Name: Atopobium minutum DSM 20585
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3038

Type strain:

Species: Atopobium minutum

Culture col. no.: DSM 20585, VPI 7937

Strain history: <- E.P. Cato, VPI 7937

NCBI tax ID(s): 1381 (species)

SI-ID 49651

DSM 20585

Other strains from Atopobium minutum

A. minutum DSM 20586, ATCC 33267, CCUG 31167, ... (type strain)

Section

Atopobium minutum DSM 20585 is an anaerobe, mesophilic bacterium that was isolated from sump tube wound.

anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Coriobacteriia*
	Order	*Coriobacteriales*
	Family	*Atopobiaceae*
	Genus	*Atopobium*
	Species	**Atopobium minutum**
	Full Scientific Name (LPSN)	Atopobium minutum (Hauduroy et al. 1937) Collins and Wallbanks 1993

	Synonym	Lactobacillus minutus
	Synonym	"Bacteroides* minutum"*

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8935]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #8935]

Culture medium growth

[Ref.: #8935]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8935]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8935]			growth	37 °C

[Ref.: #8935]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8935]

Oxygen tolerance

anaerobe

[Ref.: #8935]	Murein short key	A21.09
[Ref.: #8935]	Murein types	A4ß L-Orn-L-Ser-D-Glu

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8935]	Sample type/isolated from	sump tube wound
* marker position based on {}

Isolation sources categories

#Infection	#Medical device	#Catheter
#Host Body-Site	#Other	#Wound

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MF375481 (>99% sequence identity) for Atopobium minutum from Microbeatlas

Aquatic Samples	84
Soil Samples	136
Animal Samples	5429
Plant Samples	13
Total Samples	5662

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8935]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8935]	Atopobium minutum strain DSM 20585 16S ribosomal RNA gene, partial sequence	MF375481	1338	ENA	1381 tax ID

Availability in culture collections External links

[Ref.: #8935]

Culture collection no.

DSM 20585, VPI 7937

[Ref.: #72558]

SI-ID 49651

References

#8935

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20585

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#72558

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49651.1 )

* These data were automatically processed and therefore are not curated

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