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Strain identifier

BacDive ID: 3139

Type strain: No

Species: Corynebacterium amycolatum

Strain Designation: PAP 290, Co 290

Strain history: <- G. Wauters, UCL, Brüssel, Co 290 <- J. Verhaegen

NCBI tax ID(s): 43765 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 11715

BacDive-ID: 3139

DSM-Number: 44374

keywords: genome sequence, Bacteria, mesophilic, human pathogen

description: Corynebacterium amycolatum PAP 290 is a mesophilic human pathogen that was isolated from blood.

NCBI tax id

  • NCBI tax id: 43765
  • Matching level: species

strain history: <- G. Wauters, UCL, Brüssel, Co 290 <- J. Verhaegen

doi: 10.13145/bacdive3139.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Corynebacteriaceae
  • genus: Corynebacterium
  • species: Corynebacterium amycolatum
  • full scientific name: Corynebacterium amycolatum Collins et al. 1988

@ref: 11715

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Corynebacteriaceae

genus: Corynebacterium

species: Corynebacterium amycolatum

full scientific name: Corynebacterium amycolatum Collins et al. 1988

strain designation: PAP 290, Co 290

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11715TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
11715COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 11715
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 11715
  • sample type: blood

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Fluids#Blood
#Infection#Patient

Safety information

risk assessment

  • @ref: 11715
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Corynebacterium amycolatum strain FDAARGOS_1107 strain Not applicable43765.100completepatric43765
66792Bifidobacterium pseudocatenulatum TF08-3ATGCA_003436955scaffoldpatric28026

External links

@ref: 11715

culture collection no.: DSM 44374

straininfo link

@refpassport
20218http://www.straininfo.net/strains/169559
20218http://www.straininfo.net/strains/169561

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11715Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44374)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44374
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)