Name: Conexibacter arvalis KV-962
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3037

Type strain:

Species: Conexibacter arvalis

Strain Designation: KV-962

Culture col. no.: DSM 23288, NBRC 106558

Strain history: <- Y. Takahashi, Kitasato Inst., Tokyo, Japan; KV-962 <- T. Seki

NCBI tax ID(s): 912552 (species)

SI-ID 399136

DSM 23288

Section

Conexibacter arvalis KV-962 is an aerobe, mesophilic, motile bacterium that was isolated from soil.

motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Thermoleophilia*
	Order	*Solirubrobacterales*
	Family	*Conexibacteraceae*
	Genus	*Conexibacter*
	Species	**Conexibacter arvalis**
	Full Scientific Name (LPSN)	Conexibacter arvalis Seki et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %98.532

[Ref.: #30438]	Cell length	1.95 µm

[Ref.: #30438]	Cell width	0.9 µm

[Ref.: #30438]	Cell shape	rod-shaped

[Ref.: #30438]	Motility	yes
[Ref.: #69480]	Motility	no Confidence in %93.965

[Ref.: #16776]

Incubation period

3-7 days

[Ref.: #30438]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16776]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #16776]

Culture medium growth

[Ref.: #16776]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16776]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16776]			growth	28 °C
[Ref.: #30438]			growth	05-46 °C

[Ref.: #16776]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #30438]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30438]

Oxygen tolerance

aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.948

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30438]		NaCl		growth	<4	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30438]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #30438]	fucose ChEBI	+	carbon source
[Ref.: #30438]	glucose ChEBI	+	carbon source
[Ref.: #30438]	glycerol ChEBI	+	carbon source
[Ref.: #30438]	L-arabitol ChEBI	+	carbon source
[Ref.: #30438]	mannose ChEBI	+	carbon source
[Ref.: #30438]	nitrate ChEBI	+	reduction
[Ref.: #30438]	rhamnose ChEBI	+	carbon source
[Ref.: #30438]	salicin ChEBI	+	carbon source
[Ref.: #30438]	trehalose ChEBI	+	carbon source
[Ref.: #30438]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30438]	acid phosphatase	+	3.1.3.2
[Ref.: #30438]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30438]	alpha-galactosidase	+	3.2.1.22
[Ref.: #30438]	catalase	+	1.11.1.6
[Ref.: #30438]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16776]	Sample type/isolated from	soil
[Ref.: #16776]	Geographic location (country and/or sea, region)	Saitama prefecture
[Ref.: #16776]	Country	Japan
[Ref.: #16776]	Country ISO 3 Code	JPN
[Ref.: #16776]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16776]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16776]	Conexibacter arvalis gene for 16S rRNA, partial sequence, strain: KV-962	AB597950	1474	ENA	912552 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Conexibacter arvalis DSM 23288	GCA_014199525	scaffold	GenBank	912552 tax ID	*
[Ref.: #66792]	Conexibacter arvalis strain DSM 23288	912552.3	wgs	PATRIC	912552 tax ID	*
[Ref.: #66792]	Conexibacter arvalis DSM 23288	2828580265	draft	JGI IMG/M	912552 tax ID	*

[Ref.: #16776]	GC-content	74 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30438]	GC-content	74-75 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Conexibacter arvalis DSM 23288 NCBI: GCA_014199525.1
[Ref.: #69481]	spore-forming	yes	71	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Conexibacter arvalis DSM 23288 NCBI: GCA_014199525.1
[Ref.: #69480]	flagellated	no	92.93	no
[Ref.: #69480]	gram-positive	yes	85.018	no
[Ref.: #69480]	anaerobic	no	95.411	no
[Ref.: #69480]	aerobic	yes	82.186	yes
[Ref.: #69480]	halophile	no	87.586	no
[Ref.: #69480]	spore-forming	no	90.442	no
[Ref.: #69480]	glucose-util	yes	83.759	yes
[Ref.: #69480]	thermophile	no	95.079	yes
[Ref.: #69480]	motile	yes	78.391	yes
[Ref.: #69480]	glucose-ferment	no	86.794	no

Availability in culture collections External links

[Ref.: #16776]

Culture collection no.

DSM 23288, NBRC 106558

[Ref.: #72557]

SI-ID 399136

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Conexibacter arvalis sp. nov., isolated from a cultivated field soil sample.	Seki T, Matsumoto A, Shimada R, Inahashi Y, Omura S, Takahashi Y	Int J Syst Evol Microbiol	10.1099/ijs.0.036095-0	2011	*
Phylogeny	Capillimicrobium parvum gen. nov., sp. nov., a novel representative of Capillimicrobiaceae fam. nov. within the order Solirubrobacterales, isolated from a grassland soil.	Vieira S, Huber KJ, Geppert A, Wolf J, Neumann-Schaal M, Luckner M, Wanner G, Musken M, Overmann J	Int J Syst Evol Microbiol	10.1099/ijsem.0.005508	2022	*

References

#16776

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23288

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30438

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26774 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72557

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399136.1 )

#26774

IJSEM 2400 2012 ( DOI 10.1099/ijs.0.036095-0 , PubMed 22140169 )

* These data were automatically processed and therefore are not curated

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Conexibacter arvalis DSM 23288

Conexibacter arvalis DSM 23288

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