Name: Amorphus suaedae YC6899
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24748

Type strain:

Species: Amorphus suaedae

Strain Designation: YC6899

Culture col. no.: DSM 23349, KACC 14912, NBRC 107845

Strain history: <- Y. R. Chung, Gyeongsang Natl. Univ. (GNU), Jinju, Korea; YC6899 <- F. Bibi

NCBI tax ID(s): 1327753 (species)

Section

Amorphus suaedae YC6899 is an aerobe, mesophilic, Gram-negative Proteobacterium that was isolated from root of the halophyte Suaedae maritima collected from a tidal flat area.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	15-12-2021 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Proteobacteria
	Class	Alphaproteobacteria
	Order	Hyphomicrobiales
	Family	Amorphaceae
	Genus	Amorphus
	Species	Amorphus suaedae
	Full Scientific Name (PNU)	Amorphus suaedae Hwang et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30986]	Gram stain	negative
[Ref.: #30986]	Cell length	1.85 µm
[Ref.: #30986]	Cell width	0.85 µm
[Ref.: #30986]	Cell shape	rod-shaped

[Ref.: #30986]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21178]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #21178]

Culture medium growth

[Ref.: #21178]

Culture medium link

Medium recipe at BacMedia

[Ref.: #21178]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21178]	growth	28 °C
[Ref.: #30986]	growth	12-40 °C
[Ref.: #30986]	optimum	31 °C

[Ref.: #21178]	Temperature range	mesophilic
[Ref.: #30986]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30986]			optimum	7.25
[Ref.: #30986]			growth	5.0-10.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30986]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30986]		NaCl		growth	0-10	%
[Ref.: #30986]		NaCl		optimum	3	%

[Ref.: #30986]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30986]	alanine ChEBI	+	carbon source
[Ref.: #30986]	asparagine ChEBI	+	carbon source
[Ref.: #30986]	aspartate ChEBI	+	carbon source
[Ref.: #30986]	cellobiose ChEBI	+	carbon source
[Ref.: #30986]	citrate ChEBI	+	carbon source
[Ref.: #30986]	dextrin ChEBI	+	carbon source
[Ref.: #30986]	fucose ChEBI	+	carbon source
[Ref.: #30986]	galactose ChEBI	+	carbon source
[Ref.: #30986]	glucose ChEBI	+	carbon source
[Ref.: #30986]	glucuronamide ChEBI	+	carbon source
[Ref.: #30986]	glutamate ChEBI	+	carbon source
[Ref.: #30986]	glycogen ChEBI	+	carbon source
[Ref.: #30986]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #30986]	serine ChEBI	+	carbon source
[Ref.: #30986]	sorbitol ChEBI	+	carbon source
[Ref.: #30986]	succinate ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30986]	acid phosphatase	+	3.1.3.2
[Ref.: #30986]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30986]	catalase	+	1.11.1.6
[Ref.: #30986]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21178]	Sample type/isolated from	root of the halophyte Suaedae maritima collected from a tidal flat area
[Ref.: #21178]	Host species	Suaeda maritima
[Ref.: #21178]	Geographic location (country and/or sea, region)	Namhae Island
[Ref.: #21178]	Country	Republic of Korea
[Ref.: #21178]	Country ISO 3 Code	KOR
[Ref.: #21178]	Continent	Asia

Isolation sources categories

#Environmental	#Terrestrial	#Tidal flat
#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21178]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21178]	Amorphus suaedae strain YC6899 16S ribosomal RNA gene, partial sequence	KC006961	1452	ENA	1327753 tax ID

[Ref.: #21178]	GC-content	61.3 mol%	fluorimetric
[Ref.: #30986]	GC-content	61.3 mol%

Availability in culture collections External links

[Ref.: #21178]

Culture collection no.

DSM 23349, KACC 14912, NBRC 107845

[Ref.: #20218]

Associated Passport(s) in StrainInfo

891374, 891375

References

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#21178

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23349

#30986

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27316 (see below)

#27316

IJSEM 3868 2013 ( DOI 10.1099/ijs.0.048959-0 , PubMed 23687061 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Amorphus suaedae in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF