Name: Thermotoga profunda AZM34c06
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24655

Type strain:

Species: Thermotoga profunda

Strain Designation: AZM34c06

Culture col. no.: DSM 23275, NBRC 106115

Strain history: <- K. Mori, NBRC, NITE (Natl. Inst. of Technol. and Evaluation), Japan; AZM34c06 <- K. Mori {2009}

NCBI tax ID(s): 1508420 (species)

SI-ID 399831

DSM 23275

Section

Thermotoga profunda AZM34c06 is an anaerobe, thermophilic bacterium that was isolated from water from a terrestrial hot spring collected at the bottom of a 1000 m deep well.

anaerobe
thermophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Thermotogota*
	Class	*Thermotogae*
	Order	*Thermotogales*
	Family	*Thermotogaceae*
	Genus	*Thermotoga*
	Species	**Thermotoga profunda**
	Full Scientific Name (LPSN)	Thermotoga profunda Mori et al. 2014

Synonym

"Pseudothermotoga profunda"

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21064]

Culture medium

THERMOTOGA PROFUNDA MEDIUM (DSMZ Medium 1539)

[Ref.: #21064]

Culture medium growth

[Ref.: #21064]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21064]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21064]			growth	60 °C

[Ref.: #21064]

Temperature range

thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21064]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21064]	Sample type/isolated from	water from a terrestrial hot spring collected at the bottom of a 1000 m deep well
[Ref.: #21064]	Geographic location (country and/or sea, region)	Nagano Prefecture, Hakuba-Himekawa hot spring
[Ref.: #21064]	Country	Japan
[Ref.: #21064]	Country ISO 3 Code	JPN
[Ref.: #21064]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Environmental	#Terrestrial	#Core sample
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21064]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermotoga profunda AZM34c06	GCA_000828675	complete	GenBank	1408160 tax ID	*
[Ref.: #66792]	Thermotoga profunda AZM34c06	1408160.3	complete	PATRIC	1408160 tax ID	*
[Ref.: #66792]	Thermotoga profunda AZM34c06	2791355052	complete	JGI IMG/M	1408160 tax ID	*

[Ref.: #21064]

GC-content

38.8 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermotoga profunda AZM34c06 AZM34c06 NCBI: GCA_000828675.1
[Ref.: #69480]	motile	yes	78.544	no
[Ref.: #69480]	flagellated	no	94.298	no
[Ref.: #69480]	gram-positive	no	96.71	no
[Ref.: #69480]	anaerobic	yes	99.443	yes
[Ref.: #69480]	aerobic	no	97.863	yes
[Ref.: #69480]	halophile	no	92.895	no
[Ref.: #69480]	spore-forming	no	90.552	no
[Ref.: #69480]	glucose-util	yes	87.677	no
[Ref.: #69480]	thermophile	yes	100	no
[Ref.: #69480]	glucose-ferment	no	53.544	no

Availability in culture collections External links

[Ref.: #21064]

Culture collection no.

DSM 23275, NBRC 106115

[Ref.: #88495]

SI-ID 399831

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Towards a congruent reclassification and nomenclature of the thermophilic species of the genus Pseudothermotoga within the order Thermotogales.	Belahbib H, Summers ZM, Fardeau ML, Joseph M, Tamburini C, Dolla A, Ollivier B, Armougom F	Syst Appl Microbiol	10.1016/j.syapm.2018.04.007	2018	*
Phylogeny	Thermotoga profunda sp. nov. and Thermotoga caldifontis sp. nov., anaerobic thermophilic bacteria isolated from terrestrial hot springs.	Mori K, Yamazoe A, Hosoyama A, Ohji S, Fujita N, Ishibashi JI, Kimura H, Suzuki KI	Int J Syst Evol Microbiol	10.1099/ijs.0.060137-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21064

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23275

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88495

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399831.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Thermotoga profunda in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Thermotoga profunda AZM34c06 AZM34c06

Change proposal

Change proposal