Actinomadura xylanilytica (DSM 46742, KACC 20919, NCIMB 14771)

Name: Actinomadura xylanilytica (DSM 46742, KACC 20919, NCIMB 14771)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24654

Type strain

Strain Designation BK147

Culture col. no. DSM 46742 KACC 20919 NCIMB 14771 NRRL B-24852 BK147 2 more

NCBI tax ID(s) 887459

Special Collections DSMZ JCM Wink compendium Literature strains

History DSMZ <- NRRL; NRRL B-24852 JCM <-- KACC 20919 <-- B.-Y. Kim; Univ. of Newcastle, UK; BK147.

Links

Actinomadura xylanilytica BK147 is an aerobe, Gram-positive bacterium that builds an aerial mycelium and was isolated from hay meadow plot 6 soil.

Gram-positive aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 402369

NBRC 109779,JCM 32746,NCIMB 14771,DSM 46742

@ref 20215

Last LPSN update 2026-05-29 08:30:39

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Thermomonosporaceae

Genus Actinomadura

Species Actinomadura xylanilytica

Full scientific name Actinomadura xylanilytica Zucchi et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Motility
30698	positive

Colony morphology

@ref	Colony color	Medium used
69470	Colourless	ISP 4
69470	Grey white (9002)	ISP 5
69470	Light ivory (1015)	ISP 3
69470	Light ivory (1015)	ISP 6
69470	Light ivory (1015)	ISP 7
69470	Light ivory (1015), khaki grey (7008)	suter with tyrosine
69470	Oyster white (1013), khaki grey (7008)	suter without tyrosine
69470	Silk grey (7044)	ISP 2

Multicellular morphology

@ref	Complex name	Complex color	Medium name
69470	Aerial mycelium	Signal white (9003)	ISP 2
69470	Aerial mycelium	Traffic white (9016)	ISP 3
69470	Aerial mycelium		ISP 4
69470	Aerial mycelium	Signal white (9003)	ISP 5
69470	Aerial mycelium		ISP 6
69470	Aerial mycelium	Signal white (9003)	ISP 7
69470	Aerial mycelium		suter with tyrosine
69470	Aerial mycelium		suter without tyrosine

Pigmentation

@ref	Color	Name
30698
69470		melanin pigment
69470	Ivory (1014), green beige (1000)	soluble pigment

Multimedia

@ref:	21146
multimedia content:	DSM_46742.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_46742.jpg
caption:	Medium 553 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21146	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
21146	GPHF-MEDIUM (DSMZ Medium 553)		Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
21146	positive	growth	28
30698	positive	growth	10-37
30698	positive	optimum	23.5
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
30698	positive	optimum	7
30698	positive	growth	05-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

30698

Oxygen toleranceaerobe

Spore formation

30698

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69470	NaCl	positive	growth	0-2.5 %

Observation

67770

Observationquinones: MK-9(H₆), MK-9(H₈), MK-9(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69470	22599 ChEBI	arabinose	-	growth
69470	62968 ChEBI	cellulose	+/-	growth
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
30698	4853 ChEBI	esculin	+	hydrolysis
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
69470	28757 ChEBI	fructose	+	growth
68379	5291 ChEBI	gelatin	+	hydrolysis	from API Coryne
69470	17234 ChEBI	glucose	+	growth
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
30698	17306 ChEBI	maltose	+	carbon source
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
69470	37684 ChEBI	mannose	+	growth
69470	17268 ChEBI	myo-inositol	+/-	growth
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
69470	16634 ChEBI	raffinose	-	growth
69470	26546 ChEBI	rhamnose	+/-	growth
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
69470	17992 ChEBI	sucrose	+/-	growth
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
69470	18222 ChEBI	xylose	-	growth

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	+	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
30698	gelatinase	+
68379	gelatinase	+		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68379	urease	-	3.5.1.5	from API Coryne
68382	valine arylamidase	+		from API zym

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69470	-	-	-	+	-	-	-	-	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69470	not determinedn.d.	+	+/-	+/-	-	+	+	+/-	-	-	+	+	-	+/-	-	+/-	+	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Meadow
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
21146	hay meadow plot 6 soil	Northumberland, Cockle Park Experimental Farm	United Kingdom	GBR	Europe
67770	Hay meadow plot 6 soil at Cockle Park Experimental Farm	Northumberland	United Kingdom	GBR	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21146	1	Risk group (German classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21146	Actinomadura xylanilytica partial 16S rRNA gene, type strain BK147T	FR692101	1454		887459

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomadura xylanilytica sp. nov., an actinomycete isolated from soil.	Zucchi TD, Kim BY, Bonda ANV, Goodfellow M	Int J Syst Evol Microbiol	10.1099/ijs.0.042325-0	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21146	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46742
#27029	IJSEM 576 2013 ( DOI 10.1099/ijs.0.042325-0 , PubMed 22523172 )
#30698	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27029
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69470	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinomadura xylanilytica (DSM 46742, KACC 20919, NCIMB 14771)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

Genome-based predictions

Literature

Literature

References

BacDive

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