Strain identifier
BacDive ID: 3139
Type strain: 
Species: Corynebacterium amycolatum
Strain Designation: PAP 290, Co 290
Strain history: <- G. Wauters, UCL, Brüssel, Co 290 <- J. Verhaegen
NCBI tax ID(s): 43765 (species)
version 9.1 (current version)
General
@ref: 11715
BacDive-ID: 3139
DSM-Number: 44374
keywords: genome sequence, Bacteria, human pathogen
description: Corynebacterium amycolatum PAP 290 is a human pathogen that was isolated from blood.
NCBI tax id
- NCBI tax id: 43765
- Matching level: species
strain history
- @ref: 11715
- history: <- G. Wauters, UCL, Brüssel, Co 290 <- J. Verhaegen
doi: 10.13145/bacdive3139.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Corynebacteriaceae
- genus: Corynebacterium
- species: Corynebacterium amycolatum
- full scientific name: Corynebacterium amycolatum Collins et al. 1988
@ref: 11715
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Corynebacteriaceae
genus: Corynebacterium
species: Corynebacterium amycolatum
full scientific name: Corynebacterium amycolatum Collins et al. 1988
strain designation: PAP 290, Co 290
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 93.5 | |
| 69480 | 91.064 | positive |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 11715 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
| 11715 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
culture temp
- @ref: 11715
- growth: positive
- type: growth
- temperature: 37
Isolation, sampling and environmental information
isolation
- @ref: 11715
- sample type: blood
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Fluids | #Blood |
| #Infection | #Patient |
Safety information
risk assessment
- @ref: 11715
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Corynebacterium amycolatum strain FDAARGOS_1107
- accession: 43765.100
- assembly level: complete
- database: patric
- NCBI tax ID: 43765
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 91.064 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.298 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 78.182 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 68.967 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 96.238 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 93.5 | no |
External links
@ref: 11715
culture collection no.: DSM 44374
straininfo link
- @ref: 72656
- straininfo: 50599
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 11715 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44374) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44374 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 72656 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50599.1 | StrainInfo: A central database for resolving microbial strain identifiers |