Thalassomonas viridans (DSM 13754, CECT 5083, XOM25)

Name: Thalassomonas viridans (DSM 13754, CECT 5083, XOM25)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2881

Type strain

Strain Designation XOM25

Culture col. no. DSM 13754 CECT 5083 XOM25

NCBI tax ID(s) 137584

Special Collections DSMZ

Links

Thalassomonas viridans XOM25 is a mesophilic prokaryote that was isolated from cultivated oyster.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 87833

CECT 5083,DSM 13754

@ref 20215

Last LPSN update 2025-12-16 09:47:25

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Colwelliaceae

Genus Thalassomonas

Species Thalassomonas viridans

Full scientific name Thalassomonas viridans Macián et al. 2001

BacDive ID	Other strains from **Thalassomonas viridans** (1)	Type strain
2880	T. viridans XOM5, DSM 13753, CECT 5082, CIP 107165

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	100
125439	negative	99

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5145	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5145	positive	growth	28	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		95.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Mollusca

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5145	cultivated oyster	Vinaroz	Spain	ESP	Europe

Taxonmaps

69479

Global distribution of 16S sequence AJ294748 (>99% sequence identity) for Thalassomonas viridans subclade from Microbeatlas

Aquatic Samples	463
Soil Samples	2
Animal Samples	21
Plant Samples	4
Total Samples	490

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5145	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM94898v2 assembly for Thalassomonas viridans XOM25	complete	GCA_000948985	137584.5	2630968601	137584	88.57

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5145	Thalassomonas viridans 16S rRNA gene, strain XOM25T, CECT 5083T	AJ294748	1533		137584

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Thalassomonas viridans XOM25
NCBI: GCA_000948985

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.60	no
125439	motility	BacteriaNetⓘ	yes	71.40	no
125439	gram_stain	BacteriaNetⓘ	negative	99.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	64.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Thalassomonas viridans XOM25
NCBI: GCA_000948985.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	92.75	no
125438	aerobic	aerobicⓘ	yes	68.98	no
125438	spore-forming	spore-formingⓘ	no	85.20	no
125438	thermophilic	thermophileⓘ	no	95.79	yes
125438	flagellated	motile2+ⓘ	yes	87.78	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Unusual Class I Lanthipeptides from the Marine Bacteria Thalassomonas viridans.	Vermeulen R, Van Staden ADP, van Zyl LJ, Dicks LMT, Trindade M	ACS Synth Biol	10.1021/acssynbio.2c00480	2022
Phylogeny	Litorilituus sediminis gen. nov. sp. nov., isolated from coastal sediment of an amphioxus breeding zone in Qingdao, China.	Wang Y, Zhao R, Ji S, Li Z, Yu T, Li B, Shi X, Zhang XH	Antonie Van Leeuwenhoek	10.1007/s10482-013-9967-4	2013
Phylogeny	Thalassomonas actiniarum sp. nov. and Thalassomonas haliotis sp. nov., isolated from marine animals.	Hosoya S, Adachi K, Kasai H	Int J Syst Evol Microbiol	10.1099/ijs.0.000539-0	2009
Phylogeny	Thalassomonas viridans gen. nov., sp. nov., a novel marine gamma-proteobacterium.	Macian MC, Ludwig W, Schleifer KH, Garay E, Pujalte MJ	Int J Syst Evol Microbiol	10.1099/00207713-51-4-1283	2001

References

#5145	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13754
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Thalassomonas viridans (DSM 13754, CECT 5083, XOM25)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000948985

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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