Strain identifier

BacDive ID: 24655

Type strain: Yes

Species: Thermotoga profunda

Strain Designation: AZM34c06

Strain history: <- K. Mori, NBRC, NITE (Natl. Inst. of Technol. and Evaluation), Japan; AZM34c06 <- K. Mori {2009}

NCBI tax ID(s): 1508420 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21064

BacDive-ID: 24655

DSM-Number: 23275

keywords: Bacteria, genome sequence, anaerobe, thermophilic

description: Thermotoga profunda AZM34c06 is an anaerobe, thermophilic bacterium that was isolated from water from a terrestrial hot spring collected at the bottom of a 1000 m deep well.

NCBI tax id

  • NCBI tax id: 1508420
  • Matching level: species

strain history: <- K. Mori, NBRC, NITE (Natl. Inst. of Technol. and Evaluation), Japan; AZM34c06 <- K. Mori {2009}

doi: 10.13145/bacdive24655.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/thermotogota
  • domain: Bacteria
  • phylum: Thermotogota
  • class: Thermotogae
  • order: Thermotogales
  • family: Thermotogaceae
  • genus: Thermotoga
  • species: Thermotoga profunda
  • full scientific name: Thermotoga profunda Mori et al. 2014
  • synonyms

    • @ref: 20215
    • synonym: Pseudothermotoga profunda

@ref: 21064

domain: Bacteria

phylum: Thermotogae

class: Thermotogae

order: Thermotogales

family: Thermotogaceae

genus: Thermotoga

species: Thermotoga profunda

full scientific name: Thermotoga profunda Mori et al. 2014

strain designation: AZM34c06

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 21064
  • name: THERMOTOGA PROFUNDA MEDIUM (DSMZ Medium 1539)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/1539
  • composition: Name: THERMOTOGA PROFUNDA MEDIUM (DSMZ Medium 1539) Composition: Na2CO3 1.96078 g/l D-Glucose 1.96078 g/l Yeast extract 0.980392 g/l L-Cysteine HCl x H2O 0.294118 g/l Na2S x 9 H2O 0.294118 g/l MgSO4 x 7 H2O 0.245098 g/l NH4Cl 0.245098 g/l CaCl2 x 2 H2O 0.148039 g/l Nitrilotriacetic acid 0.12549 g/l KH2PO4 0.0882353 g/l K2HPO4 0.0490196 g/l FeCl2 x 4 H2O 0.00980392 g/l NaCl 0.00980392 g/l MnCl2 x 4 H2O 0.000980392 g/l NiCl2 x 6 H2O 0.000980392 g/l ZnCl2 0.000980392 g/l Sodium resazurin 0.000490196 g/l Na2WO4 x 2 H2O 0.000392157 g/l Na2MoO4 x 2 H2O 0.000294118 g/l CoCl2 x 6 H2O 0.000294118 g/l Na2SeO3 x 5 H2O 0.000294118 g/l CuCl2 0.000196078 g/l H3BO3 9.80392e-05 g/l Pyridoxine hydrochloride 9.80392e-05 g/l Calcium D-(+)-pantothenate 4.90196e-05 g/l Thiamine HCl 4.90196e-05 g/l Riboflavin 4.90196e-05 g/l Nicotinic acid 4.90196e-05 g/l (±)-alpha-Lipoic acid 4.90196e-05 g/l p-Aminobenzoic acid 4.90196e-05 g/l Biotin 1.96078e-05 g/l Folic acid 1.96078e-05 g/l Vitamin B12 9.80392e-07 g/l Distilled water

culture temp

  • @ref: 21064
  • growth: positive
  • type: growth
  • temperature: 60
  • range: thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 21064
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 21064
  • sample type: water from a terrestrial hot spring collected at the bottom of a 1000 m deep well
  • geographic location: Nagano Prefecture, Hakuba-Himekawa hot spring
  • country: Japan
  • origin.country: JPN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Thermal spring
#Environmental#Terrestrial#Core sample
#Condition#Thermophilic (>45°C)

Safety information

risk assessment

  • @ref: 21064
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Thermotoga profunda AZM34c06 AZM34c06GCA_000828675completencbi1408160
66792Thermotoga profunda AZM34c061408160.3completepatric1408160
66792Thermotoga profunda AZM34c062791355052completeimg1408160

GC content

  • @ref: 21064
  • GC-content: 38.8
  • method: sequence analysis

External links

@ref: 21064

culture collection no.: DSM 23275, NBRC 106115

straininfo link

@refpassport
20218http://www.straininfo.net/strains/896710
20218http://www.straininfo.net/strains/896709

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24676729Thermotoga profunda sp. nov. and Thermotoga caldifontis sp. nov., anaerobic thermophilic bacteria isolated from terrestrial hot springs.Mori K, Yamazoe A, Hosoyama A, Ohji S, Fujita N, Ishibashi JI, Kimura H, Suzuki KIInt J Syst Evol Microbiol10.1099/ijs.0.060137-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gram-Negative Anaerobic Straight, Curved, and Helical Rods/*classification/genetics/isolation & purification, Hot Springs/*microbiology, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny29801938Towards a congruent reclassification and nomenclature of the thermophilic species of the genus Pseudothermotoga within the order Thermotogales.Belahbib H, Summers ZM, Fardeau ML, Joseph M, Tamburini C, Dolla A, Ollivier B, Armougom FSyst Appl Microbiol10.1016/j.syapm.2018.04.0072018Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Gram-Negative Anaerobic Straight, Curved, and Helical Rods/*classification/genetics, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, TemperatureTranscriptome

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
21064Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-23275Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23275)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes