Strain identifier

BacDive ID: 2881

Type strain: Yes

Species: Thalassomonas viridans

Strain Designation: XOM25

Strain history: <- CECT <- M. J. Pujalte; XOM25 (Alteromonas sp.)

NCBI tax ID(s): 137584 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 5145

BacDive-ID: 2881

DSM-Number: 13754

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile

description: Thalassomonas viridans XOM25 is a mesophilic, motile bacterium that was isolated from cultivated oyster.

NCBI tax id

  • NCBI tax id: 137584
  • Matching level: species

strain history

  • @ref: 5145
  • history: <- CECT <- M. J. Pujalte; XOM25 (Alteromonas sp.)

doi: 10.13145/bacdive2881.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Colwelliaceae
  • genus: Thalassomonas
  • species: Thalassomonas viridans
  • full scientific name: Thalassomonas viridans Macián et al. 2001

@ref: 5145

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Colwelliaceae

genus: Thalassomonas

species: Thalassomonas viridans

full scientific name: Thalassomonas viridans Macián et al. 2001

strain designation: XOM25

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes96.387
6948099.965negative

Culture and growth conditions

culture medium

  • @ref: 5145
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 5145
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no98.806

Isolation, sampling and environmental information

isolation

  • @ref: 5145
  • sample type: cultivated oyster
  • geographic location: Vinaroz
  • country: Spain
  • origin.country: ESP
  • continent: Europe

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Mollusca

taxonmaps

  • @ref: 69479
  • File name: preview.99_519.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_82;96_331;97_369;98_421;99_519&stattab=map
  • Last taxonomy: Thalassomonas viridans subclade
  • 16S sequence: AJ294748
  • Sequence Identity:
  • Total samples: 490
  • soil counts: 2
  • aquatic counts: 463
  • animal counts: 21
  • plant counts: 4

Safety information

risk assessment

  • @ref: 5145
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 5145
  • description: Thalassomonas viridans 16S rRNA gene, strain XOM25T, CECT 5083T
  • accession: AJ294748
  • length: 1533
  • database: ena
  • NCBI tax ID: 137584

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Thalassomonas viridans XOM25GCA_000948985completencbi137584
66792Thalassomonas viridans strain XOM25137584.5wgspatric137584
66792Thalassomonas viridans XOM252630968601draftimg137584

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes88.079no
motileyes88.079no
flagellatedyes84.84no
flagellatedyes84.84no
gram-positiveno98.814no
gram-positiveno98.814no
anaerobicno98.956no
anaerobicno98.956no
aerobicyes84.624no
aerobicyes84.624no
halophileno50no
halophileno50no
spore-formingno94.433no
spore-formingno94.433no
glucose-utilyes89.68no
glucose-utilyes89.68no
thermophileno99.178yes
thermophileno99.178yes
glucose-fermentno68.669no
glucose-fermentno68.669no

External links

@ref: 5145

culture collection no.: DSM 13754, CECT 5083

straininfo link

  • @ref: 72404
  • straininfo: 87833

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11491324Thalassomonas viridans gen. nov., sp. nov., a novel marine gamma-proteobacterium.Macian MC, Ludwig W, Schleifer KH, Garay E, Pujalte MJInt J Syst Evol Microbiol10.1099/00207713-51-4-12832001Animals, Base Composition, Base Sequence, DNA, Bacterial/chemistry/genetics, Fatty Acids/analysis, Gammaproteobacteria/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Ostreidae/microbiology, Phylogeny, Pigments, Biological/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, SpainMetabolism
Phylogeny19329588Thalassomonas actiniarum sp. nov. and Thalassomonas haliotis sp. nov., isolated from marine animals.Hosoya S, Adachi K, Kasai HInt J Syst Evol Microbiol10.1099/ijs.0.000539-02009Animals, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Gammaproteobacteria/chemistry/*classification/genetics/*isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic AcidGenetics
Phylogeny23839057Litorilituus sediminis gen. nov. sp. nov., isolated from coastal sediment of an amphioxus breeding zone in Qingdao, China.Wang Y, Zhao R, Ji S, Li Z, Yu T, Li B, Shi X, Zhang XHAntonie Van Leeuwenhoek10.1007/s10482-013-9967-42013Aerobiosis, Animals, Bacterial Typing Techniques, Base Composition, Catalase/analysis, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flagella/physiology, Gammaproteobacteria/*classification/genetics/*isolation & purification/physiology, Geologic Sediments/*microbiology, Hydrogen-Ion Concentration, Lancelets/*growth & development, Molecular Sequence Data, Oxidoreductases/analysis, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, TemperatureEnzymology
Metabolism36323319Unusual Class I Lanthipeptides from the Marine Bacteria Thalassomonas viridans.Vermeulen R, Van Staden ADP, van Zyl LJ, Dicks LMT, Trindade MACS Synth Biol10.1021/acssynbio.2c004802022*Bacteriocins/pharmacology, Peptides/metabolism, Escherichia coli/genetics/metabolism, Protein Processing, Post-Translational

Reference

@idauthorscataloguedoi/urltitle
5145Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13754)https://www.dsmz.de/collection/catalogue/details/culture/DSM-13754
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
72404Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID87833.1StrainInfo: A central database for resolving microbial strain identifiers