Name: Saccharopolyspora cavernae DSM 45825
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24453

Type strain:

Species: Saccharopolyspora cavernae

Culture col. no.: DSM 45825, CCTCC AA 2012022, YIM C01235

Strain history: <- S.-K. Tang, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; YIM C01235 <- J. Cheng, Yunnan University,China

NCBI tax ID(s): 1387985 (species)

SI-ID 397352

DSM 45825

Special Collections

DSMZ

Section

Saccharopolyspora cavernae DSM 45825 is a bacterium that was isolated from cave-wall soil.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Saccharopolyspora*
	Species	**Saccharopolyspora cavernae**
	Full Scientific Name (LPSN)	Saccharopolyspora cavernae Cheng et al. 2014

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20796]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #20796]

Culture medium growth

[Ref.: #20796]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20796]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20796]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20796]	Sample type/isolated from	cave-wall soil
[Ref.: #20796]	Geographic location (country and/or sea, region)	Yunnan, Swallow Cave (E103°03.099' N23°38.188)
[Ref.: #20796]	Country	China
[Ref.: #20796]	Country ISO 3 Code	CHN
[Ref.: #20796]	Continent	Asia
[Ref.: #20796]	Geographic location	23.6365°/103.0520°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Geologic
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF177334 (>99% sequence identity) for Saccharopolyspora cavernae subclade from Microbeatlas

Aquatic Samples	10
Soil Samples	84
Animal Samples	377
Plant Samples	2
Total Samples	473

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20796]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20796]	Saccharopolyspora cavernae strain YIM C01235 16S ribosomal RNA gene, partial sequence	KF177334	1544	GenBank ENA	1387985 tax ID

[Ref.: #20796]

GC-content

69.1 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #20796]

Culture collection no.

DSM 45825, CCTCC AA 2012022, YIM C01235

[Ref.: #88328]

SI-ID 397352

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharopolyspora cavernae sp. nov., a novel actinomycete isolated from the Swallow Cave in Yunnan, south-west China.	Cheng J, Zhang YG, Chen W, Li L, Zhang DF, Wang HF, Lu XH, Duan YQ, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-013-9996-z	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20796

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45825

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88328

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397352.1 )

* These data were automatically processed and therefore are not curated

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