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Strain identifier

BacDive ID: 24656

Type strain: Yes

Species: Thermotoga caldifontis

Strain Designation: AZM44c09

Strain history: <- K. Mori, NBRC, NITE (Natl. Inst. of Technol. and Evaluation), Japan; AZM44c09 <- K. Mori {2009}

NCBI tax ID(s): 1508419 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21065

BacDive-ID: 24656

DSM-Number: 23272

keywords: genome sequence, Bacteria, anaerobe, thermophilic

description: Thermotoga caldifontis AZM44c09 is an anaerobe, thermophilic bacterium that was isolated from water from a terrestrial hot spring collected from a crack in a concrete wall.

NCBI tax id

  • NCBI tax id: 1508419
  • Matching level: species

strain history: <- K. Mori, NBRC, NITE (Natl. Inst. of Technol. and Evaluation), Japan; AZM44c09 <- K. Mori {2009}

doi: 10.13145/bacdive24656.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/thermotogota
  • domain: Bacteria
  • phylum: Thermotogota
  • class: Thermotogae
  • order: Thermotogales
  • family: Thermotogaceae
  • genus: Thermotoga
  • species: Thermotoga caldifontis
  • full scientific name: Thermotoga caldifontis Mori et al. 2014
  • synonyms

    • @ref: 20215
    • synonym: Pseudothermotoga caldifontis

@ref: 21065

domain: Bacteria

phylum: Thermotogae

class: Thermotogae

order: Thermotogales

family: Thermotogaceae

genus: Thermotoga

species: Thermotoga caldifontis

full scientific name: Thermotoga caldifontis Mori et al. 2014

strain designation: AZM44c09

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 21065
  • name: THERMOTOGA PROFUNDA MEDIUM (DSMZ Medium 1539)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1539
  • composition: Name: THERMOTOGA PROFUNDA MEDIUM (DSMZ Medium 1539) Composition: Na2CO3 1.97824 g/l D-Glucose 1.97824 g/l Yeast extract 0.98912 g/l Na2S x 9 H2O 0.296736 g/l L-Cysteine HCl x H2O 0.296736 g/l NH4Cl 0.24728 g/l MgSO4 x 7 H2O 0.24728 g/l Nitrilotriacetic acid 0.126607 g/l KH2PO4 0.0890208 g/l K2HPO4 0.049456 g/l FeCl2 x 4 H2O 0.0098912 g/l NaCl 0.0098912 g/l CaCl2 x 2 H2O 0.00098912 g/l MnCl2 x 4 H2O 0.00098912 g/l ZnCl2 0.00098912 g/l NiCl2 x 6 H2O 0.00098912 g/l Sodium resazurin 0.00049456 g/l Na2WO4 x 2 H2O 0.000395648 g/l Na2SeO3 x 5 H2O 0.000296736 g/l CoCl2 x 6 H2O 0.000296736 g/l Na2MoO4 x 2 H2O 0.000296736 g/l CuCl2 0.000197824 g/l H3BO3 9.8912e-05 g/l Pyridoxine hydrochloride 9.8912e-05 g/l p-Aminobenzoic acid 4.9456e-05 g/l Calcium D-(+)-pantothenate 4.9456e-05 g/l Nicotinic acid 4.9456e-05 g/l Riboflavin 4.9456e-05 g/l Thiamine HCl 4.9456e-05 g/l (DL)-alpha-Lipoic acid 4.9456e-05 g/l Biotin 1.97824e-05 g/l Folic acid 1.97824e-05 g/l Vitamin B12 9.8912e-07 g/l Distilled water

culture temp

  • @ref: 21065
  • growth: positive
  • type: growth
  • temperature: 70
  • range: thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 21065
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 21065
  • sample type: water from a terrestrial hot spring collected from a crack in a concrete wall
  • geographic location: Nagano Prefecture, Nakabusa hot spring
  • country: Japan
  • origin.country: JPN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Thermal spring
#Environmental#Terrestrial
#Condition#Thermophilic (>45°C)

Safety information

risk assessment

  • @ref: 21065
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Thermotoga caldifontis AZM44c09 AZM44c09GCA_000828655completencbi1408159
66792Thermotoga caldifontis AZM44c091408159.3completepatric1408159
66792Thermotoga caldifontis AZM44c092791355055completeimg1408159

GC content

  • @ref: 21065
  • GC-content: 51.3
  • method: sequence analysis

External links

@ref: 21065

culture collection no.: DSM 23272, NBRC 106116

straininfo link

@refpassport
20218http://www.straininfo.net/strains/896713
20218http://www.straininfo.net/strains/896712

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24676729Thermotoga profunda sp. nov. and Thermotoga caldifontis sp. nov., anaerobic thermophilic bacteria isolated from terrestrial hot springs.Mori K, Yamazoe A, Hosoyama A, Ohji S, Fujita N, Ishibashi JI, Kimura H, Suzuki KIInt J Syst Evol Microbiol10.1099/ijs.0.060137-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gram-Negative Anaerobic Straight, Curved, and Helical Rods/*classification/genetics/isolation & purification, Hot Springs/*microbiology, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny29801938Towards a congruent reclassification and nomenclature of the thermophilic species of the genus Pseudothermotoga within the order Thermotogales.Belahbib H, Summers ZM, Fardeau ML, Joseph M, Tamburini C, Dolla A, Ollivier B, Armougom FSyst Appl Microbiol10.1016/j.syapm.2018.04.0072018Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Gram-Negative Anaerobic Straight, Curved, and Helical Rods/*classification/genetics, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, TemperatureTranscriptome

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
21065Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-23272Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23272)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes