Eggerthella lenta (DSM 110922, RC4/6F)

Name: Eggerthella lenta (DSM 110922, RC4/6F)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158980

Type strain

Strain Designation RC4/6F

Culture col. no. DSM 110922 RC4/6F

NCBI tax ID(s) 84112

Special Collections DSMZ DZIF

History <- J. Bisanz and P. J. Turnbaugh, University of California, San Francisco, USA;

Links

Eggerthella lenta RC4/6F is a human pathogen that was isolated from Colon Tissue.

human pathogen genome sequence Bacteria

Name and taxonomic classification

SI-ID 405338

DSM 110922

@ref 20215

Last LPSN update 2026-02-09 11:38:29

Domain Bacteria

Phylum Actinomycetota

Class Coriobacteriia

Order Eggerthellales

Family Eggerthellaceae

Genus Eggerthella

Species Eggerthella lenta

Full scientific name Eggerthella lenta (Eggerth 1935) Wade et al. 1999

Synonyms (3)

Eubacterium lentum
Eggerthella lenta
"Bacteroides lentus"

BacDive ID	Other strains from **Eggerthella lenta** (66)	Type strain
3054	E. lenta 1899 B, CCUG 17323 A, DSM 2243, ATCC 25559, ... (type strain)
3055	E. lenta MSMC 77-67, DSM 15644, ATCC 43055, CCUG 34779, ...
147535	E. lenta CCUG 33760
148972	E. lenta CCUG 36662
150615	E. lenta CCUG 41760
151045	E. lenta CCUG 43153
151060	E. lenta CCUG 43187
151298	E. lenta CCUG 43682
151956	E. lenta CCUG 45342 C
152022	E. lenta CCUG 45577 A
152098	E. lenta CCUG 45737
152100	E. lenta CCUG 45762
152218	E. lenta CCUG 46141
152391	E. lenta CCUG 46647
152419	E. lenta CCUG 46751
152542	E. lenta CCUG 47030
153093	E. lenta CCUG 48467
153207	E. lenta CCUG 48755
153218	E. lenta CCUG 48783
153311	E. lenta CCUG 49066
153520	E. lenta CCUG 50030
153880	E. lenta CCUG 51488
153951	E. lenta CCUG 51738
154043	E. lenta CCUG 52118
154480	E. lenta CCUG 53778
154600	E. lenta CCUG 54550
154638	E. lenta CCUG 54678
154649	E. lenta CCUG 54751
154730	E. lenta CCUG 55004
155569	E. lenta CCUG 58169
155751	E. lenta CCUG 59206
155771	E. lenta CCUG 59263
155822	E. lenta CCUG 59395
156177	E. lenta CCUG 60629
156247	E. lenta CCUG 60856
156248	E. lenta CCUG 60857
156407	E. lenta CCUG 61595
156486	E. lenta CCUG 62015
158962	E. lenta FAA 1-1-60A, FAA 1-1-60AUCSF, DSM 110904
158963	E. lenta 11C, DSM 110905
158964	E. lenta FAA 1-3-56, DSM 110906
158965	E. lenta 14A, DSM 110907
158966	E. lenta 22C, DSM 110908
158967	E. lenta 28B, DSM 110909
158968	E. lenta 32-6-I-6 NA, DSM 110910
158969	E. lenta A2, DSM 110911
158970	E. lenta AB12 #2, DSM 110912
158971	E. lenta AB8 #2, DSM 110913
158972	E. lenta AN51LG, DSM 110914
158973	E. lenta CC7/5 D5 2, DSM 110915
158974	E. lenta CC8/2 BHI2, DSM 110916
158975	E. lenta CC8/6 D5 4, DSM 110917
158976	E. lenta RJX1626, DSM 110918
158977	E. lenta ElUC2, DSM 110919
158978	E. lenta ElUC5, DSM 110920
158979	E. lenta MR1 #12, DSM 110921
158981	E. lenta W1 BHI 6, DSM 110923
158982	E. lenta OB21 GAM31, DSM 110928
161029	E. lenta JCM 10763
161030	E. lenta JCM 10764
161031	E. lenta JCM 10765
161032	E. lenta JCM 10766
161033	E. lenta JCM 10767
161034	E. lenta JCM 10768
161035	E. lenta JCM 10769
161037	E. lenta JCM 10771

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	97.4

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65803	BHI MEDIUM (DSMZ Medium 215)		Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215; with strain-specific modifications) Composition: Brain heart infusion 37.0 g/l Arginine 10.0 g/l Distilled water
65803	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
65803	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	anaerobe	90.629

Spore formation

@ref	Spore formation	Confidence
125439		99.4

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	+	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68380	alpha-glucosidase	-	3.2.1.20	from API rID32A
68380	arginine dihydrolase	+	3.5.3.6	from API rID32A
68380	beta-galactosidase	-	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
65803	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
65803	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Gastrointestinal tract	#Large intestine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65803	Colon Tissue	Vancouver, British Columbia	Canada	CAN	North America

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
65803			2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM333991v1 assembly for Eggerthella lenta RC4/6F	contig	GCA_003339915	84112.10	84112	65.91

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Eggerthella lenta RC4/6F
NCBI: GCA_003339915

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.40	no
125439	motility	BacteriaNetⓘ	yes	84.90	no
125439	gram_stain	BacteriaNetⓘ	negative	97.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	70.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Eggerthella lenta RC4/6F
NCBI: GCA_003339915.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	73.11	no
125438	anaerobic	anaerobicⓘ	yes	90.63	no
125438	aerobic	aerobicⓘ	no	93.48	no
125438	spore-forming	spore-formingⓘ	no	70.62	no
125438	thermophilic	thermophileⓘ	no	93.63	no
125438	flagellated	motile2+ⓘ	no	73.50	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65803	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 110922
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68380	Automatically annotated from API rID32A .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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