Strain identifier
BacDive ID: 3038
Type strain: 
Species: Atopobium minutum
Strain history: <- E.P. Cato, VPI 7937
NCBI tax ID(s): 1381 (species)
version 8.1 (current version)
General
@ref: 8935
BacDive-ID: 3038
DSM-Number: 20585
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Atopobium minutum DSM 20585 is an anaerobe, mesophilic bacterium that was isolated from sump tube wound.
NCBI tax id
- NCBI tax id: 1381
- Matching level: species
strain history
- @ref: 8935
- history: <- E.P. Cato, VPI 7937
doi: 10.13145/bacdive3038.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Coriobacteriia
- order: Coriobacteriales
- family: Atopobiaceae
- genus: Atopobium
- species: Atopobium minutum
- full scientific name: Atopobium minutum (Hauduroy et al. 1937) Collins and Wallbanks 1993
synonyms
@ref synonym 20215 Lactobacillus minutus 20215 Bacteroides minutum
@ref: 8935
domain: Bacteria
phylum: Actinobacteria
class: Coriobacteriia
order: Coriobacteriales
family: Atopobiaceae
genus: Atopobium
species: Atopobium minutum
full scientific name: Atopobium minutum (Hauduroy et al. 1937) Collins and Wallbanks 1993 emend. Nouioui et al. 2018
type strain: no
Culture and growth conditions
culture medium
- @ref: 8935
- name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104
- composition: Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
culture temp
- @ref: 8935
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 8935
- oxygen tolerance: anaerobe
murein
- @ref: 8935
- murein short key: A21.09
- type: A4ß L-Orn-L-Ser-D-Glu
Isolation, sampling and environmental information
isolation
- @ref: 8935
- sample type: sump tube wound
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Medical device | #Catheter |
| #Host Body-Site | #Other | #Wound |
taxonmaps
- @ref: 69479
- File name: preview.99_3929.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_150;96_1430;97_1706;98_2081;99_3929&stattab=map
- Last taxonomy: Atopobium minutum
- 16S sequence: MF375481
- Sequence Identity:
- Total samples: 5662
- soil counts: 136
- aquatic counts: 84
- animal counts: 5429
- plant counts: 13
Safety information
risk assessment
- @ref: 8935
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 8935
- description: Atopobium minutum strain DSM 20585 16S ribosomal RNA gene, partial sequence
- accession: MF375481
- length: 1338
- database: ena
- NCBI tax ID: 1381
External links
@ref: 8935
culture collection no.: DSM 20585, VPI 7937
straininfo link
- @ref: 72558
- straininfo: 49651
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 8935 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20585) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20585 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 72558 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49651.1 | StrainInfo: A central database for resolving microbial strain identifiers |