Strain identifier

BacDive ID: 24727

Type strain: Yes

Species: Actinopolyspora xinjiangensis

Strain history: <- TW Guan, Tarim Univ., Xinjiang, China

NCBI tax ID(s): 405564 (species)

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General

@ref: 20249

BacDive-ID: 24727

DSM-Number: 46732

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Actinopolyspora xinjiangensis DSM 46732 is an aerobe, spore-forming, mesophilic bacterium that was isolated from hypersaline habitat.

NCBI tax id

  • NCBI tax id: 405564
  • Matching level: species

strain history

@refhistory
20249<- KCTC; KCTC 19656
67770KCTC 19656 <-- T.-W. Guan; Tarim Univ., China; TRM 40136.
67771<- TW Guan, Tarim Univ., Xinjiang, China

doi: 10.13145/bacdive24727.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Actinopolyspora
  • species: Actinopolyspora xinjiangensis
  • full scientific name: Actinopolyspora xinjiangensis Guan et al. 2011

@ref: 20249

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinopolysporaceae

genus: Actinopolyspora

species: Actinopolyspora xinjiangensis

full scientific name: Actinopolyspora xinjiangensis Guan et al. 2011

type strain: yes

Morphology

cell morphology

@refgram stainmotilityconfidence
67771positive
69480no91.836
69480positive100

multimedia

  • @ref: 20249
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_46732.jpg
  • caption: Medium 1504 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
20249CM-MEDIUM (DSMZ Medium 1504)yeshttps://mediadive.dsmz.de/medium/1504Name: CM MEDIUM (DSMZ Medium 1504) Composition: NaCl 150.0 g/l Agar 20.0 g/l MgSO4 x 7 H2O 10.0 g/l Yeast extract 10.0 g/l Peptone 7.5 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l FeSO4 x 7 H2O Distilled water
20249GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159)yeshttps://mediadive.dsmz.de/medium/1159Name: GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159) Composition: NaCl 100.0 g/l Agar 15.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20249positivegrowth37mesophilic
67770positivegrowth37mesophilic
67771positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481yes100
69480yes100

observation

  • @ref: 67770
  • observation: quinones: MK-6, MK-10(H4), MK-7, MK-9(H4)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
20249hypersaline habitatXinjiang ProvinceChinaCHNAsia
67770Soil from the Lop Nur salt lakeXinjiang Province, north-west ChinaChinaCHNAsia
67771From saline soilChinaCHNAsia

isolation source categories

  • Cat1: #Condition
  • Cat2: #Saline

Safety information

risk assessment

  • @ref: 20249
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20249
  • description: Actinopolyspora xinjiangensis strain TRM 40136 16S ribosomal RNA gene, partial sequence
  • accession: GU479394
  • length: 1411
  • database: ena
  • NCBI tax ID: 405564

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Actinopolyspora xinjiangensis strain DSM 46732405564.4wgspatric405564
66792Actinopolyspora xinjiangensis DSM 467322619619031draftimg405564
67770Actinopolyspora xinjiangensis DSM 46732GCA_900104475scaffoldncbi405564

GC content

@refGC-contentmethod
2024968.9
6777068.9high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes90.905no
anaerobicno98.551yes
halophileyes65.512no
spore-formingyes76.042no
glucose-utilyes89.028no
aerobicyes90.571yes
flagellatedno97.08no
thermophileno93.455yes
motileno92.667no
glucose-fermentno88.307no

External links

@ref: 20249

culture collection no.: DSM 46732, CCTCC AA 209080, KCTC 19656, TRM 40136, JCM 31478

straininfo link

  • @ref: 88555
  • straininfo: 403601

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20524152Actinopolyspora xinjiangensis sp. nov., a novel exteremely halophilic actinomycete isolated from a salt lake in Xinjiang, China.Guan TW, Liu Y, Zhao K, Xia ZF, Zhang XP, Zhang LLAntonie Van Leeuwenhoek10.1007/s10482-010-9458-92010Actinomycetales/chemistry/*classification/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/analysis, DNA, Ribosomal/analysis/genetics, Genes, rRNA, Molecular Sequence Data, RNA, Ribosomal, 16S/genetics, *Salinity, *Salt Tolerance, Sequence Analysis, DNA, Sodium Chloride/analysis, *Soil Microbiology, Spores, Bacterial/cytology, Temperature, Vitamin K 2/analysisGenetics
Phylogeny23754661Actinopolyspora righensis sp. nov., a novel halophilic actinomycete isolated from Saharan soil in Algeria.Meklat A, Bouras N, Zitouni A, Mathieu F, Lebrihi A, Schumann P, Sproer C, Klenk HP, Sabaou NAntonie Van Leeuwenhoek10.1007/s10482-013-9948-72013Actinomycetales/*classification/genetics/*isolation & purification/physiology, Africa, Northern, Algeria, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Microscopy, Electron, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, TemperatureGenetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20249Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-46732Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46732)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
88555Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403601.1