Saccharopolyspora dendranthemae (DSM 46699, KCTC 19889, NBRC 108675)

Name: Saccharopolyspora dendranthemae (DSM 46699, KCTC 19889, NBRC 108675)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24454

Type strain

Culture col. no. DSM 46699 KCTC 19889 NBRC 108675 KLBMP 1305

NCBI tax ID(s) 1181886

Special Collections DSMZ KCTC

History <- KCTC; KCTC 19889 <- S. Qin; KLBMP 1305 <- S Qin, Xuzhou Normal Univ., China

Links

Saccharopolyspora dendranthemae DSM 46699 is an aerobe, Gram-positive bacterium that was isolated from surface-sterilized stems of a coastal salt marsh plant Dendranthema indicum .

Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 402781

KCTC 19889,NBRC 108675,DSM 46699

@ref 20215

Last LPSN update 2026-02-09 11:23:58

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Saccharopolyspora

Species Saccharopolyspora dendranthemae

Full scientific name Saccharopolyspora dendranthemae Zhang et al. 2014

BacDive ID	Other strains from **Saccharopolyspora dendranthemae** (2)	Type strain
176936	S. dendranthemae ADC46, DSM 114082
176937	S. dendranthemae ANHC46, ADC46, DSM 116600

Morphology

Cell morphology

@ref	Gram stain	Confidence
67771	positive
125438	positive	90.791
125439	positive	99.7

Multimedia

@ref:	20797
multimedia content:	DSM_46699.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_46699.jpg
caption:	Medium 553 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20797	GPHF-MEDIUM (DSMZ Medium 553)		Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
20797	positive	growth	28
67771	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67771	aerobe
125439	obligate aerobe	99

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Stem (Branch)
#Host Body-Site	#Plant	#Sterilized plant part

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
20797	surface-sterilized stems of a coastal salt marsh plant Dendranthema indicum (Linn)	Jiangsu Province, Nantong	China	CHN	Asia
67771	From plant	Jiangsu	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence JQ819260 (>99% sequence identity) for Saccharopolyspora from Microbeatlas

Aquatic Samples	16
Soil Samples	97
Animal Samples	186
Plant Samples	20
Total Samples	319

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20797	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM782995v1 assembly for Saccharopolyspora dendranthemae DSM 46699	contig	GCA_007829955	1181886.3	2818991479	1181886	75.08

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20797	Saccharopolyspora dendranthemae strain KLBMP 1305 16S ribosomal RNA gene, partial sequence	JQ819260	1445		1181886

GC content

20797

GC-content (mol%)68.7

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Saccharopolyspora dendranthemae DSM 46699
NCBI: GCA_007829955

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	75.70	no
125439	motility	BacteriaNetⓘ	no	88.70	no
125439	gram_stain	BacteriaNetⓘ	positive	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Saccharopolyspora dendranthemae strain DSM 46699
PATRIC: 1181886.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.79	yes
125438	anaerobic	anaerobicⓘ	no	96.11	yes
125438	spore-forming	spore-formingⓘ	yes	85.29	no
125438	aerobic	aerobicⓘ	yes	88.05	yes
125438	thermophilic	thermophileⓘ	no	97.14	yes
125438	flagellated	motile2+ⓘ	no	86.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Biotechnology	Novel endophytic actinomycetes species Streptomyces panacea of Panax sokpayensis produce antimicrobial compounds against multidrug resistant Staphylococcus aureus	Rai S, Singh L, Liriina K, Jeyaram K, Parija T, Sahoo D.	Sci Rep		2025
Genetics	Comprehensive genome analysis of two novel Saccharopolyspora strains-Saccharopolyspora montiporae sp. nov. and Saccharopolyspora galaxeae sp. nov. isolated from stony corals in Hainan.	Xie Y, Li F, Xie Q, Kong F, Xu Y, Ma Q, Wu W, Huang D, Xie X, Zhou S, Zhao Y, Huang X.	Front Microbiol	10.3389/fmicb.2024.1432042	2024
Phylogeny	Saccharopolyspora rhizosphaerae sp. nov., an actinomycete isolated from rhizosphere soil in Thailand.	Intra B, Euanorasetr J, Take A, Inahashi Y, Mori M, Panbangred W, Matsumoto A	Int J Syst Evol Microbiol	10.1099/ijsem.0.003307	2019
Phylogeny	Saccharopolyspora spongiae sp. nov., a novel actinomycete isolated from the marine sponge Scopalina ruetzleri (Wiedenmayer, 1977).	Souza DT, Silva FSPD, Silva LJD, Crevelin EJ, Moraes LAB, Zucchi TD, Melo IS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001912	2017
Phylogeny	Saccharopolyspora griseoalba sp. nov., a novel actinomycete isolated from the Dead Sea.	Jiang Y, Wei X, Chen X, Jiang Y, Xue Q, Lai H, Jiang C	Antonie Van Leeuwenhoek	10.1007/s10482-016-0763-9	2016
Phylogeny	Saccharopolyspora dendranthemae sp. nov. a halotolerant endophytic actinomycete isolated from a coastal salt marsh plant in Jiangsu, China.	Zhang YJ, Zhang WD, Qin S, Bian GK, Xing K, Li YF, Cao CL, Jiang JH	Antonie Van Leeuwenhoek	10.1007/s10482-013-9917-1	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20797	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46699
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Saccharopolyspora dendranthemae (DSM 46699, KCTC 19889, NBRC 108675)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_007829955

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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