Name: Thalassomonas viridans XOM25
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2881

Type strain:

Species: Thalassomonas viridans

Strain Designation: XOM25

Culture col. no.: DSM 13754, CECT 5083

Strain history: <- CECT <- M. J. Pujalte; XOM25 (Alteromonas sp.)

NCBI tax ID(s): 137584 (species)

SI-ID 87833

CECT 5083, DSM 13754

Other strains from Thalassomonas viridans

T. viridans XOM5, DSM 13753, CECT 5082, CIP ...

Section

Thalassomonas viridans XOM25 is a mesophilic, motile bacterium that was isolated from cultivated oyster.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Colwelliaceae*
	Genus	*Thalassomonas*
	Species	**Thalassomonas viridans**
	Full Scientific Name (LPSN)	Thalassomonas viridans Macián et al. 2001

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.965

[Ref.: #69480]	Motility	yes Confidence in %96.387

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5145]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #5145]

Culture medium growth

[Ref.: #5145]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5145]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5145]			growth	28 °C

[Ref.: #5145]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %98.806

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5145]	Sample type/isolated from	cultivated oyster
[Ref.: #5145]	Geographic location (country and/or sea, region)	Vinaroz
[Ref.: #5145]	Country	Spain
[Ref.: #5145]	Country ISO 3 Code	ESP
[Ref.: #5145]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Mollusca

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ294748 (>99% sequence identity) for Thalassomonas viridans subclade from Microbeatlas

Aquatic Samples	463
Soil Samples	2
Animal Samples	21
Plant Samples	4
Total Samples	490

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5145]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5145]	Thalassomonas viridans 16S rRNA gene, strain XOM25T, CECT 5083T	AJ294748	1533	ENA	137584 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thalassomonas viridans XOM25	GCA_000948985	complete	GenBank	137584 tax ID	*
[Ref.: #66792]	Thalassomonas viridans strain XOM25	137584.5	wgs	PATRIC	137584 tax ID	*
[Ref.: #66792]	Thalassomonas viridans XOM25	2630968601	draft	JGI IMG/M	137584 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thalassomonas viridans XOM25 NCBI: GCA_000948985.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thalassomonas viridans XOM25 NCBI: GCA_000948985.1
[Ref.: #69480]	motile	yes	88.079	no
[Ref.: #69480]	flagellated	yes	84.84	no
[Ref.: #69480]	gram-positive	no	98.814	no
[Ref.: #69480]	anaerobic	no	98.956	no
[Ref.: #69480]	aerobic	yes	84.624	no
[Ref.: #69480]	halophile	no	50	no
[Ref.: #69480]	spore-forming	no	94.433	no
[Ref.: #69480]	glucose-util	yes	89.68	no
[Ref.: #69480]	thermophile	no	99.178	yes
[Ref.: #69480]	glucose-ferment	no	68.669	no
[Ref.: #69480]	motile	yes	88.079	no
[Ref.: #69480]	flagellated	yes	84.84	no
[Ref.: #69480]	gram-positive	no	98.814	no
[Ref.: #69480]	anaerobic	no	98.956	no
[Ref.: #69480]	aerobic	yes	84.624	no
[Ref.: #69480]	halophile	no	50	no
[Ref.: #69480]	spore-forming	no	94.433	no
[Ref.: #69480]	glucose-util	yes	89.68	no
[Ref.: #69480]	thermophile	no	99.178	yes
[Ref.: #69480]	glucose-ferment	no	68.669	no

Availability in culture collections External links

[Ref.: #5145]

Culture collection no.

DSM 13754, CECT 5083

[Ref.: #72404]

SI-ID 87833

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Litorilituus sediminis gen. nov. sp. nov., isolated from coastal sediment of an amphioxus breeding zone in Qingdao, China.	Wang Y, Zhao R, Ji S, Li Z, Yu T, Li B, Shi X, Zhang XH	Antonie Van Leeuwenhoek	10.1007/s10482-013-9967-4	2013	*
Phylogeny	Thalassomonas actiniarum sp. nov. and Thalassomonas haliotis sp. nov., isolated from marine animals.	Hosoya S, Adachi K, Kasai H	Int J Syst Evol Microbiol	10.1099/ijs.0.000539-0	2009	*
Phylogeny	Thalassomonas viridans gen. nov., sp. nov., a novel marine gamma-proteobacterium.	Macian MC, Ludwig W, Schleifer KH, Garay E, Pujalte MJ	Int J Syst Evol Microbiol	10.1099/00207713-51-4-1283	2001	*
Metabolism	Unusual Class I Lanthipeptides from the Marine Bacteria Thalassomonas viridans.	Vermeulen R, Van Staden ADP, van Zyl LJ, Dicks LMT, Trindade M	ACS Synth Biol	10.1021/acssynbio.2c00480	2022	*

References

#5145

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13754

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72404

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID87833.1 )

* These data were automatically processed and therefore are not curated

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