General

@ref: 20796

BacDive-ID: 24453

DSM-Number: 45825

keywords: 16S sequence, Bacteria, mesophilic

description: Saccharopolyspora cavernae DSM 45825 is a mesophilic bacterium that was isolated from cave-wall soil.

NCBI tax id

• NCBI tax id: 1387985
• Matching level: species

strain history

• @ref: 20796
• history: <- S.-K. Tang, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; YIM C01235 <- J. Cheng, Yunnan University,China

doi: 10.13145/bacdive24453.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/actinomycetota
• domain: Bacteria
• phylum: Actinomycetota
• class: Actinomycetes
• order: Pseudonocardiales
• family: Pseudonocardiaceae
• genus: Saccharopolyspora
• species: Saccharopolyspora cavernae
• full scientific name: Saccharopolyspora cavernae Cheng et al. 2014

@ref: 20796

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Saccharopolyspora

species: Saccharopolyspora cavernae

full scientific name: Saccharopolyspora cavernae Cheng et al. 2014

type strain: yes

Culture and growth conditions

culture medium

• @ref: 20796
• name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
• growth: yes
• link: https://mediadive.dsmz.de/medium/65
• composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

• @ref: 20796
• growth: positive
• type: growth
• temperature: 28
• range: mesophilic

Isolation, sampling and environmental information

isolation

• @ref: 20796
• sample type: cave-wall soil
• geographic location: Yunnan, Swallow Cave (E103°03.099' N23°38.188)
• country: China
• origin.country: CHN
• continent: Asia
• latitude: 23.6365
• longitude: 103.052

isolation source categories

taxonmaps

• @ref: 69479
• File name: preview.99_127706.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_18046;97_26666;98_33927;99_127706&stattab=map
• Last taxonomy: Saccharopolyspora cavernae subclade
• 16S sequence: KF177334
• Sequence Identity:
• Total samples: 473
• soil counts: 84
• aquatic counts: 10
• animal counts: 377
• plant counts: 2

Safety information

risk assessment

• @ref: 20796
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

• @ref: 20796
• description: Saccharopolyspora cavernae strain YIM C01235 16S ribosomal RNA gene, partial sequence
• accession: KF177334
• length: 1544
• database: ena
• NCBI tax ID: 1387985

GC content

• @ref: 20796
• GC-content: 69.1
• method: high performance liquid chromatography (HPLC)

External links

@ref: 20796

culture collection no.: DSM 45825, CCTCC AA 2012022, YIM C01235

straininfo link

• @ref: 88328
• straininfo: 397352

literature

• topic: Phylogeny
• Pubmed-ID: 23955700
• title: Saccharopolyspora cavernae sp. nov., a novel actinomycete isolated from the Swallow Cave in Yunnan, south-west China.
• authors: Cheng J, Zhang YG, Chen W, Li L, Zhang DF, Wang HF, Lu XH, Duan YQ, Li WJ
• journal: Antonie Van Leeuwenhoek
• DOI: 10.1007/s10482-013-9996-z
• year: 2013
• mesh: Aerobiosis, Amino Acids/analysis, Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, Carbon/metabolism, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Nitrogen/metabolism, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Saccharopolyspora/*classification/genetics/*isolation & purification, Sequence Analysis, DNA, Sodium Chloride/metabolism, Soil Microbiology, Temperature
• topic2: Metabolism

Reference