Name: Thermotoga caldifontis AZM44c09
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24656

Type strain:

Species: Thermotoga caldifontis

Strain Designation: AZM44c09

Culture col. no.: DSM 23272, NBRC 106116

Strain history: <- K. Mori, NBRC, NITE (Natl. Inst. of Technol. and Evaluation), Japan; AZM44c09 <- K. Mori {2009}

NCBI tax ID(s): 1508419 (species)

SI-ID 406199

DSM 23272

Special Collections

DSMZ

Section

When using BacDive for research please cite our paper

Thermotoga caldifontis AZM44c09 is an anaerobe, thermophilic bacterium that was isolated from water from a terrestrial hot spring collected from a crack in a concrete wall.

anaerobe
thermophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Thermotogota*
	Class	*Thermotogae*
	Order	*Thermotogales*
	Family	*Thermotogaceae*
	Genus	*Thermotoga*
	Species	**Thermotoga caldifontis**
	Full Scientific Name (LPSN)	Thermotoga caldifontis Mori et al. 2014

Synonym

"Pseudothermotoga caldifontis"

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21065]

Culture medium

THERMOTOGA PROFUNDA MEDIUM (DSMZ Medium 1539)

[Ref.: #21065]

Culture medium growth

[Ref.: #21065]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21065]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21065]			growth	70 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21065]	Oxygen tolerance	anaerobe
[Ref.: #125438]	Oxygen tolerance	anaerobe Confidence in %90.787

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21065]	Sample type/isolated from	water from a terrestrial hot spring collected from a crack in a concrete wall
[Ref.: #21065]	Geographic location (country and/or sea, region)	Nagano Prefecture, Nakabusa hot spring
[Ref.: #21065]	Country	Japan
[Ref.: #21065]	Country ISO 3 Code	JPN
[Ref.: #21065]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Environmental	#Terrestrial	-
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21065]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermotoga caldifontis AZM44c09	GCA_000828655	complete	GenBank ENA	1408159 tax ID	*
[Ref.: #66792]	Thermotoga caldifontis AZM44c09	1408159.3	complete	PATRIC	1408159 tax ID	*
[Ref.: #66792]	Thermotoga caldifontis AZM44c09	2791355055	complete	JGI IMG/M	1408159 tax ID	*

[Ref.: #21065]

GC-content

51.3 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Thermotoga caldifontis AZM44c09 AZM44c09 NCBI: GCA_000828655.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	70.8	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	yes	90.787	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	95.972	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	79.407	no
[Ref.: #125438]	thermophile	thermophilicⓘ	yes	83.239	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	54.829	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Thermotoga caldifontis AZM44c09 PATRIC: 1408159.3
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	51.4
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	53.3
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	variable	77.5
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	anaerobe	81.9

Availability in culture collections External links

[Ref.: #21065]

Culture collection no.

DSM 23272, NBRC 106116

[Ref.: #88496]

SI-ID 406199

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Towards a congruent reclassification and nomenclature of the thermophilic species of the genus Pseudothermotoga within the order Thermotogales.	Belahbib H, Summers ZM, Fardeau ML, Joseph M, Tamburini C, Dolla A, Ollivier B, Armougom F	Syst Appl Microbiol	10.1016/j.syapm.2018.04.007	2018	*
Phylogeny	Thermotoga profunda sp. nov. and Thermotoga caldifontis sp. nov., anaerobic thermophilic bacteria isolated from terrestrial hot springs.	Mori K, Yamazoe A, Hosoyama A, Ohji S, Fujita N, Ishibashi JI, Kimura H, Suzuki KI	Int J Syst Evol Microbiol	10.1099/ijs.0.060137-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21065

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23272

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88496

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406199.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Thermotoga caldifontis AZM44c09 AZM44c09

Thermotoga caldifontis AZM44c09

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