Christensenella minuta (DSM 22607, JCM 16072, YIT 12065)

Name: Christensenella minuta (DSM 22607, JCM 16072, YIT 12065)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24747

Type strain

Culture col. no. DSM 22607 JCM 16072 YIT 12065 KCTC 15498

NCBI tax ID(s) 626937

Special Collections DSMZ JCM KCTC Literature strains

History <- Y. Watanabe, Yakult Central Inst. Microbiol. Res., Kunitachi-shi, Tokyo, Japan; YIT 12065 <- F. Nagai and M. Morotomi; {2008} Y. Watanabe A8 (=YIT 12065).

Links

Christensenella minuta DSM 22607 is an anaerobe, Gram-negative, rod-shaped bacterium that was isolated from faeces from a healthy Japanese male.

Gram-negative rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403729

CIP 112227,JCM 16072,DSM 22607

@ref 20215

Last LPSN update 2026-02-09 11:24:03

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Christensenellaceae

Genus Christensenella

Species Christensenella minuta

Full scientific name Christensenella minuta Morotomi et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
29932	negative	0.8-1.9 µm	0.4 µm	rod-shaped

Pigmentation

29932

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
21228	WILKINS-CHALGREN ANAEROBE BROTH (N2/CO2) (DSMZ Medium 339a)	Medium recipe at MediaDive	Name: WILKINS-CHALGREN ANAEROBE BROTH (N2/CO2) (DSMZ Medium 339a) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l D-Glucose 5.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water
21228	RCM MEDIUM (N2/CO2) (DSMZ Medium 634c)	Medium recipe at MediaDive	Name: RCM MEDIUM (N2/CO2) (DSMZ Medium 634c) Composition: dehydrated RCM medium 38.0 g/l Sodium carbonate 1.0 g/l Sodium resazurin 0.0005 g/l Distilled water
21228	CHOPPED MEDIUM (N2/CO2) (DSMZ Medium 78b)	Medium recipe at MediaDive	Name: CHOPPED MEDIUM (N2/CO2) (DSMZ Medium 78b) Composition: Ground beef 487.805 g/l Casitone 29.2683 g/l K2HPO4 4.87805 g/l Yeast extract 4.87805 g/l L-Cysteine HCl x H2O 0.487805 g/l Ethanol 0.00926829 g/l Haemin 0.00487805 g/l Sodium resazurin 0.000487805 g/l Vitamin K3 4.87805e-05 g/l NaOH Distilled water Vitamin K1 Water

Culture temp

@ref	Growth	Type	Temperature (°C)
21228	positive	growth	37
29932	positive	growth	25-43
29932	positive	optimum	37
67770	positive	growth	37

Culture pH

@ref	Ability	Type	PH	PH range
29932	positive	optimum	7.5
29932	positive	growth	6.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
21228	anaerobe
29932	anaerobe
125439	anaerobe	99.2

Spore formation

29932

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29932	NaCl	positive	growth	<5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29932	22599 ChEBI	arabinose	+	carbon source
29932	17234 ChEBI	glucose	+	carbon source
29932	37684 ChEBI	mannose	+	carbon source
29932	26546 ChEBI	rhamnose	+	carbon source
29932	17814 ChEBI	salicin	+	carbon source
29932	18222 ChEBI	xylose	+	carbon source

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	adipate degradation	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	L-lactaldehyde degradation	100	3 of 3
66794	ribulose monophosphate pathway	100	2 of 2
66794	starch degradation	100	10 of 10
66794	palmitate biosynthesis	100	22 of 22
66794	coenzyme A metabolism	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	formaldehyde oxidation	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	pentose phosphate pathway	90.91	10 of 11
66794	chorismate metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	degradation of sugar alcohols	87.5	14 of 16
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	propanol degradation	85.71	6 of 7
66794	phenylalanine metabolism	84.62	11 of 13
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	Entner Doudoroff pathway	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	threonine metabolism	80	8 of 10
66794	photosynthesis	78.57	11 of 14
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	ketogluconate metabolism	75	6 of 8
66794	ppGpp biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	purine metabolism	73.4	69 of 94
66794	citric acid cycle	71.43	10 of 14
66794	degradation of pentoses	71.43	20 of 28
66794	glycolysis	70.59	12 of 17
66794	alanine metabolism	68.97	20 of 29
66794	methane metabolism	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	cyanate degradation	66.67	2 of 3
66794	degradation of hexoses	66.67	12 of 18
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	NAD metabolism	66.67	12 of 18
66794	methionine metabolism	65.38	17 of 26
66794	pyrimidine metabolism	64.44	29 of 45
66794	tetrahydrofolate metabolism	64.29	9 of 14
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	glycogen metabolism	60	3 of 5
66794	4-hydroxyphenylacetate degradation	60	6 of 10
66794	cellulose degradation	60	3 of 5
66794	hydrogen production	60	3 of 5
66794	propionate fermentation	60	6 of 10
66794	glycine betaine biosynthesis	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	tryptophan metabolism	57.89	22 of 38
66794	oxidative phosphorylation	57.14	52 of 91
66794	cysteine metabolism	55.56	10 of 18
66794	non-pathway related	55.26	21 of 38
66794	urea cycle	53.85	7 of 13
66794	leucine metabolism	53.85	7 of 13
66794	histidine metabolism	51.72	15 of 29
66794	arginine metabolism	50	12 of 24
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	toluene degradation	50	2 of 4
66794	kanosamine biosynthesis II	50	1 of 2
66794	sulfopterin metabolism	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	phenylmercury acetate degradation	50	1 of 2
66794	acetate fermentation	50	2 of 4
66794	selenocysteine biosynthesis	50	3 of 6
66794	lysine metabolism	50	21 of 42
66794	metabolism of disaccharids	45.45	5 of 11
66794	proline metabolism	45.45	5 of 11
66794	tyrosine metabolism	42.86	6 of 14
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	isoprenoid biosynthesis	42.31	11 of 26
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	ascorbate metabolism	40.91	9 of 22
66794	methylglyoxal degradation	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	flavin biosynthesis	40	6 of 15
66794	arachidonate biosynthesis	40	2 of 5
66794	myo-inositol biosynthesis	40	4 of 10
66794	lipid metabolism	38.71	12 of 31
66794	vitamin B1 metabolism	38.46	5 of 13
66794	d-xylose degradation	36.36	4 of 11
66794	degradation of sugar acids	36	9 of 25
66794	polyamine pathway	34.78	8 of 23
66794	lipid A biosynthesis	33.33	3 of 9
66794	IAA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	molybdenum cofactor biosynthesis	33.33	3 of 9
66794	nitrate assimilation	33.33	3 of 9
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	coenzyme M biosynthesis	30	3 of 10
66794	vitamin B12 metabolism	29.41	10 of 34
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	biotin biosynthesis	25	1 of 4
66794	phenol degradation	25	5 of 20
66794	sulfate reduction	23.08	3 of 13
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	arachidonic acid metabolism	22.22	4 of 18
66794	4-hydroxymandelate degradation	22.22	2 of 9
66794	glutathione metabolism	21.43	3 of 14

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	#Male
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
21228	faeces from a healthy Japanese male	Tokyo	Japan	JPN	Asia
67770	Human feces

Taxonmaps

69479

Global distribution of 16S sequence AB490809 (>99% sequence identity) for Christensenella from Microbeatlas

Aquatic Samples	276
Soil Samples	159
Animal Samples	17409
Plant Samples	47
Total Samples	17891

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21228	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM362875v1 assembly for Christensenella minuta DSM 22607	complete	GCA_003628755	626937.26	2836893620	626937	98
67770	ASM165270v1 assembly for Christensenella minuta DSM 22607	contig	GCA_001652705	626937.30	2728369339	626937	69.86
67770	ASM167885v1 assembly for Christensenella minuta DSM 22607	scaffold	GCA_001678855	626937.8		626937	66.75
67770	ASM157142v1 assembly for Christensenella minuta DSM 22607	scaffold	GCA_001571425	626937.29	2832262383	626937	64.78

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21228	Christensenella minuta gene for 16S rRNA, partial sequence	AB490809	1497		626937

GC content

@ref	GC-content (mol%)	Method
21228	51.3	high performance liquid chromatography (HPLC)
29932	51.3

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Christensenella minuta strain DSM 22607
PATRIC: 626937.26

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	77.20	no
125439	motility	BacteriaNetⓘ	yes	79.90	no
125439	gram_stain	BacteriaNetⓘ	variable	70.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Christensenella minuta DSM 22607
NCBI: GCA_003628755.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	77.05	no
125438	anaerobic	anaerobicⓘ	yes	88.89	yes
125438	aerobic	aerobicⓘ	no	97.31	yes
125438	spore-forming	spore-formingⓘ	no	63.81	no
125438	thermophilic	thermophileⓘ	no	87.16	no
125438	flagellated	motile2+ⓘ	no	84.70	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Christensenella minuta protects and restores intestinal barrier in a colitis mouse model by regulating inflammation.	Kropp C, Tambosco K, Chadi S, Langella P, Claus SP, Martin R.	NPJ Biofilms Microbiomes	10.1038/s41522-024-00540-6	2024
	Christensenella minuta, a new candidate next-generation probiotic: current evidence and future trajectories.	Ignatyeva O, Tolyneva D, Kovalyov A, Matkava L, Terekhov M, Kashtanova D, Zagainova A, Ivanov M, Yudin V, Makarov V, Keskinov A, Kraevoy S, Yudin S.	Front Microbiol	10.3389/fmicb.2023.1241259	2023
	A Keystone Gut Bacterium Christensenella minuta-A Potential Biotherapeutic Agent for Obesity and Associated Metabolic Diseases.	Ang WS, Law JW, Letchumanan V, Hong KW, Wong SH, Ab Mutalib NS, Chan KG, Lee LH, Tan LT.	Foods	10.3390/foods12132485	2023
	Non-lactic acid bacteria probiotics isolated from intestine or various circumstances.	Lee NK, Jang HJ, Paik HD.	Food Sci Biotechnol	10.1007/s10068-024-01608-x	2024
	Targeted Intervention Strategies for Maternal-Offspring Transmission of Christensenellaceae in Pigs via a Deep Learning Model.	Shen H, Ma X, Zhang L, Li H, Zheng J, Wu S, Zuo K, Yin Y, Wang J, Tan B.	Adv Sci (Weinh)	10.1002/advs.202503411	2025
	Identifying a Novel Bile Salt Hydrolase from the Keystone Gut Bacterium Christensenella minuta.	Dejean G, Tudela H, Bruno L, Kissi D, Rawadi G, Claus SP.	Microorganisms	10.3390/microorganisms9061252	2021
	Selection of a novel strain of Christensenella minuta as a future biotherapy for Crohn's disease.	Relizani K, Le Corf K, Kropp C, Martin-Rosique R, Kissi D, Dejean G, Bruno L, Martinez C, Rawadi G, Elustondo F, Mazier W, Claus SP.	Sci Rep	10.1038/s41598-022-10015-3	2022
	The keystone gut species Christensenella minuta boosts gut microbial biomass and voluntary physical activity in mice.	Akbuga-Schon T, Suzuki TA, Jakob D, Vu DL, Waters JL, Ley RE.	mBio	10.1128/mbio.02836-23	2024
Genetics	Exploring the trimethylamine-degrading genes in the human gut microbiome.	Chen YR, Chen LD, Zheng LJ.	AMB Express	10.1186/s13568-025-01902-9	2025
Enzymology	A New Strain of Christensenella minuta as a Potential Biotherapy for Obesity and Associated Metabolic Diseases.	Mazier W, Le Corf K, Martinez C, Tudela H, Kissi D, Kropp C, Coubard C, Soto M, Elustondo F, Rawadi G, Claus SP.	Cells	10.3390/cells10040823	2021
	Comprehensive Analysis of Allulose Production: A Review and Update.	Wang L, Cui Y, Lu Y, Zhao Z.	Foods	10.3390/foods13162572	2024
Genetics	Targeted isolation of Methanobrevibacter strains from fecal samples expands the cultivated human archaeome.	Duller S, Vrbancic S, Szydlowski L, Mahnert A, Blohs M, Predl M, Kumpitsch C, Zrim V, Hogenauer C, Kosciolek T, Schmitz RA, Eberhard A, Dragovan M, Schmidberger L, Zurabischvili T, Weinberger V, Moser AM, Kolb D, Pernitsch D, Mohammadzadeh R, Kuhnast T, Rattei T, Moissl-Eichinger C.	Nat Commun	10.1038/s41467-024-52037-7	2024
	Biocatalytic Synthesis of D-Allulose Using Novel D-Tagatose 3-Epimerase From Christensenella minuta.	Wang Y, Ravikumar Y, Zhang G, Yun J, Zhang Y, Parvez A, Qi X, Sun W.	Front Chem	10.3389/fchem.2020.622325	2020
	The human gut bacteria Christensenellaceae are widespread, heritable, and associated with health.	Waters JL, Ley RE.	BMC Biol	10.1186/s12915-019-0699-4	2019
	Evaluating the anti-inflammatory and antioxidant efficacy of complementary and alternative medicines (CAM) used for management of inflammatory bowel disease: a comprehensive review.	Shin S, Chen S, Xie K, Duhun SA, Ortiz-Cerda T.	Redox Rep	10.1080/13510002.2025.2471737	2025
	Probiotics in Intestinal Mucosal Healing: A New Therapy or an Old Friend?	Filidou E, Kolios G.	Pharmaceuticals (Basel)	10.3390/ph14111181	2021
	The Plethora of Microbes with Anti-Inflammatory Activities.	Tsvetanova F.	Int J Mol Sci	10.3390/ijms25052980	2024
	Probiotic-Based Intervention in the Treatment of Ulcerative Colitis: Conventional and New Approaches.	Stofilova J, Kvakova M, Kamlarova A, Hijova E, Bertkova I, Gulasova Z.	Biomedicines	10.3390/biomedicines10092236	2022
	Assessment of Gram- and Viability-Staining Methods for Quantifying Bacterial Community Dynamics Using Flow Cytometry.	Duquenoy A, Bellais S, Gasc C, Schwintner C, Dore J, Thomas V.	Front Microbiol	10.3389/fmicb.2020.01469	2020
Metabolism	Syntrophy via Interspecies H₂ Transfer between Christensenella and Methanobrevibacter Underlies Their Global Cooccurrence in the Human Gut.	Ruaud A, Esquivel-Elizondo S, de la Cuesta-Zuluaga J, Waters JL, Angenent LT, Youngblut ND, Ley RE.	mBio	10.1128/mbio.03235-19	2020
Phylogeny	Strain level and comprehensive microbiome analysis in inflammatory bowel disease via multi-technology meta-analysis identifies key bacterial influencers of disease.	Ravichandar JD, Rutherford E, Chow CT, Han A, Yamamoto ML, Narayan N, Kaplan GG, Beck PL, Claesson MJ, Dabbagh K, Iwai S, DeSantis TZ.	Front Microbiol	10.3389/fmicb.2022.961020	2022
	The Characterization of a Novel D-allulose 3-Epimerase from Blautia produca and Its Application in D-allulose Production.	Tang X, An Y, Iqbal MW, Cong H, Zhang G, Zhang Y, Ravikumar Y, Zabed HM, Zhao M, Zhou H, Qi X.	Foods	10.3390/foods11203225	2022
	StrainSelect: A novel microbiome reference database that disambiguates all bacterial strains, genome assemblies and extant cultures worldwide.	DeSantis TZ, Cardona C, Narayan NR, Viswanatham S, Ravichandar D, Wee B, Chow CE, Iwai S.	Heliyon	10.1016/j.heliyon.2023.e13314	2023
	Alpha-tocopheryl quinone attenuates liver fibrosis through enriching Christensenella minuta and modulating bile acids metabolism via gut-liver axis.	Chen J, Zhang L, Chen Y, Yan Y, Lu C.	Phytomedicine	10.1016/j.phymed.2025.157108	2025
	Effects of a bacillus-based biological modulator on Salmonella Heidelberg contamination and cecal microbiota in chickens.	Richter JL, Kaefer BGG, Dos Santos EAR, Tadielo LE, Schmiedt JA, Fiaga DAM, Barcellos VC, Alberton GC, Dos Santos Bersot L.	Res Vet Sci	10.1016/j.rvsc.2025.105914	2025
	Gut Microbiome Interventions: From Dysbiosis to Next-Generation Probiotics (NGPs) for Disease Management.	Gupta MK, Srivastava R.	Probiotics Antimicrob Proteins	10.1007/s12602-025-10582-7	2025
	Leonurine restrains granulosa cell ferroptosis through SLC7A11/GPX4 axis to promote the treatment of polycystic ovary syndrome.	Huang X, Geng H, Liang C, Xiong X, Du X, Zhuan Q, Liu Z, Meng L, Zhou D, Zhang L, Fu X, Qi X, Hou Y.	Free Radic Biol Med	10.1016/j.freeradbiomed.2024.11.021	2025
	Christensenella minuta mitigates behavioral and cardiometabolic hallmarks of social defeat stress.	Agusti A, Molina-Mendoza GV, Tamayo M, Rossini V, Cenit MC, Frances-Cuesta C, Tolosa-Enguis V, Gomez Del Pulgar EM, Flor-Duro A, Sanz Y.	Biomed Pharmacother	10.1016/j.biopha.2024.117377	2024
Genetics	Complete genome sequence of two Christensenella minuta strains CIP 112228 and CIP 112229, isolated from human fecal samples.	Bouchier C, Touak G, Rei D, Clermont D.	Microbiol Resour Announc	10.1128/mra.00766-24	2024
Metabolism	3-O-acylated bile acids: disrupters or harmonizers of metabolism?	Chen R, Chen X, Gao J.	Trends Mol Med	10.1016/j.molmed.2024.06.003	2025
	Low-dose irradiation of the gut improves the efficacy of PD-L1 blockade in metastatic cancer patients.	Chen J, Levy A, Tian AL, Huang X, Cai G, Fidelle M, Rauber C, Ly P, Pizzato E, Sitterle L, Piccinno G, Liu P, Durand S, Mao M, Zhao L, Iebba V, Felchle H, Mallard de La Varende AL, Fischer JC, Thomas S, Greten TF, Jones JC, Monge C, Demaria S, Formenti S, Belluomini L, Dionisi V, Massard C, Blanchard P, Robert C, Quevrin C, Lopes E, Clemenson C, Mondini M, Meziani L, Zhan Y, Zeng C, Cai Q, Morel D, Sun R, Laurent PA, Mangoni M, Di Cataldo V, Arilli C, Trommer M, Wegen S, Neppl S, Riechelmann RP, Camandaroba MP, Neto ES, Fournier PE, Segata N, Holicek P, Galluzzi L, Buque A, Alves Costa Silva C, Derosa L, Kroemer G, Chen C, Zitvogel L, Deutsch E.	Cancer Cell	10.1016/j.ccell.2025.02.010	2025
	Gut commensal Christensenella minuta modulates host metabolism via acylated secondary bile acids.	Liu C, Du MX, Xie LS, Wang WZ, Chen BS, Yun CY, Sun XW, Luo X, Jiang Y, Wang K, Jiang MZ, Qiao SS, Sun M, Cui BJ, Huang HJ, Qu SP, Li CK, Wu D, Wang LS, Jiang C, Liu HW, Liu SJ.	Nat Microbiol	10.1038/s41564-023-01570-0	2024
	Unveiling roles of beneficial gut bacteria and optimal diets for health.	Kumar S, Mukherjee R, Gaur P, Leal E, Lyu X, Ahmad S, Puri P, Chang CM, Raj VS, Pandey RP.	Front Microbiol	10.3389/fmicb.2025.1527755	2025
	Development of live biotherapeutic products: a position statement of Asia-Pacific Microbiota Consortium.	Tseng CH, Wong S, Yu J, Lee YY, Terauchi J, Lai HC, Luo JC, Kao CY, Yu SL, Liou JM, Wu DC, Hou MC, Wu MS, Wu JJ, Sung JJY, El-Omar EM, Wu CY.	Gut	10.1136/gutjnl-2024-334501	2025
	Hydrogen Sulfide and Methane on Breath Test Correlate with Human Small Intestinal Hydrogen Sulfide Producers and Methanogens.	Villanueva-Millan MJ, Leite G, Mathur R, Rezaie A, Fajardo CM, de Freitas Germano J, Morales W, Sanchez M, Rivera I, Parodi G, Weitsman S, Rashid M, Hosseini A, Brimberry D, Barlow GM, Pimentel M.	Dig Dis Sci	10.1007/s10620-025-09156-y	2025
	Christensenella minuta Alleviates Acetaminophen-Induced Hepatotoxicity by Regulating Phenylalanine Metabolism.	Yao T, Fu L, Wu Y, Li L.	Nutrients	10.3390/nu16142314	2024
	The Role of Gut Microbiota Modification in Nonalcoholic Fatty Liver Disease Treatment Strategies.	Yaghmaei H, Bahanesteh A, Soltanipur M, Takaloo S, Rezaei M, Siadat SD.	Int J Hepatol	10.1155/2024/4183880	2024
	Faecal pharmacokinetics, microbiome, and bile acid changes in healthy subjects given intravenous followed by oral omadacycline; a Phase 1 clinical trial.	Jo J, Carlson TJ, Hu C, Williamson JC, Belin YT, Horvath TD, Haidacher SJ, Basseres E, Begum K, Alam MJ, Garey KW.	J Antimicrob Chemother	10.1093/jac/dkaf278	2025
	Effects of Levilactobacillus brevis GKEX supplementation on exercise performance and fatigue resistance in mice.	Lin TC, Chen CC, Tsai YS, Lin SW, Huang CC, Hsu YJ.	Front Nutr	10.3389/fnut.2025.1625645	2025
	Christensenella minuta interacts with multiple gut bacteria.	Xu C, Jiang H, Feng LJ, Jiang MZ, Wang YL, Liu SJ.	Front Microbiol	10.3389/fmicb.2024.1301073	2024
	Bacteremia caused by Desulfovibrio desulfuricans with the intestinal tract as the portal of entry: two case reports and a literature review.	Yamaizumi K, Kyotani M, Kenzaka T.	BMC Infect Dis	10.1186/s12879-024-09623-3	2024
Metabolism	Novel Approaches in Glucose and Lipid Metabolism Disorder Therapy: Targeting the Gut Microbiota-Bile Acid Axis.	Jiang J, Zhang H, Hussain M, Abdullah, Feng F, Guan R, Zhong H.	Biology (Basel)	10.3390/biology14070802	2025
	Spatial heterogeneity determines the gastrointestinal microbiome signatures in Pekin ducks.	Zhao H, Hu Z, Ru J, Wang Z, Wei J, Zhou W, Hou S, Zhang Y, Wang X.	Poult Sci	10.1016/j.psj.2025.105994	2025
	Oxidative degradation of alpha-tocopherol by reactive oxygen species, identifying products, and product anticancer activity.	Ali HM, Attia MH, Mamdouh W, Rashed EN, Ali IH.	BMC Chem	10.1186/s13065-025-01665-1	2025
Pathogenicity	Gut Microbiome dysbiosis and immune activation correlate with somatic and neuropsychiatric symptoms in COVID-19 patients.	Scalzo PL, Marshall AG, Soriano S, Curry K, Dulay M, Hodics T, Quigley EMM, Treangen TJ, Piskorz MM, Villapol S.	J Transl Med	10.1186/s12967-025-06348-y	2025
	Does gut microbiota dysbiosis impact the metabolic alterations of hydrogen sulfide and lanthionine in patients with chronic kidney disease?	Garcia-Martinez Y, Alexandrova E, Iebba V, Ferravante C, Spinelli M, Franci G, Amoresano A, Weisz A, Trepiccione F, Borriello M, Ingrosso D, Perna AF.	BMC Microbiol	10.1186/s12866-024-03590-0	2024
Metabolism	High rejection rate of polysaccharides by microfiltration benefits Christensenella minuta and acetic acid production in an anaerobic membrane bioreactor for sludge fermentation.	Gao X, Zhang Q, Zhu H.	Bioresour Technol	10.1016/j.biortech.2019.03.015	2019
	The Role of Next-Generation Probiotics in Obesity and Obesity-Associated Disorders: Current Knowledge and Future Perspectives.	Vallianou NG, Kounatidis D, Tsilingiris D, Panagopoulos F, Christodoulatos GS, Evangelopoulos A, Karampela I, Dalamaga M.	Int J Mol Sci	10.3390/ijms24076755	2023
	Integrated multi-omics landscape of non-small cell lung cancer with distant metastasis.	He T, Jiang T, Sun X, Yang F, Zhang D, Yao S, Liao J, Wu X.	Front Immunol	10.3389/fimmu.2025.1560724	2025
Pathogenicity	Gut health predictive indices linking gut microbiota dysbiosis with healthy state, mild gut discomfort, and inflammatory bowel disease phenotypes using gut microbiome profiling.	Phan J, Jain S, Nijkamp JF, Sasidharan R, Agarwal A, Bird JK, Spooren A, Wittwer Schegg J, Ver Loren van Themaat E, Mak TN.	Microbiol Spectr	10.1128/spectrum.00271-25	2025
Pathogenicity	Effects of Christensenella minuta lipopolysaccharide on RAW 264.7 macrophages activation.	Yang Y, Gu H, Sun Q, Wang J.	Microb Pathog	10.1016/j.micpath.2018.10.005	2018
	Targeted Gut Microbiota Modulation Enhances Levodopa Bioavailability and Motor Recovery in MPTP Parkinson's Disease Models.	Ai P, Xu S, Yuan Y, Xu Z, He X, Mo C, Zhang Y, Yang X, Xiao Q.	Int J Mol Sci	10.3390/ijms26115282	2025
	Association between seizure reduction during ketogenic diet treatment of epilepsy and changes in circulatory metabolites and gut microbiota composition.	Dahlin M, Wheelock CE, Prast-Nielsen S.	EBioMedicine	10.1016/j.ebiom.2024.105400	2024
Enzymology	First report of human infection by Christensenella minuta, a gram-negative, strickly anaerobic rod that inhabits the human intestine.	Alonso BL, Irigoyen von Sierakowski A, Saez Nieto JA, Rosel AB.	Anaerobe	10.1016/j.anaerobe.2017.03.007	2017
	Bile Acids and Type 2 Diabetes: Roles in Glucose Homeostasis and Therapeutic Opportunities.	Lin Y, Hu C, Wang S, Lin H.	Metabolites	10.3390/metabo15060401	2025
	Microbiome and metabolome explain the high-fat diet-induced diabetes development and diabetes resistance in Guizhou mini-pigs.	Wu Y, Mo J, Wang Q, Li J, Wei J, Zhang N, Dong Y, Zhu X, Lu T, Huang S.	Front Microbiol	10.3389/fmicb.2025.1555069	2025
	Christensenella strain resources, genomic/metabolomic profiling, and association with host at species level.	Sun XW, Huang HJ, Wang XM, Wei RQ, Niu HY, Chen HY, Luo M, Abdugheni R, Wang YL, Liu FL, Jiang H, Liu C, Liu SJ.	Gut Microbes	10.1080/19490976.2024.2347725	2024
	Probiotic-induced enrichment of Adlercreutzia equolifaciens increases gut microbiome wellness index and maps to lower host blood glucose levels.	Zhang Z, Yang Z, Lin S, Jiang S, Zhou X, Li J, Lu W, Zhang J.	Gut Microbes	10.1080/19490976.2025.2520407	2025
	Gut Bacteria in Alcohol-Associated Liver Disease.	Yang Y, Schnabl B.	Clin Liver Dis	10.1016/j.cld.2024.06.008	2024
	Associations between the rumen microbiota and carcass merit and meat quality in beef cattle.	Holman DB, Gzyl KE, Scott H, Cara Service, Prieto N, Lopez-Campos O.	Appl Microbiol Biotechnol	10.1007/s00253-024-13126-1	2024
	Multiomics Revealed the Multi-Dimensional Effects of Late Sleep on Gut Microbiota and Metabolites in Children in Northwest China.	Xiang X, Chen J, Zhu M, Gao H, Liu X, Wang Q, Wang Q.	Nutrients	10.3390/nu15204315	2023
	Research status and development trends of probiotics in clinical applications.	Li Y, Yao Y, Zhang Z, Gan Y.	Front Nutr	10.3389/fnut.2025.1650883	2025
	Christensenella timonensis, a new bacterial species isolated from the human gut.	Ndongo S, Dubourg G, Khelaifia S, Fournier PE, Raoult D.	New Microbes New Infect	10.1016/j.nmni.2016.05.010	2016
	Different intestinal ecological niches drive the divergent evolution of probiotics in the gut.	Han Z, Huang D, Liu X, Ma W, Cui W, Jiang S, Zhen D, Zhang J.	ISME Commun	10.1093/ismeco/ycaf023	2025
Phylogeny	Metagenomic Insights into the Anti-Obesity Effect of a Polysaccharide from Saccharina japonica.	Song Y, Lu D, Wang H, Zhou Z, Luo X, Ma M, Ke S, Wang H, Yu Y, Wei B.	Foods	10.3390/foods12030665	2023
Transcriptome	Gut microbiota predict retinopathy in patients with diabetes: A longitudinal cohort study.	Qin X, Sun J, Chen S, Xu Y, Lu L, Lu M, Li J, Ma Y, Lou F, Zou H.	Appl Microbiol Biotechnol	10.1007/s00253-024-13316-x	2024
Phylogeny	In Search of Healthy Ageing: A Microbiome-Based Precision Nutrition Approach for Type 2 Diabetes Prevention.	Gonzalez A, Fullaondo A, Odriozola A.	Nutrients	10.3390/nu17111877	2025
Phylogeny	Analysis of Gut Microbiota in Patients with Parkinson's Disease.	Petrov VA, Saltykova IV, Zhukova IA, Alifirova VM, Zhukova NG, Dorofeeva YB, Tyakht AV, Kovarsky BA, Alekseev DG, Kostryukova ES, Mironova YS, Izhboldina OP, Nikitina MA, Perevozchikova TV, Fait EA, Babenko VV, Vakhitova MT, Govorun VM, Sazonov AE.	Bull Exp Biol Med	10.1007/s10517-017-3700-7	2017
	Comparative Analysis of Fecal Microbiota Composition Between Rheumatoid Arthritis and Osteoarthritis Patients.	Lee JY, Mannaa M, Kim Y, Kim J, Kim GT, Seo YS.	Genes (Basel)	10.3390/genes10100748	2019
	Effects of High-Concentrate-Induced SARA on Antioxidant Capacity, Immune Levels and Rumen Microbiota and Function in Goats.	Fan S, Zheng M, Ren A, Mao H, Long D, Yang L.	Animals (Basel)	10.3390/ani14020263	2024
	Single, but not mixed dietary fibers suppress body weight gain and adiposity in high fat-fed mice.	Shallangwa SM, Ross AW, Morgan PJ.	Front Microbiol	10.3389/fmicb.2025.1544433	2025
	Preclinical Assessment of Living Therapeutic Materials: State-of-Art and Challenges.	Desai K, Mekontso J, Deshpande K, Trujillo S.	ACS Biomater Sci Eng	10.1021/acsbiomaterials.5c00247	2025
Pathogenicity	Effect of chronic low-dose treatment with chitooligosaccharides on microbial dysbiosis and inflammation associated chronic ulcerative colitis in Balb/c mice.	Rajesh KM, Kinra M, Ranadive N, Pawaskar GM, Mudgal J, Raval R.	Naunyn Schmiedebergs Arch Pharmacol	10.1007/s00210-023-02710-3	2024
	Effects of Coenzyme Q10 on the Biomarkers (Hydrogen, Methane, SCFA and TMA) and Composition of the Gut Microbiome in Rats.	Ivanova AY, Shirokov IV, Toshchakov SV, Kozlova AD, Obolenskaya ON, Mariasina SS, Ivlev VA, Gartseev IB, Medvedev OS.	Pharmaceuticals (Basel)	10.3390/ph16050686	2023
	Effects of Glucosinolate-Enriched Red Radish (Raphanus sativus) on In Vitro Models of Intestinal Microbiota and Metabolic Syndrome-Related Functionalities.	Roses C, Garcia-Ibanez P, Agudelo A, Viadel B, Tomas-Cobos L, Gallego E, Carvajal M, Milagro FI, Barcelo A.	ACS Omega	10.1021/acsomega.2c08128	2023
	Characteristics of Gut Microbiota and Fecal Metabolites in Patients with Colorectal Cancer-Associated Iron Deficiency Anemia.	Zhang Q, Wu W, Guo F, Li J, Jin Y, Cai G, Yang Y.	Microorganisms	10.3390/microorganisms12071319	2024
	Effects of prebiotics from diverse sources on dysbiotic gut microbiota associated to western diet: Insights from the human Mucosal ARtificial COLon (M-ARCOL).	Uriot O, Defois-Fraysse C, Couturier I, Deschamps C, Durif C, Chaudemanche C, Dreux-Zigha A, Blanquet-Diot S.	Curr Res Food Sci	10.1016/j.crfs.2024.100968	2025
	Insect live larvae as a new nutritional model in duck: effects on gut health.	Colombino E, Gariglio M, Biasato I, Ferrocino I, Pozzo S, Fragola E, Battisti E, Zanet S, Ferroglio E, Capucchio MT, Schiavone A.	Anim Microbiome	10.1186/s42523-024-00316-5	2024
	Gut microbiota dysbiosis in inflammatory bowel disease: interaction with intestinal barriers and microbiota-targeted treatment options.	Xie H, Yu S, Tang M, Xun Y, Shen Q, Wu G.	Front Cell Infect Microbiol	10.3389/fcimb.2025.1608025	2025
	Characterization and Safety Evaluation of Autoclaved Gut Commensal Parabacteroides goldsteinii RV-01.	Lin TL, Chen WJ, Hung CM, Wong YL, Lu CC, Lai HC.	Int J Mol Sci	10.3390/ijms252312660	2024
	Characteristics of putative keystones in the healthy adult human gut microbiota as determined by correlation network analysis.	Bauchinger F, Seki D, Berry D.	Front Microbiol	10.3389/fmicb.2024.1454634	2024
	In vitro Inoculation of Fresh or Frozen Rumen Fluid Distinguishes Contrasting Microbial Communities and Fermentation Induced by Increasing Forage to Concentrate Ratio.	Ma ZY, Zhou JW, Yi SY, Wang M, Tan ZL.	Front Nutr	10.3389/fnut.2021.772645	2021
	Vitamin C Supplementation in Healthy Individuals Leads to Shifts of Bacterial Populations in the Gut-A Pilot Study.	Otten AT, Bourgonje AR, Peters V, Alizadeh BZ, Dijkstra G, Harmsen HJM.	Antioxidants (Basel)	10.3390/antiox10081278	2021
	Gut Microbiota and Metabolic Alterations Associated with Heart Failure and Coronary Artery Disease.	Yafarova AA, Dementeva EV, Zlobovskaya OA, Sheptulina AF, Lopatukhina EV, Timofeev YS, Glazunova EV, Lyundup AV, Doludin YV, Kiselev AR, Shipulin GA, Makarov VV, Drapkina OM, Yudin SM.	Int J Mol Sci	10.3390/ijms252011295	2024
	Clostridioides difficile and neurological disorders: New perspectives.	Biazzo M, Allegra M, Deidda G.	Front Neurosci	10.3389/fnins.2022.946601	2022
	Effects of ethnicity and geography on the fecal microbiota and dietary habits of Tibeto-Burman hill tribes in Northern Thailand.	Seetaraso T, Gruneck L, Jinatham V, Kantakat S, Albert ML, Therdtatha P, Inta A, Srikummool M, Kampuansai J, Popluechai S.	PLoS One	10.1371/journal.pone.0332108	2025
	Exploring Next Generation Probiotics for Metabolic and Microbiota Dysbiosis Linked to Xenobiotic Exposure: Holistic Approach.	Torres-Sanchez A, Ruiz-Rodriguez A, Ortiz P, Moreno MA, Ampatzoglou A, Gruszecka-Kosowska A, Monteoliva-Sanchez M, Aguilera M.	Int J Mol Sci	10.3390/ijms232112917	2022
	Human Fecal Microbiota Transplantation Reduces the Susceptibility to Dextran Sulfate Sodium-Induced Germ-Free Mouse Colitis.	Yang Y, Zheng X, Wang Y, Tan X, Zou H, Feng S, Zhang H, Zhang Z, He J, Cui B, Zhang X, Wu Z, Dong M, Cheng W, Tao S, Wei H.	Front Immunol	10.3389/fimmu.2022.836542	2022
Genetics	The gut microbiome as a potential source of non-invasive biomarkers of chronic obstructive pulmonary disease.	Li N, Yi X, Chen C, Dai Z, Deng Z, Pu J, Zhou Y, Li B, Wang Z, Ran P.	Front Microbiol	10.3389/fmicb.2023.1173614	2023
	Microbiota-produced immune regulatory bile acid metabolites control central nervous system autoimmunity.	Antonini Cencicchio M, Montini F, Palmieri V, Massimino L, Lo Conte M, Finardi A, Mandelli A, Asnicar F, Pavlovic R, Drago D, Ungaro F, Andolfo A, Segata N, Martinelli V, Furlan R, Falcone M.	Cell Rep Med	10.1016/j.xcrm.2025.102028	2025
	Characterization of the gut microbiota and fecal and blood metabolomes under various factors in urban children from Northwest China.	Yang Y, Chen J, Gao H, Cui M, Zhu M, Xiang X, Wang Q.	Front Cell Infect Microbiol	10.3389/fcimb.2024.1374544	2024
Genetics	Uncovering new Firmicutes species in vertebrate hosts through metagenome-assembled genomes with potential for sporulation.	Machado DT, Dias BdC, Cayo R, Gales AC, Marques de Carvalho F, Vasconcelos ATR.	Microbiol Spectr	10.1128/spectrum.02113-24	2024
	Microbiome features associated with performance measures in athletic and non-athletic individuals: A case-control study.	Huminska-Lisowska K, Zielinska K, Mieszkowski J, Michalowska-Sawczyn M, Cieszczyk P, Labaj PP, Wasag B, Fraczek B, Grzywacz A, Kochanowicz A, Kosciolek T.	PLoS One	10.1371/journal.pone.0297858	2024
	Effects of Black Soldier Fly Larvae (Hermetia illucens Larvae) Meal on the Production Performance and Cecal Microbiota of Hens.	Yan Y, Zhang J, Chen X, Wang Z.	Vet Sci	10.3390/vetsci10050364	2023
Pathogenicity	Microbial-Based Bioactive Compounds to Alleviate Inflammation in Obesity.	Apalowo OE, Adegoye GA, Obuotor TM.	Curr Issues Mol Biol	10.3390/cimb46030119	2024
	Inclusion of up to 20% Black Soldier Fly larvae meal in broiler chicken diet has a minor effect on caecal microbiota.	de Souza Vilela J, Kheravii SK, Sharma Bajagai Y, Kolakshyapati M, Zimazile Sibanda T, Wu SB, Andrew NR, Ruhnke I.	PeerJ	10.7717/peerj.15857	2023
	Next-generation probiotics - do they open new therapeutic strategies for cancer patients?	Kazmierczak-Siedlecka K, Skonieczna-Zydecka K, Hupp T, Duchnowska R, Marek-Trzonkowska N, Polom K.	Gut Microbes	10.1080/19490976.2022.2035659	2022
	Resident gut microbiota community determines the efficacy of soluble fiber in reducing adiposity.	Shallangwa SM, Ross AW, Walker AW, Morgan PJ.	Front Microbiol	10.3389/fmicb.2024.1392016	2024
	Dysbiotic Gut Bacteria in Obesity: An Overview of the Metabolic Mechanisms and Therapeutic Perspectives of Next-Generation Probiotics.	Breton J, Galmiche M, Dechelotte P.	Microorganisms	10.3390/microorganisms10020452	2022
	Microbiome Shift, Diversity, and Overabundance of Opportunistic Pathogens in Bovine Digital Dermatitis Revealed by 16S rRNA Amplicon Sequencing.	Espiritu HM, Mamuad LL, Kim SH, Jin SJ, Lee SS, Kwon SW, Cho YI.	Animals (Basel)	10.3390/ani10101798	2020
	Proteomic and metabolomic profiling of extracellular vesicles produced by human gut archaea	Weinberger V, Darnhofer B, Thapa H, Mertelj P, Stentz R, Jones E, Grabmann G, Mohammadzadeh R, Shinde T, Karner C, Ober J, Juodeikis R, Pernitsch D, Hingerl K, Zurabishvili T, Kumpitsch C, Kuehnast T, Rinner B, Strohmaier H, Kolb D, Gotts K, Weichhart T, Kocher T, Kofeler H, Carding S, Schild S, Moissl-Eichinger C.	Nat Commun		2025
	Microbes as medicine.	Daisley BA, Allen-Vercoe E.	Ann N Y Acad Sci	10.1111/nyas.15237	2024
	Proof of Concept of Culturomics Use of Time of Care.	Naud S, Khelaifia S, Mbogning Fonkou MD, Dione N, Lagier JC, Raoult D.	Front Cell Infect Microbiol	10.3389/fcimb.2020.524769	2020
Genetics	Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools.	Derakhshani H, Bernier SP, Marko VA, Surette MG.	BMC Genomics	10.1186/s12864-020-06910-6	2020
	Beneficial Bacteria Isolated from Food in Relation to the Next Generation of Probiotics.	Sionek B, Szydlowska A, Zielinska D, Neffe-Skocinska K, Kolozyn-Krajewska D.	Microorganisms	10.3390/microorganisms11071714	2023
	Possible role of the gut microbiota in the pathogenesis of anorexia nervosa.	Sudo N.	Biopsychosoc Med	10.1186/s13030-021-00228-9	2021
Pathogenicity	Impact of dietary resistant starch type 4 on human gut microbiota and immunometabolic functions.	Upadhyaya B, McCormack L, Fardin-Kia AR, Juenemann R, Nichenametla S, Clapper J, Specker B, Dey M.	Sci Rep	10.1038/srep28797	2016
	Gut microbiome and Mediterranean diet in the context of obesity. Current knowledge, perspectives and potential therapeutic targets.	Tsigalou C, Paraschaki A, Karvelas A, Kantartzi K, Gagali K, Tsairidis D, Bezirtzoglou E.	Metabol Open	10.1016/j.metop.2021.100081	2021
	Characterization of Two Parabacteroides distasonis Candidate Strains as New Live Biotherapeutics against Obesity.	Cuffaro B, Boutillier D, Desramaut J, Jablaoui A, Werkmeister E, Trottein F, Waligora-Dupriet AJ, Rhimi M, Maguin E, Grangette C.	Cells	10.3390/cells12091260	2023
	Insect-based diet, a promising nutritional source, modulates gut microbiota composition and SCFAs production in laying hens.	Borrelli L, Coretti L, Dipineto L, Bovera F, Menna F, Chiariotti L, Nizza A, Lembo F, Fioretti A.	Sci Rep	10.1038/s41598-017-16560-6	2017
	Alteration of gut microbiota in wild-borne long-tailed macaques after 1-year being housed in hygienic captivity.	Sawaswong V, Chanchaem P, Kemthong T, Warit S, Chaiprasert A, Malaivijitnond S, Payungporn S.	Sci Rep	10.1038/s41598-023-33163-6	2023
Pathogenicity	ADS024, a single-strain live biotherapeutic product of Bacillus velezensis alleviates dextran sulfate-mediated colitis in mice, protects human colonic epithelial cells against apoptosis, and maintains epithelial barrier function	Irwin S, Chupina Estrada A, Nelson B, Bullock A, Limketkai B, Ho W, Acton S, Chesnel L, Koon H.	Front Microbiol		2023
	Understanding dysbiosis and resilience in the human gut microbiome: biomarkers, interventions, and challenges.	Safarchi A, Al-Qadami G, Tran CD, Conlon M.	Front Microbiol	10.3389/fmicb.2025.1559521	2025
Pathogenicity	Adlercreutzia equolifaciens Is an Anti-Inflammatory Commensal Bacterium with Decreased Abundance in Gut Microbiota of Patients with Metabolic Liver Disease.	Onate FP, Chamignon C, Burz SD, Lapaque N, Monnoye M, Philippe C, Bredel M, Chene L, Farin W, Paillarse JM, Boursier J, Ratziu V, Mousset PY, Dore J, Gerard P, Blottiere HM.	Int J Mol Sci	10.3390/ijms241512232	2023
	Next generation probiotics in disease amelioration.	Chang CJ, Lin TL, Tsai YL, Wu TR, Lai WF, Lu CC, Lai HC.	J Food Drug Anal	10.1016/j.jfda.2018.12.011	2019
	Host genes and their effect on the intestinal microbiome garden.	Jacobs J, Braun J.	Genome Med	10.1186/s13073-014-0119-x	2014
	Methanobrevibacter smithii cell variants in human physiology and pathology: A review.	Malat I, Drancourt M, Grine G.	Heliyon	10.1016/j.heliyon.2024.e36742	2024
	Methanogenic patterns in the gut microbiome are associated with survival in a population of feral horses.	Stothart MR, McLoughlin PD, Medill SA, Greuel RJ, Wilson AJ, Poissant J.	Nat Commun	10.1038/s41467-024-49963-x	2024
Genetics	Host diet shapes functionally differentiated gut microbiomes in sympatric speciation of blind mole rats in Upper Galilee, Israel.	Kuang Z, Li F, Duan Q, Tian C, Nevo E, Li K.	Front Microbiol	10.3389/fmicb.2022.1062763	2022
	Integrative metagenomic and metabolomic analyses reveal the potential of gut microbiota to exacerbate acute pancreatitis.	Liu J, Yan Q, Li S, Jiao J, Hao Y, Zhang G, Zhang Q, Luo F, Zhang Y, Lv Q, Zhang W, Zhang A, Song H, Xin Y, Ma Y, Owusu L, Ma X, Yin P, Shang D.	NPJ Biofilms Microbiomes	10.1038/s41522-024-00499-4	2024
	Ethnic variations in metabolic syndrome components and their associations with the gut microbiota: the HELIUS study.	Balvers M, de Goffau M, van Riel N, van den Born BJ, Galenkamp H, Zwinderman K, Nieuwdorp M, Levin E.	Genome Med	10.1186/s13073-024-01295-7	2024
Pathogenicity	Modulating a prebiotic food source influences inflammation and immune-regulating gut microbes and metabolites: insights from the BE GONE trial.	Zhang X, Irajizad E, Hoffman KL, Fahrmann JF, Li F, Seo YD, Browman GJ, Dennison JB, Vykoukal J, Luna PN, Siu W, Wu R, Murage E, Ajami NJ, McQuade JL, Wargo JA, Long JP, Do KA, Lampe JW, Basen-Engquist KM, Okhuysen PC, Kopetz S, Hanash SM, Petrosino JF, Scheet P, Daniel CR.	EBioMedicine	10.1016/j.ebiom.2023.104873	2023
	Next generation probiotics for human health: An emerging perspective.	Jan T, Negi R, Sharma B, Kumar S, Singh S, Rai AK, Shreaz S, Rustagi S, Chaudhary N, Kaur T, Kour D, Sheikh MA, Kumar K, Yadav AN, Ahmed N.	Heliyon	10.1016/j.heliyon.2024.e35980	2024
Genetics	Changes in Gut Microbiota of Patients with Atopic Dermatitis During Balneotherapy.	Thirion F, Guilly S, Fromentin S, Plaza Onate F, Alvarez AS, Le Chatelier E, Pons N, Levenez F, Quinquis B, Ehrlich S, Dore J, Martin R, Seite S.	Clin Cosmet Investig Dermatol	10.2147/ccid.s342104	2022
	B. vulgatus ameliorates high-fat diet-induced obesity through modulating intestinal serotonin synthesis and lipid absorption in mice.	Wen X, Feng X, Xin F, An R, Huang H, Mao L, Liu P, Zhang J, Huang H, Liu X, Wang W.	Gut Microbes	10.1080/19490976.2024.2423040	2024
	Networks of gut bacteria relate to cardiovascular disease in a multi-ethnic population: the HELIUS study.	Warmbrunn MV, Boulund U, Aron-Wisnewsky J, de Goffau MC, Abeka RE, Davids M, Bresser LRF, Levin E, Clement K, Galenkamp H, Ferwerda B, van den Born BJH, Kurilshikov A, Fu J, Zwinderman AH, Soeters MR, van Raalte DH, Herrema H, Groen AK, Nieuwdorp M.	Cardiovasc Res	10.1093/cvr/cvae018	2024
	Gut bacterial profiles in Parkinson's disease: A systematic review.	Li Z, Liang H, Hu Y, Lu L, Zheng C, Fan Y, Wu B, Zou T, Luo X, Zhang X, Zeng Y, Liu Z, Zhou Z, Yue Z, Ren Y, Li Z, Su Q, Xu P.	CNS Neurosci Ther	10.1111/cns.13990	2023
	Fecal microbiota profiles of growing pigs and their relation to growth performance.	Konig E, Beasley S, Heponiemi P, Kivinen S, Rakkolainen J, Salminen S, Collado MC, Borman T, Lahti L, Piirainen V, Valros A, Heinonen M.	PLoS One	10.1371/journal.pone.0302724	2024
Genetics	Variations in the Relative Abundance of Gut Bacteria Correlate with Lipid Profiles in Healthy Adults.	Kalnina I, Gudra D, Silamikelis I, Viksne K, Roga A, Skinderskis E, Fridmanis D, Klovins J.	Microorganisms	10.3390/microorganisms11112656	2023
Phylogeny	Fine-scale spatial variation shape fecal microbiome diversity and composition in black-tailed prairie dogs (Cynomys ludovicianus).	Neha SA, Salazar-Bravo J.	BMC Microbiol	10.1186/s12866-023-02778-0	2023
Phylogeny	Luminal and mucosa-associated caecal microbiota of chickens after experimental Campylobacter jejuni infection in the absence of Campylobacter-specific phages of group II and III.	Hankel J, Kittler S, Chuppava B, Galvez E, Strowig T, Becker A, von Kockritz-Blickwede M, Plotz M, Visscher C.	Microb Genom	10.1099/mgen.0.000874	2022
Pathogenicity	DMARDs-Gut Microbiota Feedback: Implications in the Response to Therapy.	Zaragoza-Garcia O, Castro-Alarcon N, Perez-Rubio G, Guzman-Guzman IP.	Biomolecules	10.3390/biom10111479	2020
	Cross-feeding in the gut microbiome: Ecology and mechanisms.	Culp EJ, Goodman AL.	Cell Host Microbe	10.1016/j.chom.2023.03.016	2023
	Probiotic and postbiotic analytical methods: a perspective of available enumeration techniques.	Boyte ME, Benkowski A, Pane M, Shehata HR.	Front Microbiol	10.3389/fmicb.2023.1304621	2023
	Association of the Gut Microbiota with Weight-Loss Response within a Retail Weight-Management Program.	Dhakal S, McCormack L, Dey M.	Microorganisms	10.3390/microorganisms8081246	2020
	How does age determine the development of human immune-mediated arthritis?	Degboe Y, Vastert SJ, Prakken BJ, McInnes IB.	Nat Rev Rheumatol	10.1038/s41584-022-00814-3	2022
Phylogeny	Human genetics shape the gut microbiome.	Goodrich JK, Waters JL, Poole AC, Sutter JL, Koren O, Blekhman R, Beaumont M, Van Treuren W, Knight R, Bell JT, Spector TD, Clark AG, Ley RE.	Cell	10.1016/j.cell.2014.09.053	2014
	Preliminary evidence for an influence of exposure to polycyclic aromatic hydrocarbons on the composition of the gut microbiota and neurodevelopment in three-year-old healthy children.	Zhang W, Sun Z, Zhang Q, Sun Z, Su Y, Song J, Wang B, Gao R.	BMC Pediatr	10.1186/s12887-021-02539-w	2021
	Rumen Epithelial Communities Share a Core Bacterial Microbiota: A Meta-Analysis of 16S rRNA Gene Illumina MiSeq Sequencing Datasets.	Anderson CJ, Koester LR, Schmitz-Esser S.	Front Microbiol	10.3389/fmicb.2021.625400	2021
Metabolism	From correlation to causality: the case of Subdoligranulum.	Van Hul M, Le Roy T, Prifti E, Dao MC, Paquot A, Zucker JD, Delzenne NM, Muccioli G, Clement K, Cani PD.	Gut Microbes	10.1080/19490976.2020.1849998	2020
	A Cross-Scale Neutral Theory Approach to the Influence of Obesity on Community Assembly of Human Gut Microbiome.	Li W, Yuan Y, Xia Y, Sun Y, Miao Y, Ma S.	Front Microbiol	10.3389/fmicb.2018.02320	2018
Pathogenicity	Proteobacteria Overgrowth and Butyrate-Producing Taxa Depletion in the Gut Microbiota of Glycogen Storage Disease Type 1 Patients.	Ceccarani C, Bassanini G, Montanari C, Casiraghi MC, Ottaviano E, Morace G, Biasucci G, Paci S, Borghi E, Verduci E.	Metabolites	10.3390/metabo10040133	2020
	Light-Stress Influences the Composition of the Murine Gut Microbiome, Memory Function, and Plasma Metabolome.	Kim YM, Snijders AM, Brislawn CJ, Stratton KG, Zink EM, Fansler SJ, Metz TO, Mao JH, Jansson JK.	Front Mol Biosci	10.3389/fmolb.2019.00108	2019
	Next-Generation Probiotics as Novel Therapeutics for Improving Human Health: Current Trends and Future Perspectives.	Abouelela ME, Helmy YA.	Microorganisms	10.3390/microorganisms12030430	2024
	Combined Toxicity Evaluation of Ochratoxin A and Aflatoxin B1 on Kidney and Liver Injury, Immune Inflammation, and Gut Microbiota Alteration Through Pair-Feeding Pullet Model.	Qing H, Huang S, Zhan K, Zhao L, Zhang J, Ji C, Ma Q.	Front Immunol	10.3389/fimmu.2022.920147	2022
Metabolism	Next Generation Microbiome Research: Identification of Keystone Species in the Metabolic Regulation of Host-Gut Microbiota Interplay.	Tudela H, Claus SP, Saleh M.	Front Cell Dev Biol	10.3389/fcell.2021.719072	2021
Phylogeny	Re-initiation of Oral Food Intake Following Enteral Nutrition Alters Oral and Gut Microbiota Communities.	Katagiri S, Shiba T, Tohara H, Yamaguchi K, Hara K, Nakagawa K, Komatsu K, Watanabe K, Ohsugi Y, Maekawa S, Iwata T.	Front Cell Infect Microbiol	10.3389/fcimb.2019.00434	2019
	The Immune Barrier of Porcine Uterine Mucosa Differs Dramatically at Proliferative and Secretory Phases and Could Be Positively Modulated by Colonizing Microbiota.	Han D, Sun P, Hu Y, Wang J, Hua G, Chen J, Shao C, Tian F, Darwish HYA, Tai Y, Yang X, Chang J, Ma Y.	Front Immunol	10.3389/fimmu.2021.750808	2021
Genetics	A network approach to investigating the key microbes and stability of gut microbial communities in a mouse neuropathic pain model.	Brandon-Mong GJ, Shaw GT, Chen WH, Chen CC, Wang D.	BMC Microbiol	10.1186/s12866-020-01981-7	2020
	Clinically Effective Molecules of Natural Origin for Obesity Prevention or Treatment.	Hidalgo-Lozada GM, Villarruel-Lopez A, Nuno K, Garcia-Garcia A, Sanchez-Nuno YA, Ramos-Garcia CO.	Int J Mol Sci	10.3390/ijms25052671	2024
	Investigating the Mechanistic Differences of Obesity-Inducing Lactobacillus kefiranofaciens M1 and Anti-obesity Lactobacillus mali APS1 by Microbolomics and Metabolomics.	Lin YC, Chen YT, Li KY, Chen MJ.	Front Microbiol	10.3389/fmicb.2020.01454	2020
Metabolism	Depletion of microbiome-derived molecules in the host using Clostridium genetics.	Guo CJ, Allen BM, Hiam KJ, Dodd D, Van Treuren W, Higginbottom S, Nagashima K, Fischer CR, Sonnenburg JL, Spitzer MH, Fischbach MA.	Science	10.1126/science.aav1282	2019
Pathogenicity	B Cells and Microbiota in Autoimmunity.	Botia-Sanchez M, Alarcon-Riquelme ME, Galicia G.	Int J Mol Sci	10.3390/ijms22094846	2021
	Gut microbiota-derived metabolites in obesity: a systematic review.	Ejtahed HS, Angoorani P, Soroush AR, Hasani-Ranjbar S, Siadat SD, Larijani B.	Biosci Microbiota Food Health	10.12938/bmfh.2019-026	2020
Pathogenicity	Physical fitness in community-dwelling older adults is linked to dietary intake, gut microbiota, and metabolomic signatures.	Castro-Mejia JL, Khakimov B, Krych L, Bulow J, Bechshoft RL, Hojfeldt G, Mertz KH, Garne ES, Schacht SR, Ahmad HF, Kot W, Hansen LH, Perez-Cueto FJA, Lind MV, Lassen AJ, Tetens I, Jensen T, Reitelseder S, Jespersen AP, Holm L, Engelsen SB, Nielsen DS.	Aging Cell	10.1111/acel.13105	2020
Metabolism	Gut Microbiota Serves a Predictable Outcome of Short-Term Low-Carbohydrate Diet (LCD) Intervention for Patients with Obesity.	Zhang S, Wu P, Tian Y, Liu B, Huang L, Liu Z, Lin N, Xu N, Ruan Y, Zhang Z, Wang M, Cui Z, Zhou H, Xie L, Chen H, Sun J.	Microbiol Spectr	10.1128/spectrum.00223-21	2021
Genetics	Reduced B12 uptake and increased gastrointestinal formate are associated with archaeome-mediated breath methane emission in humans.	Kumpitsch C, Fischmeister FPS, Mahnert A, Lackner S, Wilding M, Sturm C, Springer A, Madl T, Holasek S, Hogenauer C, Berg IA, Schoepf V, Moissl-Eichinger C.	Microbiome	10.1186/s40168-021-01130-w	2021
Enzymology	Intestinal Morphometry, Enzymatic and Microbial Activity in Laying Hens Fed Different Levels of a Hermetia illucens Larvae Meal and Toxic Elements Content of the Insect Meal and Diets.	Moniello G, Ariano A, Panettieri V, Tulli F, Olivotto I, Messina M, Randazzo B, Severino L, Piccolo G, Musco N, Addeo NF, Hassoun G, Bovera F.	Animals (Basel)	10.3390/ani9030086	2019
Pathogenicity	Gut microbiota and butyrate level changes associated with the long-term administration of proton pump inhibitors to old rats.	Lee SM, Kim N, Nam RH, Park JH, Choi SI, Park YT, Kim YR, Seok YJ, Shin CM, Lee DH.	Sci Rep	10.1038/s41598-019-43112-x	2019
Metabolism	Resistant starch, microbiome, and precision modulation.	Dobranowski PA, Stintzi A.	Gut Microbes	10.1080/19490976.2021.1926842	2021
Phylogeny	Precise Fecal Microbiome of the Herbivorous Tibetan Antelope Inhabiting High-Altitude Alpine Plateau.	Bai X, Lu S, Yang J, Jin D, Pu J, Diaz Moya S, Xiong Y, Rossello-Mora R, Xu J.	Front Microbiol	10.3389/fmicb.2018.02321	2018
Phylogeny	Dynamics of Gut Microbiota and Clinical Variables after Ketogenic and Mediterranean Diets in Drug-Naïve Patients with Type 2 Diabetes Mellitus and Obesity.	Deledda A, Palmas V, Heidrich V, Fosci M, Lombardo M, Cambarau G, Lai A, Melis M, Loi E, Loviselli A, Manzin A, Velluzzi F.	Metabolites	10.3390/metabo12111092	2022
	Gut microbiota phenotypes of obesity.	Stanislawski MA, Dabelea D, Lange LA, Wagner BD, Lozupone CA.	NPJ Biofilms Microbiomes	10.1038/s41522-019-0091-8	2019
	Shifts on Gut Microbiota Associated to Mediterranean Diet Adherence and Specific Dietary Intakes on General Adult Population.	Garcia-Mantrana I, Selma-Royo M, Alcantara C, Collado MC.	Front Microbiol	10.3389/fmicb.2018.00890	2018
	Lack of Adrenomedullin Results in Microbiota Changes and Aggravates Azoxymethane and Dextran Sulfate Sodium-Induced Colitis in Mice.	Martinez-Herrero S, Larrayoz IM, Narro-Iniguez J, Villanueva-Millan MJ, Recio-Fernandez E, Perez-Matute P, Oteo JA, Martinez A.	Front Physiol	10.3389/fphys.2016.00595	2016
Phylogeny	Strategies for the Identification and Assessment of Bacterial Strains with Specific Probiotic Traits.	Torres-Maravilla E, Reyes-Pavon D, Benitez-Cabello A, Gonzalez-Vazquez R, Ramirez-Chamorro LM, Langella P, Bermudez-Humaran LG.	Microorganisms	10.3390/microorganisms10071389	2022
	Human gut microbiome: hopes, threats and promises.	Cani PD.	Gut	10.1136/gutjnl-2018-316723	2018
	The Consumption of Bicarbonate-Rich Mineral Water Improves Glycemic Control.	Murakami S, Goto Y, Ito K, Hayasaka S, Kurihara S, Soga T, Tomita M, Fukuda S.	Evid Based Complement Alternat Med	10.1155/2015/824395	2015
	Research Advances of d-allulose: An Overview of Physiological Functions, Enzymatic Biotransformation Technologies, and Production Processes.	Xia Y, Cheng Q, Mu W, Hu X, Sun Z, Qiu Y, Liu X, Wang Z.	Foods	10.3390/foods10092186	2021
	Gut Microbiota Modulation as a Novel Therapeutic Strategy in Cardiometabolic Diseases.	Mutalub YB, Abdulwahab M, Mohammed A, Yahkub AM, Al-Mhanna SB, Yusof W, Tang SP, Rasool AHG, Mokhtar SS.	Foods	10.3390/foods11172575	2022
Metabolism	Microbiota and body weight control: Weight watchers within?	Boscaini S, Leigh SJ, Lavelle A, Garcia-Cabrerizo R, Lipuma T, Clarke G, Schellekens H, Cryan JF.	Mol Metab	10.1016/j.molmet.2021.101427	2022
	A taxonomic signature of obesity in a large study of American adults.	Peters BA, Shapiro JA, Church TR, Miller G, Trinh-Shevrin C, Yuen E, Friedlander C, Hayes RB, Ahn J.	Sci Rep	10.1038/s41598-018-28126-1	2018
Genetics	Enabling rational gut microbiome manipulations by understanding gut ecology through experimentally-evidenced in silico models.	Molina Ortiz JP, McClure DD, Shanahan ER, Dehghani F, Holmes AJ, Read MN.	Gut Microbes	10.1080/19490976.2021.1965698	2021
	Over-feeding the gut microbiome: A scoping review on health implications and therapeutic perspectives.	Barone M, D'Amico F, Fabbrini M, Rampelli S, Brigidi P, Turroni S.	World J Gastroenterol	10.3748/wjg.v27.i41.7041	2021
	Multi-omics Analysis Revealed Coordinated Responses of Rumen Microbiome and Epithelium to High-Grain-Induced Subacute Rumen Acidosis in Lactating Dairy Cows.	Mu Y, Qi W, Zhang T, Zhang J, Mao S.	mSystems	10.1128/msystems.01490-21	2022
	Genetic Determinants of the Gut Microbiome in UK Twins.	Goodrich JK, Davenport ER, Beaumont M, Jackson MA, Knight R, Ober C, Spector TD, Bell JT, Clark AG, Ley RE.	Cell Host Microbe	10.1016/j.chom.2016.04.017	2016
Metabolism	Bacteroides uniformis CECT 7771 Modulates the Brain Reward Response to Reduce Binge Eating and Anxiety-Like Behavior in Rat.	Agusti A, Campillo I, Balzano T, Benitez-Paez A, Lopez-Almela I, Romani-Perez M, Forteza J, Felipo V, Avena NM, Sanz Y.	Mol Neurobiol	10.1007/s12035-021-02462-2	2021
	Gut Dysbiosis in Patients with Anorexia Nervosa.	Morita C, Tsuji H, Hata T, Gondo M, Takakura S, Kawai K, Yoshihara K, Ogata K, Nomoto K, Miyazaki K, Sudo N.	PLoS One	10.1371/journal.pone.0145274	2015
	Changes of Colonic Bacterial Composition in Parkinson's Disease and Other Neurodegenerative Diseases.	Gerhardt S, Mohajeri MH.	Nutrients	10.3390/nu10060708	2018
	Gut Microbiota in Cardiovascular Health and Disease.	Tang WH, Kitai T, Hazen SL.	Circ Res	10.1161/circresaha.117.309715	2017
Phylogeny	Pretreatment gut microbiome predicts chemotherapy-related bloodstream infection.	Montassier E, Al-Ghalith GA, Ward T, Corvec S, Gastinne T, Potel G, Moreau P, de la Cochetiere MF, Batard E, Knights D.	Genome Med	10.1186/s13073-016-0301-4	2016
Genetics	A review of 10 years of human microbiome research activities at the US National Institutes of Health, Fiscal Years 2007-2016.	NIH Human Microbiome Portfolio Analysis Team.	Microbiome	10.1186/s40168-019-0620-y	2019
	Enlightening the taxonomy darkness of human gut microbiomes with a cultured biobank.	Liu C, Du MX, Abuduaini R, Yu HY, Li DH, Wang YJ, Zhou N, Jiang MZ, Niu PX, Han SS, Chen HH, Shi WY, Wu L, Xin YH, Ma J, Zhou Y, Jiang CY, Liu HW, Liu SJ.	Microbiome	10.1186/s40168-021-01064-3	2021
	Bile diversion to the distal small intestine has comparable metabolic benefits to bariatric surgery.	Flynn CR, Albaugh VL, Cai S, Cheung-Flynn J, Williams PE, Brucker RM, Bordenstein SR, Guo Y, Wasserman DH, Abumrad NN.	Nat Commun	10.1038/ncomms8715	2015
Enzymology	State of the Art in the Culture of the Human Microbiota: New Interests and Strategies.	Tidjani Alou M, Naud S, Khelaifia S, Bonnet M, Lagier JC, Raoult D.	Clin Microbiol Rev	10.1128/cmr.00129-19	2020
Metabolism	Links between Dietary Protein Sources, the Gut Microbiota, and Obesity.	Madsen L, Myrmel LS, Fjaere E, Liaset B, Kristiansen K.	Front Physiol	10.3389/fphys.2017.01047	2017
Metabolism	Impact of short-chain galactooligosaccharides on the gut microbiome of lactose-intolerant individuals.	Azcarate-Peril MA, Ritter AJ, Savaiano D, Monteagudo-Mera A, Anderson C, Magness ST, Klaenhammer TR.	Proc Natl Acad Sci U S A	10.1073/pnas.1606722113	2017
	Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.	Seshadri R, Leahy SC, Attwood GT, Teh KH, Lambie SC, Cookson AL, Eloe-Fadrosh EA, Pavlopoulos GA, Hadjithomas M, Varghese NJ, Paez-Espino D, Hungate1000 project collaborators, Perry R, Henderson G, Creevey CJ, Terrapon N, Lapebie P, Drula E, Lombard V, Rubin E, Kyrpides NC, Henrissat B, Woyke T, Ivanova NN, Kelly WJ.	Nat Biotechnol	10.1038/nbt.4110	2018
Metabolism	Repeated inoculation of cattle rumen with bison rumen contents alters the rumen microbiome and improves nitrogen digestibility in cattle.	Ribeiro GO, Oss DB, He Z, Gruninger RJ, Elekwachi C, Forster RJ, Yang W, Beauchemin KA, McAllister TA.	Sci Rep	10.1038/s41598-017-01269-3	2017
Phylogeny	The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism.	Just S, Mondot S, Ecker J, Wegner K, Rath E, Gau L, Streidl T, Hery-Arnaud G, Schmidt S, Lesker TR, Bieth V, Dunkel A, Strowig T, Hofmann T, Haller D, Liebisch G, Gerard P, Rohn S, Lepage P, Clavel T.	Microbiome	10.1186/s40168-018-0510-8	2018
Enzymology	Exposure to household furry pets influences the gut microbiota of infant at 3-4 months following various birth scenarios.	Tun HM, Konya T, Takaro TK, Brook JR, Chari R, Field CJ, Guttman DS, Becker AB, Mandhane PJ, Turvey SE, Subbarao P, Sears MR, Scott JA, Kozyrskyj AL, CHILD Study Investigators.	Microbiome	10.1186/s40168-017-0254-x	2017
Phylogeny	Phylosymbiosis: Relationships and Functional Effects of Microbial Communities across Host Evolutionary History.	Brooks AW, Kohl KD, Brucker RM, van Opstal EJ, Bordenstein SR.	PLoS Biol	10.1371/journal.pbio.2000225	2016
Metabolism	Diet-microbiota interactions as moderators of human metabolism.	Sonnenburg JL, Backhed F.	Nature	10.1038/nature18846	2016
	The first 1000 cultured species of the human gastrointestinal microbiota.	Rajilic-Stojanovic M, de Vos WM.	FEMS Microbiol Rev	10.1111/1574-6976.12075	2014
Cultivation	Species-targeted sorting and cultivation of commensal bacteria from the gut microbiome using flow cytometry under anaerobic conditions.	Bellais S, Nehlich M, Ania M, Duquenoy A, Mazier W, van den Engh G, Baijer J, Treichel NS, Clavel T, Belotserkovsky I, Thomas V	Microbiome	10.1186/s40168-021-01206-7	2022
Pathogenicity	Gilbert's Syndrome and the Gut Microbiota - Insights From the Case-Control BILIHEALTH Study.	Zohrer PA, Hana CA, Seyed Khoei N, Molzer C, Hormann-Wallner M, Tosevska A, Doberer D, Marculescu R, Bulmer AC, Herbold CW, Berry D, Wagner KH	Front Cell Infect Microbiol	10.3389/fcimb.2021.701109	2021
Pathogenicity	The Keystone commensal bacterium Christensenella minuta DSM 22607 displays anti-inflammatory properties both in vitro and in vivo.	Kropp C, Le Corf K, Relizani K, Tambosco K, Martinez C, Chain F, Rawadi G, Langella P, Claus SP, Martin R	Sci Rep	10.1038/s41598-021-90885-1	2021
	Draft Genome Analysis of Christensenella minuta DSM 22607, exhibiting an unusual expansion of transporter homologs of unknown function.	Coil DA, Jospin G, Eisen JA	J Genomics	10.7150/jgen.43162	2020
Genetics	Genome Sequence of Christensenella minuta DSM 22607T.	Rosa BA, Hallsworth-Pepin K, Martin J, Wollam A, Mitreva M	Genome Announc	10.1128/genomeA.01451-16	2017
	Christensenella regulated by Huang-Qi-Ling-Hua-San is a key factor by which to improve type 2 diabetes.	Pan T, Zheng S, Zheng W, Shi C, Ning K, Zhang Q, Xie Y, Xiang H, Xie Q	Front Microbiol	10.3389/fmicb.2022.1022403	2022
Genetics	Maliibacterium massiliense gen. nov. sp. nov., Isolated from Human Feces and Proposal of Maliibacteriaceae fam. nov.	Traore SI, Lo CI, Mossaab M, Durand G, Lagier JC, Raoult D, Fournier PE, Fenollar F.	Curr Microbiol	10.1007/s00284-023-03301-4	2023
Metabolism	Description of Christensenella minuta gen. nov., sp. nov., isolated from human faeces, which forms a distinct branch in the order Clostridiales, and proposal of Christensenellaceae fam. nov.	Morotomi M, Nagai F, Watanabe Y	Int J Syst Evol Microbiol	10.1099/ijs.0.026989-0	2011
Phylogeny	Taxonomic Description and Genome Sequence of Christensenella intestinihominis sp. nov., a Novel Cholesterol-Lowering Bacterium Isolated From Human Gut.	Zou Y, Xue W, Lin X, Hu T, Liu SW, Sun CH, Luo G, Lv M, Dai Y, Kristiansen K, Xiao L	Front Microbiol	10.3389/fmicb.2021.632361	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21228	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22607
#26303	IJSEM 144 2012 ( DOI 10.1099/ijs.0.026989-0 , PubMed 21357455 )
#29932	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26303
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Christensenella minuta (DSM 22607, JCM 16072, YIT 12065)

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