Corynebacterium amycolatum (DSM 44374, PAP 290, Co 290)

Name: Corynebacterium amycolatum (DSM 44374, PAP 290, Co 290)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3139

Type strain

Strain Designation PAP 290, Co 290

Culture col. no. DSM 44374 PAP 290 Co 290

NCBI tax ID(s) 43765

Special Collections DSMZ

History DSMZ <- G. Wauters, UCL, Brüssel, Co 290 <- J. Verhaegen

Links

Corynebacterium amycolatum PAP 290 is a human pathogen that was isolated from blood.

human pathogen genome sequence Bacteria

Name and taxonomic classification

SI-ID 50599

DSM 44374

@ref 20215

Last LPSN update 2026-05-29 08:25:38

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium amycolatum

Full scientific name Corynebacterium amycolatum Collins et al. 1988

BacDive ID	Other strains from **Corynebacterium amycolatum** (68)	Type strain
3134	C. amycolatum S160, DSM 6922, ATCC 49368, NCFB 2768, CCUG ... (type strain)
3135	C. amycolatum PAP 291, Co 291, DSM 44375
3136	C. amycolatum PAP 197, Co 197, DSM 44371
3137	C. amycolatum PAP 232, Co 232, DSM 44372
3138	C. amycolatum PAP 272, Co272, DSM 44373
135001	C. amycolatum 104.87, CIP 102846
135002	C. amycolatum 94.87, CIP 102847
135131	C. amycolatum 202.85, CIP 101489
135362	C. amycolatum CIP 102897
135817	C. amycolatum CIP 80.54
135818	C. amycolatum CIP 80.55
135964	C. amycolatum 995.83, CIP 100613
136025	C. amycolatum CIP 101883
136055	C. amycolatum 109-86, CIP 102176
136071	C. amycolatum 273-86, CIP 102297
137191	C. amycolatum 178.85, CIP 101477
137594	C. amycolatum 266-79, CIP 79.37
137877	C. amycolatum 1040, CIP 102101
137894	C. amycolatum 54-86, CIP 102133
137914	C. amycolatum 108-86, CIP 102177
137970	C. amycolatum 312-86, CIP 102335
138019	C. amycolatum 486-86, CIP 102482
138028	C. amycolatum 531.86, CIP 102544
138053	C. amycolatum 602.86, CIP 102609
138056	C. amycolatum 619-86, CIP 102624
138746	C. amycolatum 707-86, CIP 102699
139083	C. amycolatum Vf1, CIP 52.14
139110	C. amycolatum LIB 169-87, CIP 103818
139111	C. amycolatum LIB 740-88, CIP 103819
139112	C. amycolatum LIB 551-89, CIP 103820
139114	C. amycolatum LIB 081-91, CIP 103821, ATCC 700207
139177	C. amycolatum CIP 100836, ATCC 700206
139188	C. amycolatum CIP 52.13, CCUG 38798
139211	C. amycolatum 518.85, CIP 101726
143105	C. amycolatum CCUG 17225
143587	C. amycolatum CCUG 20407
144001	C. amycolatum CCUG 22317
144002	C. amycolatum CCUG 22318
144480	C. amycolatum CCUG 25199 A
146332	C. amycolatum CCUG 30938
146983	C. amycolatum CCUG 32594
148023	C. amycolatum CCUG 34699
148024	C. amycolatum CCUG 34700
148025	C. amycolatum CCUG 34701
148326	C. amycolatum CCUG 35228
148547	C. amycolatum CCUG 35623
149006	C. amycolatum CCUG 36714
149187	C. amycolatum CCUG 37236 A
150024	C. amycolatum CCUG 38870
150158	C. amycolatum CCUG 39137
150375	C. amycolatum CCUG 39759
151090	C. amycolatum CCUG 43250
151333	C. amycolatum CCUG 43782
151449	C. amycolatum CCUG 44094
151691	C. amycolatum CCUG 44643
151821	C. amycolatum CCUG 44985
152500	C. amycolatum CCUG 46945
152980	C. amycolatum CCUG 48186
153159	C. amycolatum CCUG 48602
153513	C. amycolatum CCUG 50000
154808	C. amycolatum CCUG 55290
155049	C. amycolatum CCUG 56284
155324	C. amycolatum CCUG 57329
155334	C. amycolatum CCUG 57358
155377	C. amycolatum CCUG 57527
155580	C. amycolatum CCUG 58230
155980	C. amycolatum CCUG 59875
155991	C. amycolatum CCUG 59929

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	93.5
125438	91.064	positive
125439	97.574
125439	94.162	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
11715	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
11715	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
11715	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	93.273

Spore formation

@ref	Spore formation	Confidence
125439		93.357

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Fluids	#Blood
#Infection	#Patient	-

Isolation

11715

Sample typeblood

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
11715			2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
124043	ASM1672874v1 assembly for Corynebacterium amycolatum FDAARGOS_1107	complete	GCA_016728745	43765.100	43765	98

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1672874v1 assembly for Corynebacterium amycolatum FDAARGOS_1107
NCBI: GCA_016728745

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	93.27	no
125439	gram_stain	BacteriaNetⓘ	positive	94.16	no
125439	motility	BacteriaNetⓘ	no	97.57	no
125439	spore_formation	BacteriaNetⓘ	no	93.36	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium amycolatum strain FDAARGOS_1107 strain Not applicable
PATRIC: 43765.100

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.06	no
125438	anaerobic	anaerobicⓘ	no	94.30	no
125438	spore-forming	spore-formingⓘ	no	78.18	no
125438	aerobic	aerobicⓘ	yes	68.97	no
125438	thermophilic	thermophileⓘ	no	96.24	yes
125438	flagellated	motile2+ⓘ	no	93.50	no

Literature

References

#11715	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44374
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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