Name: Salinifilum ghardaiense H53
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24451

Type strain:

Species: Salinifilum ghardaiense

Strain Designation: H53

Culture col. no.: DSM 45606, CCUG 63370, CECT 8304

Strain history: <- N. Sabaou. LPBVB, Kouba, Algeria; H53 <- A. Meklat

NCBI tax ID(s): 1293032 (species)

Special Collections

Section

Salinifilum ghardaiense H53 is an aerobe, halophilic, Gram-positive bacterium that was isolated from non-saline Saharan soil.

Gram-positive
aerobe
halophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Salinifilum*
	Species	**Salinifilum ghardaiense**
	Full Scientific Name (LPSN)	Salinifilum ghardaiense corrig. (Meklat et al. 2014) Moshtaghi Nikou et al. 2017

	Synonym	Salinifilum ghardaiensis
	Synonym	Saccharopolyspora ghardaiensis

Information on morphological and physiological properties Morphology

[Ref.: #43930]	Gram stain	positive

[Ref.: #62972]

Incubation period

21-25 days

Multimedia content

[Ref.: #20794]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20794]

Culture medium

CM + YE MEDIUM (DSMZ Medium 549)

[Ref.: #20794]

Culture medium growth

[Ref.: #20794]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20794]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20794]			growth	28 °C
[Ref.: #62972]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43930]	Oxygen tolerance	aerobe
[Ref.: #62972]	Oxygen tolerance	aerobe

[Ref.: #43930]

Halophily / tolerance level

halophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20794]	Sample type/isolated from	non-saline Saharan soil
[Ref.: #20794]	Geographic location (country and/or sea, region)	Ghardaia province, Béni-isguen (Mzab), Chaâbet Ntissa (32°27'52''N, 3°40'19''E)
[Ref.: #20794]	Country	Algeria
[Ref.: #20794]	Country ISO 3 Code	DZA
[Ref.: #20794]	Continent	Africa
[Ref.: #20794]	Geographic location	32.4644°/3.6719°

[Ref.: #43930]	Sample type/isolated from	Soil, Ghardaia, Algeria
[Ref.: #43930]	Geographic location (country and/or sea, region)	Ghardaia
[Ref.: #43930]	Country	Algeria
[Ref.: #43930]	Country ISO 3 Code	DZA
[Ref.: #43930]	Continent	Africa

[Ref.: #62972]	Sample type/isolated from	Soil,Sahara desert
[Ref.: #62972]	Sampling date	2006
[Ref.: #62972]	Geographic location (country and/or sea, region)	south
[Ref.: #62972]	Country	Algeria
[Ref.: #62972]	Country ISO 3 Code	DZA
[Ref.: #62972]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC427277 (>99% sequence identity) for Salinifilum from Microbeatlas

Aquatic Samples	45
Soil Samples	74
Animal Samples	455
Plant Samples	14
Total Samples	588

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20794]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20794]	Salinifilum ghardaiensis strain DSM 45606 16S ribosomal RNA gene, partial sequence	KC427277	1491	GenBank ENA	1293032 tax ID

[Ref.: #20794]

GC-content

72.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #20794]

Culture collection no.

DSM 45606, CCUG 63370, CECT 8304

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salinifilum gen. nov., with description of Salinifilum proteinilyticum sp. nov., an extremely halophilic actinomycete isolated from Meighan wetland, Iran, and reclassification of Saccharopolyspora aidingensis as Salinifilum aidingensis comb. nov. and Saccharopolyspora ghardaiensis as Salinifilum ghardaiensis comb. nov.	Moshtaghi Nikou M, Ramezani M, Harirchi S, Makzoom S, Amoozegar MA, Shahzadeh Fazeli SA, Schumann P, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijsem.0.002286	2017	*
Phylogeny	Bounagaea algeriensis gen. nov., sp. nov., an extremely halophilic actinobacterium isolated from a Saharan soil of Algeria.	Meklat A, Bouras N, Mokrane S, Zitouni A, Schumann P, Sproer C, Klenk HP, Sabaou N	Antonie Van Leeuwenhoek	10.1007/s10482-015-0500-9	2015	*
Phylogeny	Saccharopolyspora ghardaiensis sp. nov., an extremely halophilic actinomycete isolated from Algerian Saharan soil.	Meklat A, Bouras N, Zitouni A, Sabaou N, Mathieu F, Schumann P, Sproer C, Klenk HP	J Antibiot (Tokyo)	10.1038/ja.2013.136	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20794

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45606

#43930

Mahdi Moshtaghi Nikou, Mohaddaseh Ramezani, Sharareh Harirchi, Somayyeh Makzoom, Mohammad Ali Amoozegar, Seyed Abolhassan Shahzadeh Fazeli, Peter Schumann, Antonio Ventosa: Salinifilum gen. nov., with description of Salinifilum proteinilyticum sp. nov., an extremely halophilic actinomycete isolated from Meighan wetland, Iran, and reclassification of Saccharopolyspora aidingensis as Salinifilum aidingensis comb. nov. and Saccharopolyspora ghardaiensis as Salinifilum ghardaiensis comb. nov. IJSEM 67: 4221 - 4227 2017 ( DOI 10.1099/ijsem.0.002286 , PubMed 28920832 )

#62972 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 63370

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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