Name: Actinomadura xylanilytica BK147
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24654

Type strain:

Species: Actinomadura xylanilytica

Strain Designation: BK147

Culture col. no.: DSM 46742, KACC 20919, NCIMB 14771, NRRL B-24852, JCM 32746, NBRC 109779

Strain history: KACC 20919 <-- B.-Y. Kim; Univ. of Newcastle, UK; BK147.

NCBI tax ID(s): 887459 (species)

SI-ID 402369

DSM 46742

Section

Actinomadura xylanilytica BK147 is an aerobe, mesophilic, Gram-positive bacterium that builds an aerial mycelium and was isolated from hay meadow plot 6 soil.

Gram-positive
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Thermomonosporaceae*
	Genus	*Actinomadura*
	Species	**Actinomadura xylanilytica**
	Full Scientific Name (LPSN)	Actinomadura xylanilytica Zucchi et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30698]	Gram stain	positive

[Ref.: #30698]	Motility	no

[Ref.: #69470]	Colony color	Colourless
[Ref.: #69470]	Cultivation medium used	ISP 4

[Ref.: #69470]	Colony color	Grey white (9002)
[Ref.: #69470]	Cultivation medium used	ISP 5

[Ref.: #69470]	Colony color	Light ivory (1015)
[Ref.: #69470]	Cultivation medium used	ISP 3

[Ref.: #69470]	Colony color	Light ivory (1015)
[Ref.: #69470]	Cultivation medium used	ISP 6

[Ref.: #69470]	Colony color	Light ivory (1015)
[Ref.: #69470]	Cultivation medium used	ISP 7

[Ref.: #69470]	Colony color	Light ivory (1015), khaki grey (7008)
[Ref.: #69470]	Cultivation medium used	suter with tyrosine

[Ref.: #69470]	Colony color	Oyster white (1013), khaki grey (7008)
[Ref.: #69470]	Cultivation medium used	suter without tyrosine

[Ref.: #69470]	Colony color	Silk grey (7044)
[Ref.: #69470]	Cultivation medium used	ISP 2

[Ref.: #30698]	Pigment production	yes
[Ref.: #69470]	Pigment production	no
[Ref.: #69470]	Pigment name	Melanin
[Ref.: #69470]	Pigment production	yes
[Ref.: #69470]	Pigmentation color	Ivory (1014), green beige (1000)
[Ref.: #69470]	Pigment name	soluble pigment

[Ref.: #69470]	Multicellular complex forming ability	yes
[Ref.: #69470]	Multicellular complex name	Aerial mycelium
[Ref.: #69470]	Multicellular complex color	Signal white (9003)
[Ref.: #69470]	Medium Name (multicellularity)	ISP 2

[Ref.: #69470]	Multicellular complex forming ability	yes
[Ref.: #69470]	Multicellular complex name	Aerial mycelium
[Ref.: #69470]	Multicellular complex color	Traffic white (9016)
[Ref.: #69470]	Medium Name (multicellularity)	ISP 3

[Ref.: #69470]	Multicellular complex forming ability	no
[Ref.: #69470]	Multicellular complex name	Aerial mycelium
[Ref.: #69470]	Medium Name (multicellularity)	ISP 4

[Ref.: #69470]	Multicellular complex forming ability	yes
[Ref.: #69470]	Multicellular complex name	Aerial mycelium
[Ref.: #69470]	Multicellular complex color	Signal white (9003)
[Ref.: #69470]	Medium Name (multicellularity)	ISP 5

[Ref.: #69470]	Multicellular complex forming ability	no
[Ref.: #69470]	Multicellular complex name	Aerial mycelium
[Ref.: #69470]	Medium Name (multicellularity)	ISP 6

[Ref.: #69470]	Multicellular complex forming ability	yes
[Ref.: #69470]	Multicellular complex name	Aerial mycelium
[Ref.: #69470]	Multicellular complex color	Signal white (9003)
[Ref.: #69470]	Medium Name (multicellularity)	ISP 7

[Ref.: #69470]	Multicellular complex forming ability	no
[Ref.: #69470]	Multicellular complex name	Aerial mycelium
[Ref.: #69470]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69470]	Multicellular complex forming ability	no
[Ref.: #69470]	Multicellular complex name	Aerial mycelium
[Ref.: #69470]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

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Caption:

Medium 553 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #21146]	growth	28 °C
[Ref.: #30698]	growth	10-37 °C
[Ref.: #30698]	optimum	23.5 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #21146]	Temperature range	mesophilic
[Ref.: #30698]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30698]			optimum	7
[Ref.: #30698]			growth	05-09

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

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Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69470]		NaCl		growth	0-2.5	%

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₈), MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69470]	arabinose ChEBI	-	growth
[Ref.: #69470]	cellulose ChEBI	+/-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30698]	esculin ChEBI	+	hydrolysis
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69470]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69470]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69470]	inositol ChEBI	+/-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30698]	maltose ChEBI	+	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69470]	mannose ChEBI	+	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69470]	raffinose ChEBI	-	growth
[Ref.: #69470]	rhamnose ChEBI	+/-	growth
[Ref.: #69470]	sucrose ChEBI	+/-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69470]	xylose ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #30698]	gelatinase	+
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69470]	3963	-	-	-	+	-	-	-	-	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69470]	6147	not determinedn.d.	+	+/-	+/-	-	+	+	+/-	-	-	+	+	-	+/-	-	+/-	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21146]	Sample type/isolated from	hay meadow plot 6 soil
[Ref.: #21146]	Geographic location (country and/or sea, region)	Northumberland, Cockle Park Experimental Farm
[Ref.: #21146]	Country	United Kingdom
[Ref.: #21146]	Country ISO 3 Code	GBR
[Ref.: #21146]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Hay meadow plot 6 soil at Cockle Park Experimental Farm
[Ref.: #67770]	Geographic location (country and/or sea, region)	Northumberland
[Ref.: #67770]	Country	United Kingdom
[Ref.: #67770]	Country ISO 3 Code	GBR
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Meadow
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21146]	Actinomadura xylanilytica partial 16S rRNA gene, type strain BK147T	FR692101	1454	ENA	887459 tax ID

Availability in culture collections External links

[Ref.: #21146]

Culture collection no.

DSM 46742, KACC 20919, NCIMB 14771, NRRL B-24852, JCM 32746, NBRC 109779

[Ref.: #88494]

SI-ID 402369

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomadura xylanilytica sp. nov., an actinomycete isolated from soil.	Zucchi TD, Kim BY, Bonda ANV, Goodfellow M	Int J Syst Evol Microbiol	10.1099/ijs.0.042325-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21146

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46742

#30698

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27029 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69470

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#88494

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402369.1 )

#27029

IJSEM 576 2013 ( DOI 10.1099/ijs.0.042325-0 , PubMed 22523172 )

* These data were automatically processed and therefore are not curated

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