Panek J, Krasny L, Bobek J, Jezkova E, Korelusova J, Vohradsky J.	Nucleic Acids Res	10.1093/nar/gkq1186	2011
	Utility of signs and symptoms of chronic cough in predicting specific cause in children.	Marchant JM, Masters IB, Taylor SM, Chang AB.	Thorax	10.1136/thx.2005.056986	2006
Metabolism	Role of Bordetella pertussis RseA in the cell envelope stress response and adenylate cyclase toxin release.	Hanawa T, Yonezawa H, Kawakami H, Kamiya S, Armstrong SK.	Pathog Dis	10.1111/2049-632x.12061	2013
Metabolism	Nucleotide binding triggers a conformational change of the CBS module of the magnesium transporter CNNM2 from a twisted towards a flat structure.	Corral-Rodriguez MA, Stuiver M, Abascal-Palacios G, Diercks T, Oyenarte I, Ereno-Orbea J, de Opakua AI, Blanco FJ, Encinar JA, Spiwok V, Terashima H, Accardi A, Muller D, Martinez-Cruz LA.	Biochem J	10.1042/bj20140409	2014
Enzymology	Structure and activity of the Pseudomonas aeruginosa hotdog-fold thioesterases PA5202 and PA2801.	Gonzalez CF, Tchigvintsev A, Brown G, Flick R, Evdokimova E, Xu X, Osipiuk J, Cuff ME, Lynch S, Joachimiak A, Savchenko A, Yakunin AF.	Biochem J	10.1042/bj20112032	2012
Metabolism	A role for lipopolysaccharide in turkey tracheal colonization by Bordetella avium as demonstrated in vivo and in vitro.	Spears PA, Temple LM, Orndorff PE.	Mol Microbiol	10.1046/j.1365-2958.2000.01963.x	2000
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	Membrane topology and intracellular processing of cyclin M2 (CNNM2).	de Baaij JH, Stuiver M, Meij IC, Lainez S, Kopplin K, Venselaar H, Muller D, Bindels RJ, Hoenderop JG.	J Biol Chem	10.1074/jbc.m112.342204	2012
Phylogeny	Semiquantitative catalase test as an aid in identification of oxidative and nonsaccharolytic gram-negative bacteria.	Chester B.	J Clin Microbiol	10.1128/jcm.10.4.525-528.1979	1979
Metabolism	Vag8, a Bordetella pertussis bvg-regulated protein.	Finn TM, Amsbaugh DF.	Infect Immun	10.1128/iai.66.8.3985-3989.1998	1998
Metabolism	Bacterial degradation of tert-amyl alcohol proceeds via hemiterpene 2-methyl-3-buten-2-ol by employing the tertiary alcohol desaturase function of the Rieske nonheme mononuclear iron oxygenase MdpJ.	Schuster J, Schafer F, Hubler N, Brandt A, Rosell M, Hartig C, Harms H, Muller RH, Rohwerder T.	J Bacteriol	10.1128/jb.06384-11	2012
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Genetics	Crucial role for insertion sequence elements in Lactobacillus helveticus evolution as revealed by interstrain genomic comparison.	Kaleta P, O'Callaghan J, Fitzgerald GF, Beresford TP, Ross RP.	Appl Environ Microbiol	10.1128/aem.01845-09	2010
	The effect of the addition of Bordetella parapertussis suspensions on the protective power of the pertusis component of diphtheria-tetanus-pertussis vaccines.	Kohler-Kubelka N.	J Hyg (Lond)	10.1017/s0022172400045964	1967
	Validation of a multiplex reverse transcriptase PCR ELISA for the detection of 19 respiratory tract pathogens.	Puppe W, Weigl J, Grondahl B, Knuf M, Rockahr S, von Bismarck P, Aron G, Niesters HG, Osterhaus AD, Schmitt HJ.	Infection	10.1007/s15010-012-0298-6	2013
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Pathogenicity	Combined real-time PCR and rpoB gene pyrosequencing for rapid identification of Mycobacterium tuberculosis and determination of rifampin resistance directly in clinical specimens.	Halse TA, Edwards J, Cunningham PL, Wolfgang WJ, Dumas NB, Escuyer VE, Musser KA.	J Clin Microbiol	10.1128/jcm.02149-09	2010
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Metabolism	Involvement of multiple distinct Bordetella receptor proteins in the utilization of iron liberated from transferrin by host catecholamine stress hormones.	Armstrong SK, Brickman TJ, Suhadolc RJ.	Mol Microbiol	10.1111/j.1365-2958.2012.08032.x	2012
Pathogenicity	Bordetella pertussis infection exacerbates influenza virus infection through pertussis toxin-mediated suppression of innate immunity.	Ayala VI, Teijaro JR, Farber DL, Dorsey SG, Carbonetti NH.	PLoS One	10.1371/journal.pone.0019016	2011
	Conserved signal peptide recognition systems across the prokaryotic domains.	Coulthurst SJ, Dawson A, Hunter WN, Sargent F.	Biochemistry	10.1021/bi201852d	2012
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Cultivation	Pig and goat blood as substitutes for sheep blood in blood-supplemented agar media.	Anand C, Gordon R, Shaw H, Fonseca K, Olsen M.	J Clin Microbiol	10.1128/jcm.38.2.591-594.2000	2000
Metabolism	Identification of AlcR, an AraC-type regulator of alcaligin siderophore synthesis in Bordetella bronchiseptica and Bordetella pertussis.	Pradel E, Guiso N, Locht C.	J Bacteriol	10.1128/jb.180.4.871-880.1998	1998
	Identification of Bordetella pertussis infection by shared-primer PCR.	Li Z, Jansen DL, Finn TM, Halperin SA, Kasina A, O'Connor SP, Aoyama T, Manclark CR, Brennan MJ.	J Clin Microbiol	10.1128/jcm.32.3.783-789.1994	1994
Pathogenicity	Susceptibility of Bordetella species to growth inhibition and killing by chlorpromazine.	Hewlett EL, Myers GA, Pearson RD.	Antimicrob Agents Chemother	10.1128/aac.23.2.201	1983
	Monoclonal antibody-based sandwich enzyme-linked immunosorbent assay for detection of Bordetella pertussis filamentous hemagglutinin.	Gustafsson B, Askelof P.	J Clin Microbiol	10.1128/jcm.26.10.2077-2082.1988	1988
	Identification of a 68-kilodalton protective protein antigen from Bordetella bronchiseptica.	Montaraz JA, Novotny P, Ivanyi J.	Infect Immun	10.1128/iai.47.3.744-751.1985	1985
Metabolism	BpsR modulates Bordetella biofilm formation by negatively regulating the expression of the Bps polysaccharide.	Conover MS, Redfern CJ, Ganguly T, Sukumar N, Sloan G, Mishra M, Deora R.	J Bacteriol	10.1128/jb.06020-11	2012
Enzymology	Validation of nested Bordetella PCR in pertussis vaccine trial.	Reizenstein E, Lindberg L, Mollby R, Hallander HO.	J Clin Microbiol	10.1128/jcm.34.4.810-815.1996	1996
	Regulation of primary alloantibody response through antecedent exposure to a microbial T-cell epitope.	Hudson KE, Lin E, Hendrickson JE, Lukacher AE, Zimring JC.	Blood	10.1182/blood-2009-08-238568	2010
	Development of a rapid diagnostic test for pertussis: direct detection of pertussis toxin in respiratory secretions.	Friedman RL, Paulaitis S, McMillan JW.	J Clin Microbiol	10.1128/jcm.27.11.2466-2470.1989	1989
Metabolism	Temporal signaling and differential expression of Bordetella iron transport systems: the role of ferrimones and positive regulators.	Brickman TJ, Armstrong SK.	Biometals	10.1007/s10534-008-9189-9	2009
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	Evaluation of an immunoglobulin G enzyme-linked immunosorbent assay for pertussis toxin and filamentous hemagglutinin in diagnosis of pertussis in Senegal.	Simondon F, Iteman I, Preziosi MP, Yam A, Guiso N.	Clin Diagn Lab Immunol	10.1128/cdli.5.2.130-134.1998	1998
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	The protein BpsB is a poly-beta-1,6-N-acetyl-D-glucosamine deacetylase required for biofilm formation in Bordetella bronchiseptica.	Little DJ, Milek S, Bamford NC, Ganguly T, DiFrancesco BR, Nitz M, Deora R, Howell PL.	J Biol Chem	10.1074/jbc.m115.672469	2015
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	Application of TaqMan low-density arrays for simultaneous detection of multiple respiratory pathogens.	Kodani M, Yang G, Conklin LM, Travis TC, Whitney CG, Anderson LJ, Schrag SJ, Taylor TH, Beall BW, Breiman RF, Feikin DR, Njenga MK, Mayer LW, Oberste MS, Tondella ML, Winchell JM, Lindstrom SL, Erdman DD, Fields BS.	J Clin Microbiol	10.1128/jcm.02270-10	2011
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Enzymology	Comparison of an internally controlled, large-volume LightCycler assay for detection of Mycobacterium tuberculosis in clinical samples with the COBAS AMPLICOR assay.	Burggraf S, Reischl U, Malik N, Bollwein M, Naumann L, Olgemoller B.	J Clin Microbiol	10.1128/jcm.43.4.1564-1569.2005	2005
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Metabolism	The Bordetella pertussis model of exquisite gene control by the global transcription factor BvgA.	Decker KB, James TD, Stibitz S, Hinton DM.	Microbiology (Reading)	10.1099/mic.0.058941-0	2012
	Analysis of a repetitive DNA sequence from Bordetella pertussis and its application to the diagnosis of pertussis using the polymerase chain reaction.	Glare EM, Paton JC, Premier RR, Lawrence AJ, Nisbet IT.	J Clin Microbiol	10.1128/jcm.28.9.1982-1987.1990	1990
Pathogenicity	Effector prediction in host-pathogen interaction based on a Markov model of a ubiquitous EPIYA motif.	Xu S, Zhang C, Miao Y, Gao J, Xu D.	BMC Genomics	10.1186/1471-2164-11-s3-s1	2010
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Metabolism	Origins and diversification of a complex signal transduction system in prokaryotes.	Wuichet K, Zhulin IB.	Sci Signal	10.1126/scisignal.2000724	2010
	Rapid and sensitive method using multiplex real-time PCR for diagnosis of infections by influenza a and influenza B viruses, respiratory syncytial virus, and parainfluenza viruses 1, 2, 3, and 4.	Templeton KE, Scheltinga SA, Beersma MF, Kroes AC, Claas EC.	J Clin Microbiol	10.1128/jcm.42.4.1564-1569.2004	2004
Genetics	The early stage of bacterial genome-reductive evolution in the host.	Song H, Hwang J, Yi H, Ulrich RL, Yu Y, Nierman WC, Kim HS.	PLoS Pathog	10.1371/journal.ppat.1000922	2010
Phylogeny	Restriction endonuclease analysis discriminates Bordetella bronchiseptica isolates.	Sacco RE, Register KB, Nordholm GE.	J Clin Microbiol	10.1128/jcm.38.12.4387-4393.2000	2000
Genetics	Minimum contradiction matrices in whole genome phylogenies.	Thuillard M.	Evol Bioinform Online	10.4137/ebo.s909	2008
Enzymology	Comparative genomic profiling of Dutch clinical Bordetella pertussis isolates using DNA microarrays: identification of genes absent from epidemic strains.	King AJ, van Gorkom T, Pennings JL, van der Heide HG, He Q, Diavatopoulos D, Heuvelman K, van Gent M, van Leeuwen K, Mooi FR.	BMC Genomics	10.1186/1471-2164-9-311	2008
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Metabolism	Bacterial community dynamics during start-up of a trickle-bed bioreactor degrading aromatic compounds.	Stoffels M, Amann R, Ludwig W, Hekmat D, Schleifer KH.	Appl Environ Microbiol	10.1128/aem.64.3.930-939.1998	1998
Metabolism	A novel sensor kinase is required for Bordetella bronchiseptica to colonize the lower respiratory tract.	Kaut CS, Duncan MD, Kim JY, Maclaren JJ, Cochran KT, Julio SM.	Infect Immun	10.1128/iai.00005-11	2011
Metabolism	sigE facilitates the adaptation of Bordetella bronchiseptica to stress conditions and lethal infection in immunocompromised mice.	Barchinger SE, Zhang X, Hester SE, Rodriguez ME, Harvill ET, Ades SE.	BMC Microbiol	10.1186/1471-2180-12-179	2012
	Hidden chromosome symmetry: in silico transformation reveals symmetry in 2D DNA walk trajectories of 671 chromosomes.	Poptsova MS, Larionov SA, Ryadchenko EV, Rybalko SD, Zakharov IA, Loskutov A.	PLoS One	10.1371/journal.pone.0006396	2009
Metabolism	Human Toll-like receptor 4 responses to P. gingivalis are regulated by lipid A 1- and 4'-phosphatase activities.	Coats SR, Jones JW, Do CT, Braham PH, Bainbridge BW, To TT, Goodlett DR, Ernst RK, Darveau RP.	Cell Microbiol	10.1111/j.1462-5822.2009.01349.x	2009
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Metabolism	Identification and biochemical characterization of two novel UDP-2,3-diacetamido-2,3-dideoxy-alpha-D-glucuronic acid 2-epimerases from respiratory pathogens.	Westman EL, McNally DJ, Rejzek M, Miller WL, Kannathasan VS, Preston A, Maskell DJ, Field RA, Brisson JR, Lam JS.	Biochem J	10.1042/bj20070017	2007
Genetics	The complete genome and proteome of Laribacter hongkongensis reveal potential mechanisms for adaptations to different temperatures and habitats.	Woo PC, Lau SK, Tse H, Teng JL, Curreem SO, Tsang AK, Fan RY, Wong GK, Huang Y, Loman NJ, Snyder LA, Cai JJ, Huang JD, Mak W, Pallen MJ, Lok S, Yuen KY.	PLoS Genet	10.1371/journal.pgen.1000416	2009
Genetics	Genomic insights that advance the species definition for prokaryotes.	Konstantinidis KT, Tiedje JM.	Proc Natl Acad Sci U S A	10.1073/pnas.0409727102	2005
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Phylogeny	Comparison of the genome sequence of the poultry pathogen Bordetella avium with those of B. bronchiseptica, B. pertussis, and B. parapertussis reveals extensive diversity in surface structures associated with host interaction.	Sebaihia M, Preston A, Maskell DJ, Kuzmiak H, Connell TD, King ND, Orndorff PE, Miyamoto DM, Thomson NR, Harris D, Goble A, Lord A, Murphy L, Quail MA, Rutter S, Squares R, Squares S, Woodward J, Parkhill J, Temple LM.	J Bacteriol	10.1128/jb.01927-05	2006
Metabolism	Isolation of poly-3-hydroxybutyrate metabolism genes from complex microbial communities by phenotypic complementation of bacterial mutants.	Wang C, Meek DJ, Panchal P, Boruvka N, Archibald FS, Driscoll BT, Charles TC.	Appl Environ Microbiol	10.1128/aem.72.1.384-391.2006	2006
	A complex insertion sequence cluster at a point of interaction between the linear plasmid SCP1 and the linear chromosome of Streptomyces coelicolor A3(2).	Yamasaki M, Miyashita K, Cullum J, Kinashi H.	J Bacteriol	10.1128/jb.182.11.3104-3110.2000	2000
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Enzymology	The prokaryotic enzyme DsbB may share key structural features with eukaryotic disulfide bond forming oxidoreductases.	Sevier CS, Kadokura H, Tam VC, Beckwith J, Fass D, Kaiser CA.	Protein Sci	10.1110/ps.051355705	2005
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	Molecular genetic basis of ribotyping.	Bouchet V, Huot H, Goldstein R.	Clin Microbiol Rev	10.1128/cmr.00026-07	2008
Enzymology	Comparison of PCR, culture, and direct fluorescent-antibody testing for detection of Bordetella pertussis.	Loeffelholz MJ, Thompson CJ, Long KS, Gilchrist MJ.	J Clin Microbiol	10.1128/jcm.37.9.2872-2876.1999	1999
Enzymology	Coexistence of Burkholderia, Cupriavidus, and Rhizobium sp. nodule bacteria on two Mimosa spp. in Costa Rica.	Barrett CF, Parker MA.	Appl Environ Microbiol	10.1128/aem.72.2.1198-1206.2006	2006
Phylogeny	Whole-genome analyses of speciation events in pathogenic Brucellae.	Chain PS, Comerci DJ, Tolmasky ME, Larimer FW, Malfatti SA, Vergez LM, Aguero F, Land ML, Ugalde RA, Garcia E.	Infect Immun	10.1128/iai.73.12.8353-8361.2005	2005
Metabolism	Transcriptional profiling of the iron starvation response in Bordetella pertussis provides new insights into siderophore utilization and virulence gene expression.	Brickman TJ, Cummings CA, Liew SY, Relman DA, Armstrong SK.	J Bacteriol	10.1128/jb.05136-11	2011
Pathogenicity	Morphology of cells and hemagglutinogens of Bordetella species: resolution of substructural units in fimbriae of Bordetella pertussis.	Blom J, Hansen GA, Poulsen FM.	Infect Immun	10.1128/iai.42.1.308-317.1983	1983
Metabolism	Genes involved in the synthesis and degradation of matrix polysaccharide in Actinobacillus actinomycetemcomitans and Actinobacillus pleuropneumoniae biofilms.	Kaplan JB, Velliyagounder K, Ragunath C, Rohde H, Mack D, Knobloch JK, Ramasubbu N.	J Bacteriol	10.1128/jb.186.24.8213-8220.2004	2004
Metabolism	Contribution of Bordetella filamentous hemagglutinin and adenylate cyclase toxin to suppression and evasion of interleukin-17-mediated inflammation.	Henderson MW, Inatsuka CS, Sheets AJ, Williams CL, Benaron DJ, Donato GM, Gray MC, Hewlett EL, Cotter PA.	Infect Immun	10.1128/iai.00148-12	2012
Metabolism	Heme concentration dependence and metalloporphyrin inhibition of the system I and II cytochrome c assembly pathways.	Richard-Fogal CL, Frawley ER, Feissner RE, Kranz RG.	J Bacteriol	10.1128/jb.01388-06	2007
Metabolism	A new family of membrane electron transporters and its substrates, including a new cell envelope peroxiredoxin, reveal a broadened reductive capacity of the oxidative bacterial cell envelope.	Cho SH, Parsonage D, Thurston C, Dutton RJ, Poole LB, Collet JF, Beckwith J.	mBio	10.1128/mbio.00291-11	2012
Metabolism	A novel outer-membrane anion channel (porin) as part of a putatively two-component transport system for 4-toluenesulphonate in Comamonas testosteroni T-2.	Mampel J, Maier E, Tralau T, Ruff J, Benz R, Cook AM.	Biochem J	10.1042/bj20040652	2004
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Phylogeny	Detection of Ureaplasma urealyticum by PCR and biovar determination by liquid hybridization.	Povlsen K, Jensen JS, Lind I.	J Clin Microbiol	10.1128/jcm.36.11.3211-3216.1998	1998
Genetics	Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2.	Livny J, Brencic A, Lory S, Waldor MK.	Nucleic Acids Res	10.1093/nar/gkl453	2006
Metabolism	Genomes and characterization of phages Bcep22 and BcepIL02, founders of a novel phage type in Burkholderia cenocepacia.	Gill JJ, Summer EJ, Russell WK, Cologna SM, Carlile TM, Fuller AC, Kitsopoulos K, Mebane LM, Parkinson BN, Sullivan D, Carmody LA, Gonzalez CF, LiPuma JJ, Young R.	J Bacteriol	10.1128/jb.05287-11	2011
Metabolism	Phylogenetic analysis of culturable dimethyl sulfide-producing bacteria from a spartina-dominated salt marsh and estuarine water.	Ansede JH, Friedman R, Yoch DC.	Appl Environ Microbiol	10.1128/aem.67.3.1210-1217.2001	2001
Metabolism	Cytochrome c maturation and the physiological role of c-type cytochromes in Vibrio cholerae.	Braun M, Thony-Meyer L.	J Bacteriol	10.1128/jb.187.17.5996-6004.2005	2005
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Metabolism	Activation and inactivation of Pseudomonas stutzeri methylbenzene catabolism pathways mediated by a transposable element.	Bolognese F, Di Lecce C, Galli E, Barbieri P.	Appl Environ Microbiol	10.1128/aem.65.5.1876-1882.1999	1999
	Network model of immune responses reveals key effectors to single and co-infection dynamics by a respiratory bacterium and a gastrointestinal helminth.	Thakar J, Pathak AK, Murphy L, Albert R, Cattadori IM.	PLoS Comput Biol	10.1371/journal.pcbi.1002345	2012
Enzymology	Comparison of LightCycler PCR, rapid antigen immunoassay, and culture for detection of group A streptococci from throat swabs.	Uhl JR, Adamson SC, Vetter EA, Schleck CD, Harmsen WS, Iverson LK, Santrach PJ, Henry NK, Cockerill FR.	J Clin Microbiol	10.1128/jcm.41.1.242-249.2003	2003
	Bordetella bronchiseptica-mediated cytotoxicity to macrophages is dependent on bvg-regulated factors, including pertactin.	Forde CB, Shi X, Li J, Roberts M.	Infect Immun	10.1128/iai.67.11.5972-5978.1999	1999
Genetics	Genome implosion elicits host-confinement in Alcaligenaceae: evidence from the comparative genomics of Tetrathiobacter kashmirensis, a pathogen in the making.	Ghosh W, Alam M, Roy C, Pyne P, George A, Chakraborty R, Majumder S, Agarwal A, Chakraborty S, Majumdar S, Gupta SK.	PLoS One	10.1371/journal.pone.0064856	2013
	Multiple-locus variable-number tandem repeat analysis of Dutch Bordetella pertussis strains reveals rapid genetic changes with clonal expansion during the late 1990s.	Schouls LM, van der Heide HG, Vauterin L, Vauterin P, Mooi FR.	J Bacteriol	10.1128/jb.186.16.5496-5505.2004	2004
Phylogeny	Predicting the proteins of Angomonas deanei, Strigomonas culicis and their respective endosymbionts reveals new aspects of the trypanosomatidae family.	Motta MC, Martins AC, de Souza SS, Catta-Preta CM, Silva R, Klein CC, de Almeida LG, de Lima Cunha O, Ciapina LP, Brocchi M, Colabardini AC, de Araujo Lima B, Machado CR, de Almeida Soares CM, Probst CM, de Menezes CB, Thompson CE, Bartholomeu DC, Gradia DF, Pavoni DP, Grisard EC, Fantinatti-Garboggini F, Marchini FK, Rodrigues-Luiz GF, Wagner G, Goldman GH, Fietto JL, Elias MC, Goldman MH, Sagot MF, Pereira M, Stoco PH, de Mendonca-Neto RP, Teixeira SM, Maciel TE, de Oliveira Mendes TA, Urmenyi TP, de Souza W, Schenkman S, de Vasconcelos AT.	PLoS One	10.1371/journal.pone.0060209	2013
Metabolism	Glycosyl phosphatidylinositol-anchored proteins in chemosensory signaling: antisense manipulation of Paramecium tetraurelia PIG-A gene expression.	Yano J, Rachochy V, Van Houten JL.	Eukaryot Cell	10.1128/ec.2.6.1211-1219.2003	2003
Enzymology	Identification and characterization of a unique adenosine kinase from Mycobacterium tuberculosis.	Long MC, Escuyer V, Parker WB.	J Bacteriol	10.1128/jb.185.22.6548-6555.2003	2003
Enzymology	E1 enzyme of the pyruvate dehydrogenase complex in Corynebacterium glutamicum: molecular analysis of the gene and phylogenetic aspects.	Schreiner ME, Fiur D, Holatko J, Patek M, Eikmanns BJ.	J Bacteriol	10.1128/jb.187.17.6005-6018.2005	2005
	Expression of the putative siderophore receptor gene bfrZ is controlled by the extracytoplasmic-function sigma factor BupI in Bordetella bronchiseptica.	Pradel E, Locht C.	J Bacteriol	10.1128/jb.183.9.2910-2917.2001	2001
Genetics	Highly plastic genome of Microcystis aeruginosa PCC 7806, a ubiquitous toxic freshwater cyanobacterium.	Frangeul L, Quillardet P, Castets AM, Humbert JF, Matthijs HC, Cortez D, Tolonen A, Zhang CC, Gribaldo S, Kehr JC, Zilliges Y, Ziemert N, Becker S, Talla E, Latifi A, Billault A, Lepelletier A, Dittmann E, Bouchier C, de Marsac NT.	BMC Genomics	10.1186/1471-2164-9-274	2008
Metabolism	A blueprint of ectoine metabolism from the genome of the industrial producer Halomonas elongata DSM 2581 T.	Schwibbert K, Marin-Sanguino A, Bagyan I, Heidrich G, Lentzen G, Seitz H, Rampp M, Schuster SC, Klenk HP, Pfeiffer F, Oesterhelt D, Kunte HJ.	Environ Microbiol	10.1111/j.1462-2920.2010.02336.x	2011
Phylogeny	Use of single-point genome signature tags as a universal tagging method for microbial genome surveys.	van der Lelie D, Lesaulnier C, McCorkle S, Geets J, Taghavi S, Dunn J.	Appl Environ Microbiol	10.1128/aem.72.3.2092-2101.2006	2006
	Type 1 fimbriation and phase switching in a natural Escherichia coli fimB null strain, Nissle 1917.	Stentebjerg-Olesen B, Chakraborty T, Klemm P.	J Bacteriol	10.1128/jb.181.24.7470-7478.1999	1999
	Cell-mediated immune responses in four-year-old children after primary immunization with acellular pertussis vaccines.	Ausiello CM, Lande R, Urbani F, la Sala A, Stefanelli P, Salmaso S, Mastrantonio P, Cassone A.	Infect Immun	10.1128/iai.67.8.4064-4071.1999	1999
	Structure and biological properties of solubilized envelope proteins of Bordetella pertussis.	Robinson A, Hawkins DC.	Infect Immun	10.1128/iai.39.2.590-598.1983	1983
	A census of membrane-bound and intracellular signal transduction proteins in bacteria: bacterial IQ, extroverts and introverts.	Galperin MY.	BMC Microbiol	10.1186/1471-2180-5-35	2005
Genetics	Using the nucleotide substitution rate matrix to detect horizontal gene transfer.	Hamady M, Betterton MD, Knight R.	BMC Bioinformatics	10.1186/1471-2105-7-476	2006
Metabolism	A temperature-regulated Campylobacter jejuni gluconate dehydrogenase is involved in respiration-dependent energy conservation and chicken colonization.	Pajaniappan M, Hall JE, Cawthraw SA, Newell DG, Gaynor EC, Fields JA, Rathbun KM, Agee WA, Burns CM, Hall SJ, Kelly DJ, Thompson SA.	Mol Microbiol	10.1111/j.1365-2958.2008.06161.x	2008
Genetics	Genome-wide survey of prokaryotic serine proteases: analysis of distribution and domain architectures of five serine protease families in prokaryotes.	Tripathi LP, Sowdhamini R.	BMC Genomics	10.1186/1471-2164-9-549	2008
	Molecular characterization of the Mycoplasma gallisepticum pvpA gene which encodes a putative variable cytadhesin protein.	Boguslavsky S, Menaker D, Lysnyansky I, Liu T, Levisohn S, Rosengarten R, Garcia M, Yogev D.	Infect Immun	10.1128/iai.68.7.3956-3964.2000	2000
Metabolism	A repressor protein, PhaR, regulates polyhydroxyalkanoate (PHA) synthesis via its direct interaction with PHA.	Maehara A, Taguchi S, Nishiyama T, Yamane T, Doi Y.	J Bacteriol	10.1128/jb.184.14.3992-4002.2002	2002
Phylogeny	Identification of Gram-negative non-fermenters and oxidase-positive fermenters by the Oxi/Ferm tube.	Holmes B, Dowling J, Lapage SP.	J Clin Pathol	10.1136/jcp.32.1.78	1979
	Flagellin gene transcription in Bordetella bronchiseptica is regulated by the BvgAS virulence control system.	Akerley BJ, Miller JF.	J Bacteriol	10.1128/jb.175.11.3468-3479.1993	1993
Metabolism	Evidence that the algI/algJ gene cassette, required for O acetylation of Pseudomonas aeruginosa alginate, evolved by lateral gene transfer.	Franklin MJ, Douthit SA, McClure MA.	J Bacteriol	10.1128/jb.186.14.4759-4773.2004	2004
	A second two-component regulatory system of Bordetella bronchiseptica required for bacterial resistance to oxidative stress, production of acid phosphatase, and in vivo persistence.	Jungnitz H, West NP, Walker MJ, Chhatwal GS, Guzman CA.	Infect Immun	10.1128/iai.66.10.4640-4650.1998	1998
Metabolism	RhuR, an extracytoplasmic function sigma factor activator, is essential for heme-dependent expression of the outer membrane heme and hemoprotein receptor of Bordetella avium.	Kirby AE, King ND, Connell TD.	Infect Immun	10.1128/iai.72.2.896-907.2004	2004
Metabolism	Heme utilization in Bordetella avium is regulated by RhuI, a heme-responsive extracytoplasmic function sigma factor.	Kirby AE, Metzger DJ, Murphy ER, Connell TD.	Infect Immun	10.1128/iai.69.11.6951-6961.2001	2001
	Cloning and sequencing of a Bordetella pertussis serum resistance locus.	Fernandez RC, Weiss AA.	Infect Immun	10.1128/iai.62.11.4727-4738.1994	1994
	Antibiotics for whooping cough (pertussis).	Altunaiji S, Kukuruzovic R, Curtis N, Massie J.	Cochrane Database Syst Rev	10.1002/14651858.cd004404.pub3	2007
	Controlled Human Infection Models To Accelerate Vaccine Development.	Choy RKM, Bourgeois AL, Ockenhouse CF, Walker RI, Sheets RL, Flores J.	Clin Microbiol Rev	10.1128/cmr.00008-21	2022
Enzymology	Comparison of polymerase chain reaction, culture, and western immunoblot serology for diagnosis of Bordetella pertussis infection.	Grimprel E, Begue P, Anjak I, Betsou F, Guiso N.	J Clin Microbiol	10.1128/jcm.31.10.2745-2750.1993	1993
Genetics	Characterisation of the urease gene cluster in Bordetella bronchiseptica.	McMillan DJ, Mau M, Walker MJ	Gene	10.1016/s0378-1119(97)00651-3	1998
Phylogeny	Bordetella holmesii sp. nov., a new gram-negative species associated with septicemia.	Weyant RS, Hollis DG, Weaver RE, Amin MF, Steigerwalt AG, O'Connor SP, Whitney AM, Daneshvar MI, Moss CW, Brenner DJ.	J Clin Microbiol	10.1128/jcm.33.1.1-7.1995	1995

References

#5043	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13415
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#40899	; Curators of the CIP;
#44193	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 413
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68374	Automatically annotated from API ID32E .
#68377	Automatically annotated from API NH .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121584	Collection of Institut Pasteur ; Curators of the CIP; CIP 64.11
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bordetella parapertussis (DSM 13415, ATCC 15311, CCUG 413)

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