Name: Thalassotalea ganghwensis JC2041
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2882

Type strain:

Species: Thalassotalea ganghwensis

Strain Designation: JC2041, JC 2041

Culture col. no.: DSM 15355, IMSNU 14005, KCTC 12041, CIP 108416

Strain history: CIP <- 2004, DSMZ <- J. Chun: strain JC 2041

NCBI tax ID(s): 221989 (species)

SI-ID 97673

KCTC 12041, DSM 15355, CIP 108416

Section

Thalassotalea ganghwensis JC2041 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sediment sample of getbol.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Colwelliaceae*
	Genus	*Thalassotalea*
	Species	**Thalassotalea ganghwensis**
	Full Scientific Name (LPSN)	Thalassotalea ganghwensis (Yi et al. 2004) Zhang et al. 2014

Synonym

Thalassomonas ganghwensis

Information on morphological and physiological properties Morphology

[Ref.: #29962]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #119530]	Gram stain	negative

[Ref.: #29962]	Cell length	1.9 µm

[Ref.: #29962]	Cell width	0.65 µm

[Ref.: #29962]	Cell shape	rod-shaped
[Ref.: #119530]	Cell shape	rod-shaped

[Ref.: #29962]	Motility	yes
[Ref.: #119530]	Motility	yes

[Ref.: #29962]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5870]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #5870]

Culture medium growth

[Ref.: #5870]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5870]

Culture medium composition

expand / minimize

[Ref.: #36404]

Culture medium

Marine agar (MA)

[Ref.: #36404]

Culture medium growth

[Ref.: #36404]

Culture medium composition

expand / minimize

[Ref.: #119530]

Culture medium

CIP Medium 13

[Ref.: #119530]

Culture medium growth

[Ref.: #119530]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5870]		growth	35 °C
[Ref.: #29962]		growth	15-40 °C
[Ref.: #29962]		optimum	35 °C
[Ref.: #36404]		growth	30 °C
[Ref.: #67771]		growth	35 °C
[Ref.: #119530]		growth	15-30 °C
[Ref.: #119530]	no	growth	5 °C
[Ref.: #119530]	no	growth	10 °C

[Ref.: #5870]	Temperature range	mesophilic
[Ref.: #29962]	Temperature range	mesophilic
[Ref.: #36404]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic
[Ref.: #119530]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #29962]			optimum	7.5
[Ref.: #29962]			growth	07-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29962]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #29962]

Ability of spore formation

	Salt		Salt conc.
[Ref.: #29962]	NaCl	growth	01-08	%
[Ref.: #29962]	NaCl	optimum	3	%
[Ref.: #119530]	NaCl	growth	0-10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29962]	acetate ChEBI	+	carbon source
[Ref.: #29962]	asparagine ChEBI	+	carbon source
[Ref.: #29962]	esculin ChEBI	+	hydrolysis
[Ref.: #119530]	esculin ChEBI	-	hydrolysis
[Ref.: #29962]	galactose ChEBI	+	carbon source
[Ref.: #29962]	gelatin ChEBI	+	carbon source
[Ref.: #29962]	glucose ChEBI	+	carbon source
[Ref.: #29962]	glycine ChEBI	+	carbon source
[Ref.: #29962]	nitrate ChEBI	+	reduction
[Ref.: #119530]	nitrate ChEBI	-	reduction
[Ref.: #119530]	nitrite ChEBI	-	reduction
[Ref.: #119530]	sodium thiosulfate ChEBI	-	builds gas from
[Ref.: #29962]	succinate ChEBI	+	carbon source
[Ref.: #29962]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #119530]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #29962]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #119530]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #29962]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #119530]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119530]	caseinase	+	3.4.21.50
[Ref.: #29962]	catalase	+	1.11.1.6
[Ref.: #119530]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #29962]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #119530]	gelatinase	+
[Ref.: #119530]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #119530]	lipase	+
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119530]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119530]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119530]	oxidase	+
[Ref.: #119530]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119530]	tryptophan deaminase	-
[Ref.: #119530]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119530]	11167	-	+	+	+	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5870]	Sample type/isolated from	sediment sample of getbol
[Ref.: #5870]	Geographic location (country and/or sea, region)	Ganghwa island of Korea

[Ref.: #67771]	Sample type/isolated from	From a sediment sample of getbol, the Korean tidal flat
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #119530]	Sample type/isolated from	Environment, Sediment sample of getbol
[Ref.: #119530]	Geographic location (country and/or sea, region)	Ganghwa Island
[Ref.: #119530]	Country	Republic of Korea
[Ref.: #119530]	Country ISO 3 Code	KOR
[Ref.: #119530]	Continent	Asia
[Ref.: #119530]	Isolation date	2002
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY194066 (>99% sequence identity) for Thalassotalea ganghwensis subclade from Microbeatlas

Aquatic Samples	634
Soil Samples	10
Animal Samples	77
Plant Samples
Total Samples	721

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5870]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119530]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5870]	Thalassomonas ganghwensis strain JC2041 16S ribosomal RNA gene, partial sequence	AY194066	1462	ENA	221989 tax ID

[Ref.: #5870]

GC-content

42 mol%

Availability in culture collections External links

[Ref.: #5870]

Culture collection no.

DSM 15355, IMSNU 14005, KCTC 12041, CIP 108416

[Ref.: #72405]

SI-ID 97673

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thalassotalea coralli sp. nov., isolated from the torch coral Euphyllia glabrescens.	Sheu DS, Sheu SY, Xie PB, Tang SL, Chen WM	Int J Syst Evol Microbiol	10.1099/ijsem.0.002478	2017	*
Phylogeny	Thalassotalea sediminis sp. nov., isolated from coastal sediment.	Xu ZX, Lu DC, Liang QY, Chen GJ, Du ZJ	Antonie Van Leeuwenhoek	10.1007/s10482-015-0639-4	2016	*
Phylogeny	Description of Thalassotalea piscium gen. nov., sp. nov., isolated from flounder (Paralichthys olivaceus), reclassification of four species of the genus Thalassomonas as members of the genus Thalassotalea gen. nov. and emended description of the genus Thalassomonas.	Zhang Y, Tang K, Shi X, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijs.0.055913-0	2014	*
Phylogeny	Thalassomonas agariperforans sp. nov., an agarolytic bacterium isolated from marine sand.	Park S, Choi WC, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.027821-0	2010	*
Phylogeny	Thalassomonas ganghwensis sp. nov., isolated from tidal flat sediment.	Yi H, Bae KS, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.02748-0	2004	*

References

#5870

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15355

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29962

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26331 (see below)

#36404 ; Curators of the CIP;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#72405

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID97673.1 )

#119530 Collection of Institut Pasteur ; Curators of the CIP; CIP 108416

#26331

IJSEM 377 2004 ( DOI 10.1099/ijs.0.02748-0 , PubMed 15023946 )

* These data were automatically processed and therefore are not curated

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