Name: Thalassomonas viridans XOM5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2880

Type strain:

Species: Thalassomonas viridans

Strain Designation: XOM5

Culture col. no.: DSM 13753, CECT 5082, CIP 107165

Strain history: CIP <- 2001 CECT <- 1999, M.J. Pujalte, strain: XOM5

NCBI tax ID(s): 137584 (species)

SI-ID 389503

CECT 5082, DSM 13753, CIP 107165

Other strains from Thalassomonas viridans

T. viridans XOM25, DSM 13754, CECT 5083 (type strain)

Section

Thalassomonas viridans XOM5 is a mesophilic, Gram-negative, motile bacterium that was isolated from cultivated oyster.

Gram-negative
motile
rod-shaped
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Colwelliaceae*
	Genus	*Thalassomonas*
	Species	**Thalassomonas viridans**
	Full Scientific Name (LPSN)	Thalassomonas viridans Macián et al. 2001

Information on morphological and physiological properties Morphology

[Ref.: #123860]	Gram stain	negative

[Ref.: #123860]	Cell shape	rod-shaped

[Ref.: #123860]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5144]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #5144]

Culture medium growth

[Ref.: #5144]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5144]

Culture medium composition

expand / minimize

[Ref.: #36409]

Culture medium

Marine agar (MA)

[Ref.: #36409]

Culture medium growth

[Ref.: #36409]

Culture medium composition

expand / minimize

[Ref.: #123860]

Culture medium

CIP Medium 13

[Ref.: #123860]

Culture medium growth

[Ref.: #123860]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5144]		growth	28 °C
[Ref.: #36409]		growth	20 °C
[Ref.: #123860]		growth	15-30 °C
[Ref.: #123860]	no	growth	5 °C
[Ref.: #123860]	no	growth	10 °C
[Ref.: #123860]	no	growth	37 °C

[Ref.: #5144]	Temperature range	mesophilic
[Ref.: #36409]	Temperature range	psychrophilic
[Ref.: #123860]	Temperature range	psychrophilic
[Ref.: #123860]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #123860]		esculin ChEBI	-	hydrolysis
[Ref.: #123860]		sodium thiosulfate ChEBI	-	builds gas from

	Metabolite production	Metabolite	Production
[Ref.: #123860]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123860]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123860]	amylase	+
[Ref.: #123860]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123860]	caseinase	+	3.4.21.50
[Ref.: #123860]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #123860]	gelatinase	+/-
[Ref.: #123860]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #123860]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123860]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123860]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123860]	oxidase	+
[Ref.: #123860]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #123860]	tryptophan deaminase	-
[Ref.: #123860]	tween esterase	+
[Ref.: #123860]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123860]	10121	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5144]	Sample type/isolated from	cultivated oyster
[Ref.: #5144]	Geographic location (country and/or sea, region)	Vinaroz
[Ref.: #5144]	Country	Spain
[Ref.: #5144]	Country ISO 3 Code	ESP
[Ref.: #5144]	Continent	Europe

[Ref.: #123860]	Sample type/isolated from	Food, Cultivated oyster
[Ref.: #123860]	Country	Spain
[Ref.: #123860]	Country ISO 3 Code	ESP
[Ref.: #123860]	Continent	Europe
[Ref.: #123860]	Isolation date	1989
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Mollusca

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ294747 (>99% sequence identity) for Thalassomonas viridans subclade from Microbeatlas

Aquatic Samples	463
Soil Samples	2
Animal Samples	21
Plant Samples	4
Total Samples	490

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5144]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123860]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5144]	Thalassomonas viridans 16S rRNA gene, strain XOM5, CECT 5082	AJ294747	1534	ENA	137584 tax ID

Availability in culture collections External links

[Ref.: #5144]

Culture collection no.

DSM 13753, CECT 5082, CIP 107165

[Ref.: #72403]

SI-ID 389503

References

#5144

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13753

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#36409 ; Curators of the CIP;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#72403

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389503.1 )

#123860 Collection of Institut Pasteur ; Curators of the CIP; CIP 107165
* These data were automatically processed and therefore are not curated

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