Strain identifier
BacDive ID: 2881
Type strain:
Species: Thalassomonas viridans
Strain Designation: XOM25
Strain history: <- CECT <- M. J. Pujalte; XOM25 (Alteromonas sp.)
NCBI tax ID(s): 137584 (species)
General
@ref: 5145
BacDive-ID: 2881
DSM-Number: 13754
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Thalassomonas viridans XOM25 is a mesophilic, motile bacterium that was isolated from cultivated oyster.
NCBI tax id
- NCBI tax id: 137584
- Matching level: species
strain history
- @ref: 5145
- history: <- CECT <- M. J. Pujalte; XOM25 (Alteromonas sp.)
doi: 10.13145/bacdive2881.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Colwelliaceae
- genus: Thalassomonas
- species: Thalassomonas viridans
- full scientific name: Thalassomonas viridans Macián et al. 2001
@ref: 5145
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Colwelliaceae
genus: Thalassomonas
species: Thalassomonas viridans
full scientific name: Thalassomonas viridans Macián et al. 2001
strain designation: XOM25
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 96.387 | |
69480 | 99.965 | negative |
Culture and growth conditions
culture medium
- @ref: 5145
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 5145
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 98.806 |
Isolation, sampling and environmental information
isolation
- @ref: 5145
- sample type: cultivated oyster
- geographic location: Vinaroz
- country: Spain
- origin.country: ESP
- continent: Europe
isolation source categories
- Cat1: #Host
- Cat2: #Invertebrates (Other)
- Cat3: #Mollusca
taxonmaps
- @ref: 69479
- File name: preview.99_519.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_82;96_331;97_369;98_421;99_519&stattab=map
- Last taxonomy: Thalassomonas viridans subclade
- 16S sequence: AJ294748
- Sequence Identity:
- Total samples: 490
- soil counts: 2
- aquatic counts: 463
- animal counts: 21
- plant counts: 4
Safety information
risk assessment
- @ref: 5145
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5145
- description: Thalassomonas viridans 16S rRNA gene, strain XOM25T, CECT 5083T
- accession: AJ294748
- length: 1533
- database: ena
- NCBI tax ID: 137584
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Thalassomonas viridans XOM25 | GCA_000948985 | complete | ncbi | 137584 |
66792 | Thalassomonas viridans strain XOM25 | 137584.5 | wgs | patric | 137584 |
66792 | Thalassomonas viridans XOM25 | 2630968601 | draft | img | 137584 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 88.079 | no |
motile | yes | 88.079 | no |
flagellated | yes | 84.84 | no |
flagellated | yes | 84.84 | no |
gram-positive | no | 98.814 | no |
gram-positive | no | 98.814 | no |
anaerobic | no | 98.956 | no |
anaerobic | no | 98.956 | no |
aerobic | yes | 84.624 | no |
aerobic | yes | 84.624 | no |
halophile | no | 50 | no |
halophile | no | 50 | no |
spore-forming | no | 94.433 | no |
spore-forming | no | 94.433 | no |
glucose-util | yes | 89.68 | no |
glucose-util | yes | 89.68 | no |
thermophile | no | 99.178 | yes |
thermophile | no | 99.178 | yes |
glucose-ferment | no | 68.669 | no |
glucose-ferment | no | 68.669 | no |
External links
@ref: 5145
culture collection no.: DSM 13754, CECT 5083
straininfo link
- @ref: 72404
- straininfo: 87833
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 11491324 | Thalassomonas viridans gen. nov., sp. nov., a novel marine gamma-proteobacterium. | Macian MC, Ludwig W, Schleifer KH, Garay E, Pujalte MJ | Int J Syst Evol Microbiol | 10.1099/00207713-51-4-1283 | 2001 | Animals, Base Composition, Base Sequence, DNA, Bacterial/chemistry/genetics, Fatty Acids/analysis, Gammaproteobacteria/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Ostreidae/microbiology, Phylogeny, Pigments, Biological/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Spain | Metabolism |
Phylogeny | 19329588 | Thalassomonas actiniarum sp. nov. and Thalassomonas haliotis sp. nov., isolated from marine animals. | Hosoya S, Adachi K, Kasai H | Int J Syst Evol Microbiol | 10.1099/ijs.0.000539-0 | 2009 | Animals, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Gammaproteobacteria/chemistry/*classification/genetics/*isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid | Genetics |
Phylogeny | 23839057 | Litorilituus sediminis gen. nov. sp. nov., isolated from coastal sediment of an amphioxus breeding zone in Qingdao, China. | Wang Y, Zhao R, Ji S, Li Z, Yu T, Li B, Shi X, Zhang XH | Antonie Van Leeuwenhoek | 10.1007/s10482-013-9967-4 | 2013 | Aerobiosis, Animals, Bacterial Typing Techniques, Base Composition, Catalase/analysis, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flagella/physiology, Gammaproteobacteria/*classification/genetics/*isolation & purification/physiology, Geologic Sediments/*microbiology, Hydrogen-Ion Concentration, Lancelets/*growth & development, Molecular Sequence Data, Oxidoreductases/analysis, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature | Enzymology |
Metabolism | 36323319 | Unusual Class I Lanthipeptides from the Marine Bacteria Thalassomonas viridans. | Vermeulen R, Van Staden ADP, van Zyl LJ, Dicks LMT, Trindade M | ACS Synth Biol | 10.1021/acssynbio.2c00480 | 2022 | *Bacteriocins/pharmacology, Peptides/metabolism, Escherichia coli/genetics/metabolism, Protein Processing, Post-Translational |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
5145 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13754) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-13754 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
72404 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID87833.1 | StrainInfo: A central database for resolving microbial strain identifiers |