Atopobium minutum (DSM 20586, ATCC 33267, CCUG 31167)

Name: Atopobium minutum (DSM 20586, ATCC 33267, CCUG 31167)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3039

Type strain

Culture col. no. DSM 20586 ATCC 33267 CCUG 31167 LMG 9439 CIP 109876 4 more

NCBI tax ID(s) 1381

Special Collections DSMZ CCUG JCM CIP

History DSMZ <- E.P. Cato, VPI 9428 JCM <-- ATCC 33267 <-- W. E. C. Moore VPI 9428 <-- D. W. Lambe, Jr.. CIP <- 2008, CCUG <- 1993, ATCC <- W.E.C. Moore, VPI <- D.W. Lambe Jr: strain 31167

Links

Atopobium minutum DSM 20586 is an anaerobe, Gram-positive, rod-shaped bacterium that was isolated from abscess.

Gram-positive rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 3327

LMG 9439,ATCC 33267,DSM 20586,NCFB 2751,CCUG 31167,JCM 1118,NCIMB 702751,NCDO2751,KCTC 5038,CIP 109876

@ref 20215

Last LPSN update 2026-05-29 08:25:37

Domain Bacteria

Phylum Actinomycetota

Class Coriobacteriia

Order Coriobacteriales

Family Atopobiaceae

Genus Atopobium

Species Atopobium minutum

Full scientific name Atopobium minutum (Hauduroy et al. 1937) Collins and Wallbanks 1993

Synonyms (2)

"Bacteroides minutum"
Lactobacillus minutus

BacDive ID	Other strains from **Atopobium minutum** (1)	Type strain
3038	A. minutum DSM 20585, VPI 7937

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
120964	positive	rod-shaped
125438			92
125439	negative		99.403

Colony morphology

50458

Incubation period2 days

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
8936	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
8936	PYG MEDIUM (MODIFIED) (DSMZ Medium 104)	Medium recipe at MediaDive	Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
36588	MEDIUM 6 - Columbia agar with 10 % horse blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
120964	CIP Medium 10	Medium recipe at CIP
120964	CIP Medium 6	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
8936	positive	growth	37
36588	positive	growth	37
50458	positive	growth	37
67770	positive	growth	37
120964	positive	growth	30-37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
8936	anaerobe
50458	anaerobe
125439	facultative anaerobe	91.564

Spore formation

@ref	Spore formation	Confidence
125439		99.981

Murein

@ref	Murein short key	Type
8936	A21.09	A4ß L-Orn-L-Ser-D-Glu

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	+	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
120964	17632 ChEBI	nitrate	-	reduction
120964	16301 ChEBI	nitrite	-	reduction
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test	Voges-proskauer-test
120964	15688 ChEBI	acetoin		-
68380	35581 ChEBI	indole	-		from API rID32A

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
120964	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68380	alpha-glucosidase	-	3.2.1.20	from API rID32A
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68380	arginine dihydrolase	+	3.5.3.6	from API rID32A
68382	beta-galactosidase	-	3.2.1.23	from API zym
68380	beta-galactosidase	-	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68382	beta-glucosidase	-	3.2.1.21	from API zym
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
120964	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	+		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	+		from API rID32A
68382	leucine arylamidase	+	3.4.11.1	from API zym
68380	leucine arylamidase	+	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68382	lipase (C 14)	-		from API zym
120964	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120964	ornithine decarboxylase	-	4.1.1.17
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	+	3.4.19.3	from API rID32A
68382	trypsin	-	3.4.21.4	from API zym
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	+		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120964	-	-	+	+	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
8936	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	+	-	+	-	-	+/-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Other	#Abscess

Isolation

@ref	Sample type	Isolation date
8936	abscess
50458	Perineal abscess
67770	Perineal abscess
120964	Perineal abscess	1937

Taxonmaps

69479

Global distribution of 16S sequence LC036309 (>99% sequence identity) for Atopobium minutum from Microbeatlas

Aquatic Samples	84
Soil Samples	136
Animal Samples	5429
Plant Samples	13
Total Samples	5662

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8936	2	Risk group (German classification) According to TRBA 466
120964	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2634166360 annotated assembly for Atopobium minutum DSM 20586	contig	GCA_900105895	1381.4	2634166360	1381	77.9
67770	ASM143701v1 assembly for Atopobium minutum DSM 20586	scaffold	GCA_001437015	1381.3	2667527893	1381	69.45

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Atopobium minutum partial 16S rRNA gene, type strain DSM 20586T	FN178468	1433	1381
20218	Atopobium minutum strain DSM 20586 16S ribosomal RNA gene, partial sequence	HM007583	1345	1381
8936	A.minutum 16S rRNA	X67148	1454	1381
67770	Atopobium minutum gene for 16S ribosomal RNA, partial sequence, strain: JCM 1118	LC036309	1481	1381

GC content

@ref	GC-content (mol%)	Method
8936	46.6
67770	44	thermal denaturation, midpoint method (Tm)
67770	46.6	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2634166360 annotated assembly for Atopobium minutum DSM 20586
NCBI: GCA_900105895

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	91.56	no
125439	gram_stain	BacteriaNetⓘ	negative	99.40	no
125439	motility	BacteriaNetⓘ	yes	66.96	no
125439	spore_formation	BacteriaNetⓘ	no	99.98	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Atopobium minutum strain DSM 20586
PATRIC: 1381.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	84.78	no
125438	anaerobic	anaerobicⓘ	yes	87.27	yes
125438	spore-forming	spore-formingⓘ	no	87.57	no
125438	aerobic	aerobicⓘ	no	95.85	no
125438	thermophilic	thermophileⓘ	no	90.48	yes
125438	flagellated	motile2+ⓘ	no	92.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera.	Sun Z, Harris HM, McCann A, Guo C, Argimon S, Zhang W, Yang X, Jeffery IB, Cooney JC, Kagawa TF, Liu W, Song Y, Salvetti E, Wrobel A, Rasinkangas P, Parkhill J, Rea MC, O'Sullivan O, Ritari J, Douillard FP, Paul Ross R, Yang R, Briner AE, Felis GE, de Vos WM, Barrangou R, Klaenhammer TR, Caufield PW, Cui Y, Zhang H, O'Toole PW.	Nat Commun	10.1038/ncomms9322	2015
Metabolism	Intestinal integrity and Akkermansia muciniphila, a mucin-degrading member of the intestinal microbiota present in infants, adults, and the elderly.	Collado MC, Derrien M, Isolauri E, de Vos WM, Salminen S.	Appl Environ Microbiol	10.1128/aem.01477-07	2007
Pathogenicity	Susceptibility testing of Atopobium vaginae for dequalinium chloride.	Lopes dos Santos Santiago G, Grob P, Verstraelen H, Waser F, Vaneechoutte M.	BMC Res Notes	10.1186/1756-0500-5-151	2012
Phylogeny	Distribution and phylogenetic analysis of family 19 chitinases in Actinobacteria.	Kawase T, Saito A, Sato T, Kanai R, Fujii T, Nikaidou N, Miyashita K, Watanabe T.	Appl Environ Microbiol	10.1128/aem.70.2.1135-1144.2004	2004
	Atopobium minutum: An uncommon culprit of severe bacteremia and empyema: A case report and literature review.	Karroum PJ, Padda I, Taik S, Piccione G, Fabian D, Kavarthapu A, Tantry B, Mahmoud M, Vandenborn S, Otiwaah J, Diaz K.	Radiol Case Rep	10.1016/j.radcr.2024.06.020	2024
	Gut microbiota profiles associated with persistent anal HPV infection in men who have sex with men.	Yang H, Bian J, Yu W, Asilibieke S, Tian T, Zhang W, Lynn HS, He J, Dai J, Zhang G.	BMC Infect Dis	10.1186/s12879-025-11624-9	2025
Phylogeny	Phylogenetic Analysis of the Genes in D-Ala-D-Lactate Synthesizing Glycopeptide Resistance Operons: The Different Origins of Functional and Regulatory Genes.	Kardos G, Laczko L, Kaszab E, Timmer B, Szarka K, Prepost E, Banyai K.	Antibiotics (Basel)	10.3390/antibiotics13070573	2024
Genetics	Metagenomic analysis reveals the novel role of vaginal Lactobacillus iners in Chinese healthy pregnant women	Wang X, Jiang Q, Tian X, Chen W, Mai J, Lin G, Huo Y, Zheng H, Yan D, Wang X, Li T, Gao Y, Mou X, Zhao W.	NPJ Biofilms Microbiomes		2025
	Computational prediction of new therapeutic effects of probiotics.	Sulaimany S, Farahmandi K, Mafakheri A.	Sci Rep	10.1038/s41598-024-62796-4	2024
Phylogeny	Identification of colorectal cancer progression-associated intestinal microbiome and predictive signature construction.	Liu J, Huang X, Chen C, Wang Z, Huang Z, Qin M, He F, Tang B, Long C, Hu H, Pan S, Wu J, Tang W.	J Transl Med	10.1186/s12967-023-04119-1	2023
Transcriptome	Placental TLR recognition of salivary and subgingival microbiota is associated with pregnancy complications.	Pax K, Buduneli N, Alan M, Meric P, Gurlek O, Dabdoub SM, Kumar PS.	Microbiome	10.1186/s40168-024-01761-9	2024
	Insights into the assembly of the neovaginal microbiota in Mayer-Rokitansky-Küster-Hauser (MRKH) syndrome patients.	Chen N, Hao L, Zhang Z, Qin C, Jie Z, Pan H, Duan J, Huang X, Zhang Y, Gao H, Lu R, Sun T, Yang H, Shi J, Liang M, Guo J, Gao Q, Zhao X, Dou Z, Xiao L, Zhang S, Jin X, Xu X, Yang H, Wang J, Jia H, Zhang T, Kristiansen K, Chen C, Zhu L.	Nat Commun	10.1038/s41467-024-52102-1	2024
Enzymology	Sepsis with an Atopobium-like species in a patient with Fournier's gangrene.	Oyaert M, Cools P, Breyne J, Heyvaert G, Vandewiele A, Vaneechoutte M, Vervaeke S, De Laere E.	J Clin Microbiol	10.1128/jcm.02310-13	2014
Pathogenicity	Clostridium clostridioforme and Atopobium minutum clinical isolates with vanB-type resistance in France.	Marvaud JC, Mory F, Lambert T.	J Clin Microbiol	10.1128/jcm.00308-11	2011
	Differential induction of apoptosis in human colonic carcinoma cells (Caco-2) by Atopobium, and commensal, probiotic and enteropathogenic bacteria: mediation by the mitochondrial pathway.	Altonsy MO, Andrews SC, Tuohy KM.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2009.11.015	2010
Phylogeny	Effect of metronidazole on vaginal microbiota associated with asymptomatic bacterial vaginosis.	Ruiz-Perez D, Coudray MS, Colbert B, Krupp K, Kumari H, Stebliankin V, Mathee K, Cook RL, Schwebke J, Narasimhan G, Madhivanan P.	Access Microbiol	10.1099/acmi.0.000226	2021
	Oral Health of Patients Treated with Acrylic Partial Dentures Using a Toothpaste Containing Bee Product.	Wiatrak K, Morawiec T, Roj R, Mertas A, Machorowska-Pieniazek A, Kownacki P, Tanasiewicz M, Skucha-Nowak M, Baron S, Piekarz T, Wrzol M, Bogacz M, Kasperski J, Niedzielska I.	Evid Based Complement Alternat Med	10.1155/2017/4034179	2017
Enzymology	First report of Atopobium vaginae bacteremia with fetal loss after chorionic villus sampling.	Knoester M, Lashley LE, Wessels E, Oepkes D, Kuijper EJ.	J Clin Microbiol	10.1128/jcm.01655-10	2011
Biotechnology	Chemical Structure of Stabilizing Layers of Negatively Charged Silver Nanoparticles as an Effector of Shifts in Soil Bacterial Microbiome under Short-Term Exposure.	Przemieniecki SW, Ocwieja M, Ciesielski S, Halecki W, Matras E, Gorczyca A.	Int J Environ Res Public Health	10.3390/ijerph192114438	2022
Enzymology	Tuboovarian abscess caused by Atopobium vaginae following transvaginal oocyte recovery.	Geissdorfer W, Bohmer C, Pelz K, Schoerner C, Frobenius W, Bogdan C.	J Clin Microbiol	10.1128/jcm.41.6.2788-2790.2003	2003
Phylogeny	High mortality associated with Catabacter hongkongensis bacteremia.	Lau SK, Fan RY, Lo HW, Ng RH, Wong SS, Li IW, Wu AK, Ng KH, Tseung S, Lee RA, Fung KS, Que TL, Yuen KY, Woo PC.	J Clin Microbiol	10.1128/jcm.00128-12	2012
	Ammonia production by ruminal microorganisms and enumeration, isolation, and characterization of bacteria capable of growth on peptides and amino acids from the sheep rumen.	Eschenlauer SC, McKain N, Walker ND, McEwan NR, Newbold CJ, Wallace RJ.	Appl Environ Microbiol	10.1128/aem.68.10.4925-4931.2002	2002
	Identification of the microbiota in carious dentin lesions using 16S rRNA gene sequencing.	Obata J, Takeshita T, Shibata Y, Yamanaka W, Unemori M, Akamine A, Yamashita Y.	PLoS One	10.1371/journal.pone.0103712	2014
	Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation.	Vitreschak AG, Rodionov DA, Mironov AA, Gelfand MS.	Nucleic Acids Res	10.1093/nar/gkf433	2002
Metabolism	Comparative genomic analysis of T-box regulatory systems in bacteria.	Vitreschak AG, Mironov AA, Lyubetsky VA, Gelfand MS.	RNA	10.1261/rna.819308	2008
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Phylogeny	Description of an anaerobic actinobacterium, Kribbibacterium absianum gen. nov., sp. nov., a new member of the novel family Kribbibacteriaceae fam. nov., and reclassification of the genera Granulimonas and Leptogranulimonas.	Bai L, Paek J, Shin Y, Kim H, Kim SH, Shin JH, Kook JK, Chang YH.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006382	2024
Genetics	Two new bacteria isolated from vagina of a patient with vaginosis: Atopobium massiliense sp. nov. and Butyricimonas vaginalis sp. nov.	Bordigoni A, Lo CI, Yimagou EK, Nicaise B, Diop K, Raoult D, Desnues C, Fenollar F.	New Microbes New Infect	10.1016/j.nmni.2020.100771	2020
Phylogeny	Atopobium deltae sp. nov., isolated from the blood of a patient with Fournier's gangrene.	Cools P, Oyaert M, Vaneechoutte M, De Laere E, Vervaeke S.	Int J Syst Evol Microbiol	10.1099/ijs.0.065243-0	2014
Genetics	Libanicoccus massiliensis gen. nov., sp. nov., a new bacterium isolated from human stool.	Bilen M, Cadoret F, Richez M, Tomei E, Daoud Z, Raoult D, Fournier PE.	New Microbes New Infect	10.1016/j.nmni.2017.11.001	2018
Phylogeny	Olsenella umbonata sp. nov., a microaerotolerant anaerobic lactic acid bacterium from the sheep rumen and pig jejunum, and emended descriptions of Olsenella, Olsenella uli and Olsenella profusa.	Kraatz M, Wallace RJ, Svensson L.	Int J Syst Evol Microbiol	10.1099/ijs.0.022954-0	2011
Phylogeny	Catabacter hongkongensis gen. nov., sp. nov., isolated from blood cultures of patients from Hong Kong and Canada.	Lau SK, McNabb A, Woo GK, Hoang L, Fung AM, Chung LM, Woo PC, Yuen KY.	J Clin Microbiol	10.1128/jcm.01831-06	2007

References

#8936	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20586
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#36588	; Curators of the CIP;
#50458	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 31167
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68380	Automatically annotated from API rID32A .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120964	Collection of Institut Pasteur ; Curators of the CIP; CIP 109876
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Atopobium minutum (DSM 20586, ATCC 33267, CCUG 31167)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Murein

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900105895

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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