Strain identifier
BacDive ID: 3139
Type strain: 
Species: Corynebacterium amycolatum
Strain Designation: PAP 290, Co 290
Strain history: <- G. Wauters, UCL, Brüssel, Co 290 <- J. Verhaegen
NCBI tax ID(s): 43765 (species)
General
@ref: 11715
BacDive-ID: 3139
DSM-Number: 44374
keywords: genome sequence, Bacteria, mesophilic, human pathogen
description: Corynebacterium amycolatum PAP 290 is a mesophilic human pathogen that was isolated from blood.
NCBI tax id
- NCBI tax id: 43765
- Matching level: species
strain history: <- G. Wauters, UCL, Brüssel, Co 290 <- J. Verhaegen
doi: 10.13145/bacdive3139.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Corynebacteriaceae
- genus: Corynebacterium
- species: Corynebacterium amycolatum
- full scientific name: Corynebacterium amycolatum Collins et al. 1988
@ref: 11715
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Corynebacteriaceae
genus: Corynebacterium
species: Corynebacterium amycolatum
full scientific name: Corynebacterium amycolatum Collins et al. 1988
strain designation: PAP 290, Co 290
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 11715 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
| 11715 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
culture temp
- @ref: 11715
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 11715
- sample type: blood
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Fluids | #Blood |
| #Infection | #Patient |
Safety information
risk assessment
- @ref: 11715
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Corynebacterium amycolatum strain FDAARGOS_1107 strain Not applicable | 43765.100 | complete | patric | 43765 |
| 66792 | Bifidobacterium pseudocatenulatum TF08-3AT | GCA_003436955 | scaffold | patric | 28026 |
External links
@ref: 11715
culture collection no.: DSM 44374
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/169559 |
| 20218 | http://www.straininfo.net/strains/169561 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 11715 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44374) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44374 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |