Archive BacDiveID:10.13145/bacdive24727.20240916.9.1

Strain identifier

BacDive ID: 24727

Type strain:

Species: Actinopolyspora xinjiangensis

Strain history: <- TW Guan, Tarim Univ., Xinjiang, China

NCBI tax ID(s): 405564 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 20249

BacDive-ID: 24727

DSM-Number: 46732

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive

description: Actinopolyspora xinjiangensis DSM 46732 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from hypersaline habitat.

NCBI tax id

NCBI tax id: 405564
Matching level: species

strain history

@ref	history
20249	<- KCTC; KCTC 19656
67770	KCTC 19656 <-- T.-W. Guan; Tarim Univ., China; TRM 40136.
67771	<- TW Guan, Tarim Univ., Xinjiang, China

doi: 10.13145/bacdive24727.20240916.9.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Pseudonocardiales
family: Pseudonocardiaceae
genus: Actinopolyspora
species: Actinopolyspora xinjiangensis
full scientific name: Actinopolyspora xinjiangensis Guan et al. 2011

@ref: 20249

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinopolysporaceae

genus: Actinopolyspora

species: Actinopolyspora xinjiangensis

full scientific name: Actinopolyspora xinjiangensis Guan et al. 2011

type strain: yes

Morphology

cell morphology

@ref	gram stain	confidence	motility
67771	positive
69480	positive	90.932
69480		91.594	no

multimedia

@ref: 20249
multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_46732.jpg
caption: Medium 1504 37°C
intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
20249	CM-MEDIUM (DSMZ Medium 1504)	yes	https://mediadive.dsmz.de/medium/1504	Name: CM MEDIUM (DSMZ Medium 1504) Composition: NaCl 150.0 g/l Agar 20.0 g/l MgSO4 x 7 H2O 10.0 g/l Yeast extract 10.0 g/l Peptone 7.5 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l FeSO4 x 7 H2O Distilled water
20249	GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159)	yes	https://mediadive.dsmz.de/medium/1159	Name: GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159) Composition: NaCl 100.0 g/l Agar 15.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@ref	growth	type	temperature
20249	positive	growth	37
67770	positive	growth	37
67771	positive	growth	37

Physiology and metabolism

oxygen tolerance

@ref: 67771
oxygen tolerance: aerobe

spore formation

@ref: 69481
spore formation: yes
confidence: 100

observation

@ref: 67770
observation: quinones: MK-6, MK-10(H₄), MK-7, MK-9(H₄)

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent
20249	hypersaline habitat	Xinjiang Province	China	CHN	Asia
67770	Soil from the Lop Nur salt lake	Xinjiang Province, north-west China	China	CHN	Asia
67771	From saline soil		China	CHN	Asia

isolation source categories

Cat1: #Condition
Cat2: #Saline

Safety information

risk assessment

@ref: 20249
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 20249
description: Actinopolyspora xinjiangensis strain TRM 40136 16S ribosomal RNA gene, partial sequence
accession: GU479394
length: 1411
database: nuccore
NCBI tax ID: 405564

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Actinopolyspora xinjiangensis strain DSM 46732	405564.4	wgs	patric	405564
66792	Actinopolyspora xinjiangensis DSM 46732	2619619031	draft	img	405564
67770	Actinopolyspora xinjiangensis DSM 46732	GCA_900104475	scaffold	ncbi	405564

GC content

@ref	GC-content	method
20249	68.9
67770	68.9	high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

@ref	trait	model	description	prediction	confidence	training_data
69481	spore-forming	spore-forming	Ability to form endo- or exospores	yes	100	no
69480	gram-positive	gram-positive	Positive reaction to Gram-staining	yes	90.932	yes
69480	anaerobic	anaerobic	Ability to grow under anoxygenic conditions (including facultative anaerobes)	no	96.867	yes
69480	spore-forming	spore-forming	Ability to form endo- or exospores	yes	77.358	no
69480	aerobic	aerobic	Ability to grow under oxygenic conditions (including facultative aerobes)	yes	88.711	yes
69480	thermophilic	thermophile	Ability to grow at temperatures above or equal to 45°C	no	89.763	yes
69480	flagellated	motile2+	Ability to perform flagellated movement	no	91.594	no

External links

@ref: 20249

culture collection no.: DSM 46732, CCTCC AA 209080, KCTC 19656, TRM 40136, JCM 31478

straininfo link

@ref: 88555
straininfo: 403601

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	20524152	Actinopolyspora xinjiangensis sp. nov., a novel exteremely halophilic actinomycete isolated from a salt lake in Xinjiang, China.	Guan TW, Liu Y, Zhao K, Xia ZF, Zhang XP, Zhang LL	Antonie Van Leeuwenhoek	10.1007/s10482-010-9458-9	2010	Actinomycetales/chemistry/classification/isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/analysis, DNA, Ribosomal/analysis/genetics, Genes, rRNA, Molecular Sequence Data, RNA, Ribosomal, 16S/genetics, Salinity, Salt Tolerance, Sequence Analysis, DNA, Sodium Chloride/analysis, *Soil Microbiology, Spores, Bacterial/cytology, Temperature, Vitamin K 2/analysis	Genetics
Phylogeny	23754661	Actinopolyspora righensis sp. nov., a novel halophilic actinomycete isolated from Saharan soil in Algeria.	Meklat A, Bouras N, Zitouni A, Mathieu F, Lebrihi A, Schumann P, Sproer C, Klenk HP, Sabaou N	Antonie Van Leeuwenhoek	10.1007/s10482-013-9948-7	2013	Actinomycetales/classification/genetics/isolation & purification/physiology, Africa, Northern, Algeria, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Microscopy, Electron, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Temperature	Genetics

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
20249	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-46732	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46732)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
67771	Curators of the KCTC		https://kctc.kribb.re.kr/En/Kctc
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
69481	Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch	Predictions based on the model GenomeNet Sporulation v. 1	10.21203/rs.3.rs-2527258/v1
88555	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID403601.1