Name: Actinopolyspora xinjiangensis DSM 46732
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24727

Type strain:

Species: Actinopolyspora xinjiangensis

Culture col. no.: DSM 46732, CCTCC AA 209080, KCTC 19656, TRM 40136, JCM 31478

Strain history: <- TW Guan, Tarim Univ., Xinjiang, China

NCBI tax ID(s): 405564 (species)

SI-ID 403601

DSM 46732

Special Collections

Section

Actinopolyspora xinjiangensis DSM 46732 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from hypersaline habitat.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Actinopolyspora*
	Species	**Actinopolyspora xinjiangensis**
	Full Scientific Name (LPSN)	Actinopolyspora xinjiangensis Guan et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %90.932

[Ref.: #69480]	Motility	no Confidence in %91.594

Multimedia content

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Caption:

Medium 1504 37°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

CM-MEDIUM (DSMZ Medium 1504)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #20249]	growth	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #67771]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

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Observation

quinones: MK-6, MK-10(H₄), MK-7, MK-9(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20249]	Sample type/isolated from	hypersaline habitat
[Ref.: #20249]	Geographic location (country and/or sea, region)	Xinjiang Province
[Ref.: #20249]	Country	China
[Ref.: #20249]	Country ISO 3 Code	CHN
[Ref.: #20249]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil from the Lop Nur salt lake
[Ref.: #67770]	Geographic location (country and/or sea, region)	Xinjiang Province, north-west China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From saline soil
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Condition

#Saline

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20249]	Actinopolyspora xinjiangensis strain TRM 40136 16S ribosomal RNA gene, partial sequence	GU479394	1411	GenBank ENA	405564 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinopolyspora xinjiangensis DSM 46732	GCA_900104475	scaffold	GenBank ENA	405564 tax ID
[Ref.: #66792]	Actinopolyspora xinjiangensis strain DSM 46732	405564.4	wgs	PATRIC	405564 tax ID	*
[Ref.: #66792]	Actinopolyspora xinjiangensis DSM 46732	2619619031	draft	JGI IMG/M	405564 tax ID	*

[Ref.: #20249]	GC-content	68.9 mol%
[Ref.: #67770]	GC-content	68.9 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinopolyspora xinjiangensis DSM 46732 NCBI: GCA_900104475.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinopolyspora xinjiangensis strain DSM 46732 PATRIC: 405564.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.932	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.867	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	77.358	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.711	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	89.763	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91.594	no

Availability in culture collections External links

[Ref.: #20249]

Culture collection no.

DSM 46732, CCTCC AA 209080, KCTC 19656, TRM 40136, JCM 31478

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SI-ID 403601

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinopolyspora righensis sp. nov., a novel halophilic actinomycete isolated from Saharan soil in Algeria.	Meklat A, Bouras N, Zitouni A, Mathieu F, Lebrihi A, Schumann P, Sproer C, Klenk HP, Sabaou N	Antonie Van Leeuwenhoek	10.1007/s10482-013-9948-7	2013	*
Phylogeny	Actinopolyspora xinjiangensis sp. nov., a novel exteremely halophilic actinomycete isolated from a salt lake in Xinjiang, China.	Guan TW, Liu Y, Zhao K, Xia ZF, Zhang XP, Zhang LL	Antonie Van Leeuwenhoek	10.1007/s10482-010-9458-9	2010	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20249

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46732

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88555

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403601.1 )

* These data were automatically processed and therefore are not curated

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Actinopolyspora xinjiangensis DSM 46732

Actinopolyspora xinjiangensis strain DSM 46732

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