Name: Celerinatantimonas yamalensis C7
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24746

Type strain:

Species: Celerinatantimonas yamalensis

Strain Designation: C7

Culture col. no.: DSM 21888, VKM B-2511

Strain history: <- V. A. Shcherbakova, Inst. Biochem. Physiol. Microorg., RAS, Pushchino, Russia; C7

NCBI tax ID(s): 559956 (species)

SI-ID 405731

DSM 21888

Special Collections

Section

Celerinatantimonas yamalensis C7 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from brine from a permafrost cryopeg.

Gram-negative
motile
rod-shaped
facultative anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Celerinatantimonadaceae*
	Genus	*Celerinatantimonas*
	Species	**Celerinatantimonas yamalensis**
	Full Scientific Name (LPSN)	Celerinatantimonas yamalensis Shcherbakova et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30856]	Gram stain	negative

[Ref.: #30856]	Cell length	3 µm

[Ref.: #30856]	Cell width	0.75 µm

[Ref.: #30856]	Cell shape	rod-shaped

[Ref.: #30856]	Motility	yes

[Ref.: #30856]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21219]

Culture medium

MEDIUM 514 PLUS ADDITIONAL SALT (DSMZ Medium 514b)

[Ref.: #21219]

Culture medium growth

[Ref.: #21219]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21219]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21219]	growth	15-22 °C
[Ref.: #30856]	growth	0-34 °C
[Ref.: #30856]	optimum	20 °C

	pH	Kind of pH		pH
[Ref.: #30856]			optimum	6.1
[Ref.: #30856]			growth	5.5-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30856]

Oxygen tolerance

facultative anaerobe

[Ref.: #30856]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30856]		NaCl		growth	2.0-12.0	%
[Ref.: #30856]		NaCl		optimum	7	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30856]	arabinose ChEBI	+	carbon source
[Ref.: #30856]	cellobiose ChEBI	+	carbon source
[Ref.: #30856]	citrate ChEBI	+	carbon source
[Ref.: #30856]	fructose ChEBI	+	carbon source
[Ref.: #30856]	gluconate ChEBI	+	carbon source
[Ref.: #30856]	glucose ChEBI	+	carbon source
[Ref.: #30856]	glutamate ChEBI	+	carbon source
[Ref.: #30856]	glycerol ChEBI	+	carbon source
[Ref.: #30856]	lactose ChEBI	+	carbon source
[Ref.: #30856]	maltose ChEBI	+	carbon source
[Ref.: #30856]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30856]	pyruvate ChEBI	+	carbon source
[Ref.: #30856]	raffinose ChEBI	+	carbon source
[Ref.: #30856]	sorbitol ChEBI	+	carbon source
[Ref.: #30856]	succinate ChEBI	+	carbon source
[Ref.: #30856]	sucrose ChEBI	+	carbon source
[Ref.: #30856]	tween 40 ChEBI	+	carbon source
[Ref.: #30856]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30856]	acid phosphatase	+	3.1.3.2
[Ref.: #30856]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30856]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21219]	Sample type/isolated from	brine from a permafrost cryopeg
[Ref.: #21219]	Geographic location (country and/or sea, region)	Yamal Peninsula area, northern Siberia (69° 50' N 159° 30' E)
[Ref.: #21219]	Country	Russia
[Ref.: #21219]	Country ISO 3 Code	RUS
[Ref.: #21219]	Continent	Asia
[Ref.: #21219]	Geographic location	69.8333°/159.5000°
* marker position based on {}

Isolation sources categories

#Environmental	#Microbial community	-
#Environmental	#Terrestrial	#Permafrost
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ039852 (>99% sequence identity) for Celerinatantimonas yamalensis subclade from Microbeatlas

Aquatic Samples	690
Soil Samples	2
Animal Samples	43
Plant Samples	9
Total Samples	744

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21219]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21219]	Celerinatantimonas yamalensis strain C7 16S ribosomal RNA gene, partial sequence	FJ039852	1433	GenBank ENA	559956 tax ID

[Ref.: #21219]	GC-content	44.7 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #30856]	GC-content	44.7 mol%

Availability in culture collections External links

[Ref.: #21219]

Culture collection no.

DSM 21888, VKM B-2511

[Ref.: #88574]

SI-ID 405731

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Celerinatantimonas yamalensis sp. nov., a cold-adapted diazotrophic bacterium from a cold permafrost brine.	Shcherbakova V, Chuvilskaya N, Rivkina E, Demidov N, Uchaeva V, Suetin S, Suzina N, Gilichinsky D	Int J Syst Evol Microbiol	10.1099/ijs.0.045997-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21219

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21888

#30856

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27186 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88574

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405731.1 )

#27186

IJSEM 4421 2013 ( DOI 10.1099/ijs.0.045997-0 , PubMed 23852153 )

* These data were automatically processed and therefore are not curated

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