Name: Eggerthella lenta MSMC 77-67
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3055

Type strain:

Species: Eggerthella lenta

Strain Designation: MSMC 77-67

Culture col. no.: DSM 15644, ATCC 43055, CCUG 34779, CIP 104211, CCM 4714

Strain history: CIP <- 1994, ATCC <- R.J. Zabransky: strain MSMC 77-67

NCBI tax ID(s): 84112 (species)

SI-ID 46035

ATCC 43055, CIP 104211, CCUG 34779, CCM 4714, DSM 15644, VTT E-052789

Special Collections

Other strains from Eggerthella lenta

Section

Eggerthella lenta MSMC 77-67 is an anaerobe human pathogen that was isolated from abdominal wound.

anaerobe
human pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Coriobacteriia*
	Order	*Eggerthellales*
	Family	*Eggerthellaceae*
	Genus	*Eggerthella*
	Species	**Eggerthella lenta**
	Full Scientific Name (LPSN)	Eggerthella lenta (Eggerth 1935) Wade et al. 1999

	Synonym	Eubacterium lentum
	Synonym	Eggerthella lenta
	Synonym	"Bacteroides* lentus"*

Information on morphological and physiological properties Morphology

[Ref.: #120580]	Gram stain	negative

[Ref.: #120580]	Cell shape	rod-shaped

[Ref.: #120580]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6014]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #6014]

Culture medium growth

[Ref.: #6014]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6014]

Culture medium composition

expand / minimize

[Ref.: #6014]

Culture medium

EUBACTERIUM LENTUM MEDIUM (DSMZ Medium 209)

[Ref.: #6014]

Culture medium growth

[Ref.: #6014]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6014]

Culture medium composition

expand / minimize

[Ref.: #39743]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #39743]

Culture medium growth

[Ref.: #39743]

Culture medium composition

expand / minimize

[Ref.: #120580]

Culture medium

CIP Medium 20

[Ref.: #120580]

Culture medium growth

[Ref.: #120580]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #6014]	growth	37 °C
[Ref.: #39743]	growth	37 °C
[Ref.: #52315]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6014]	Oxygen tolerance	anaerobe
[Ref.: #52315]	Oxygen tolerance	anaerobe
[Ref.: #120580]	Oxygen tolerance	anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	+	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #120580]	esculin ChEBI	-	hydrolysis
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #120580]	nitrate ChEBI	+	reduction
[Ref.: #120580]	nitrate ChEBI	+	respiration
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #120580]	nitrite ChEBI	-	reduction
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #120580]		indole ChEBI	no
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym, API rID32A
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym, API rID32A
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym, API rID32A
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120580]	amylase	-
[Ref.: #68380]	arginine dihydrolase	+	3.5.3.6	* from API rID32A
[Ref.: #120580]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API rID32A
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API rID32A
[Ref.: #120580]	caseinase	-	3.4.21.50
[Ref.: #120580]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #120580]	DNase	-
[Ref.: #120580]	gelatinase	-
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #120580]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym, API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #120580]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API rID32A
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120580]	oxidase	-
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #120580]	protease	-
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #120580]	tween esterase	-
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #120580]	urease	-	3.5.1.5
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #52315]

Fatty acid	Percentage	ECL
C17:1 ISO I/C16:0 DMA	32.4	16.481
C14:0	14	14
C16:0	10.9	16
C15:0 ANTEISO	5.9	14.711
C16:0 aldehyde	5.1	14.949
C14:0 ISO	4.5	13.618
C18:2 ω6,9c/C18:0 ANTE	4.5	17.724
unknown 18.194	3.7	18.194
C18:1 ω9c	3.1	17.769
C13:0 3OH/C15:1 i I/H	3.1	14.469
C14:0 3OH/C16:1 ISO I	1.3	15.485
C15:0	1.2	15
C12:0	1.1	12
C19:1 ISO I	1.1	18.473
C15:0 ISO	1.1	14.621
C16:1 ω7c	0.7	15.819
C13:0 iso	0.6	12.612
C13:1 at 12-13	0.5	12.931
Unidentified	0.5	16.11
C13:0	0.5	13
Unidentified	0.4	18.324
Unidentified	0.4	13.94
C19:0 ISO	0.4	18.633
C17:0	0.4	17
C18:0	0.4	18
C17:1 ω9c ISO	0.4	16.416
C13:0 ANTEISO	0.4	12.701
C16:0 iso	0.4	15.626
C18:1 ISO H	0.3	17.46
Unidentified	0.3	14.894
Unidentified	0.3	15.939
C17:0 anteiso	0.2	16.722

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #6014]	13287	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #6014]	12617	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #52315]	4940	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #52315]	1398	-	-	+	+	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-
[Ref.: #120580]	7841	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6014]	Sample type/isolated from	abdominal wound
[Ref.: #6014]	Geographic location (country and/or sea, region)	Wisconsin
[Ref.: #6014]	Country	USA
[Ref.: #6014]	Country ISO 3 Code	USA
[Ref.: #6014]	Continent	North America

[Ref.: #52315]	Sample type/isolated from	Human wound,abdominal

[Ref.: #120580]	Sample type/isolated from	Human, Abdominal wound
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Other	#Abdomen
#Host Body-Site	#Other	#Wound

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6014]	Pathogenicity (human)	yes
[Ref.: #6014]	Pathogenicity (animal)	yes
[Ref.: #6014]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #120580]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Eggerthella lenta partial 16S rRNA gene, strain ATCC 43055	FM207094	383	GenBank ENA	84112 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Eggerthella lenta DSM 15644	GCA_003340005	contig	GenBank ENA	84112 tax ID	*
[Ref.: #66792]	Eggerthella lenta strain DSM 15644	84112.14	wgs	PATRIC	84112 tax ID	*

[Ref.: #6014]

GC-content

62 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Eggerthella lenta strain DSM 15644 PATRIC: 84112.14
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	86	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Eggerthella lenta strain DSM 15644 PATRIC: 84112.14
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	72.56	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	89.636	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	93.948	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	71	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.617	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	73.111	no

Availability in culture collections External links

[Ref.: #6014]

Culture collection no.

DSM 15644, ATCC 43055, CCUG 34779, CIP 104211, CCM 4714

[Ref.: #72575]

SI-ID 46035

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Quality control criteria for testing the susceptibility of anaerobic bacteria to meropenem.	Zabransky RJ, Bayola-Mueller L, Jenkins SG, Pitkin DR, Schreckenberger PC, Celig DM, Spiegel CA	J Clin Microbiol	10.1128/jcm.28.12.2804-2805.1990	1990	*
Pathogenicity	Eubacterium lentum ATCC 43055, a new reference strain for quality control of anaerobic susceptibility tests.	Barry AL, Zabransky RJ	J Clin Microbiol	10.1128/jcm.28.10.2375-2376.1990	1990	*

References

#6014

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15644

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39743 ; Curators of the CIP;
#52315 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 34779

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68380

Automatically annotated from API rID32A .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72575

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID46035.1 )

#120580 Collection of Institut Pasteur ; Curators of the CIP; CIP 104211
* These data were automatically processed and therefore are not curated

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Eggerthella lenta strain DSM 15644

Eggerthella lenta strain DSM 15644

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