Strain identifier
BacDive ID: 24451
Type strain: 
Species: Salinifilum ghardaiense
Strain Designation: H53
Strain history: <- N. Sabaou. LPBVB, Kouba, Algeria; H53 <- A. Meklat
NCBI tax ID(s): 1293032 (species)
version 9 (current version)
General
@ref: 20794
BacDive-ID: 24451
DSM-Number: 45606
keywords: 16S sequence, Bacteria, aerobe, halophilic, Gram-positive
description: Salinifilum ghardaiense H53 is an aerobe, halophilic, Gram-positive bacterium that was isolated from non-saline Saharan soil.
NCBI tax id
- NCBI tax id: 1293032
- Matching level: species
strain history
- @ref: 20794
- history: <- N. Sabaou. LPBVB, Kouba, Algeria; H53 <- A. Meklat
doi: 10.13145/bacdive24451.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Salinifilum
- species: Salinifilum ghardaiense
- full scientific name: Salinifilum ghardaiense corrig. (Meklat et al. 2014) Moshtaghi Nikou et al. 2017
synonyms
@ref synonym 20215 Salinifilum ghardaiensis 20215 Saccharopolyspora ghardaiensis
@ref: 20794
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Salinifilum
species: Salinifilum ghardaiensis
full scientific name: Salinifilum ghardaiensis (Meklat et al. 2014) Moshtaghi Nikou et al. 2017
strain designation: H53
type strain: yes
Morphology
cell morphology
- @ref: 43930
- gram stain: positive
colony morphology
- @ref: 62972
- incubation period: 21-25 days
multimedia
- @ref: 20794
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45606.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 20794
- name: CM + YE MEDIUM (DSMZ Medium 549)
- growth: yes
- link: https://mediadive.dsmz.de/medium/549
- composition: Name: CM + YE MEDIUM (DSMZ Medium 549) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Casamino acids 7.5 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l FeSO4 x 7 H2O 0.01 g/l HCl 3.646e-05 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 20794 | positive | growth | 28 |
| 62972 | positive | growth | 30 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 43930 | aerobe |
| 62972 | aerobe |
halophily
- @ref: 43930
- halophily level: halophilic
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude | sampling date |
|---|---|---|---|---|---|---|---|---|
| 20794 | non-saline Saharan soil | Ghardaia province, Béni-isguen (Mzab), Chaâbet Ntissa (32°27'52''N, 3°40'19''E) | Algeria | DZA | Africa | 32.4644 | 3.6719 | |
| 43930 | Soil, Ghardaia, Algeria | Ghardaia | Algeria | DZA | Africa | |||
| 62972 | Soil,Sahara desert | south | Algeria | DZA | Africa | 2006 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Desert |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_62533.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6153;96_27325;97_34356;98_44287;99_62533&stattab=map
- Last taxonomy: Salinifilum
- 16S sequence: KC427277
- Sequence Identity:
- Total samples: 588
- soil counts: 74
- aquatic counts: 45
- animal counts: 455
- plant counts: 14
Safety information
risk assessment
- @ref: 20794
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20794
- description: Salinifilum ghardaiensis strain DSM 45606 16S ribosomal RNA gene, partial sequence
- accession: KC427277
- length: 1491
- database: nuccore
- NCBI tax ID: 1293032
GC content
- @ref: 20794
- GC-content: 72.6
- method: high performance liquid chromatography (HPLC)
External links
@ref: 20794
culture collection no.: DSM 45606, CCUG 63370, CECT 8304
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24346634 | Saccharopolyspora ghardaiensis sp. nov., an extremely halophilic actinomycete isolated from Algerian Saharan soil. | Meklat A, Bouras N, Zitouni A, Sabaou N, Mathieu F, Schumann P, Sproer C, Klenk HP | J Antibiot (Tokyo) | 10.1038/ja.2013.136 | 2013 | Algeria, Base Sequence, Cell Surface Extensions, Cell Wall/metabolism, Desert Climate, Diaminopimelic Acid/metabolism, Fatty Acids/chemistry/metabolism, Hot Temperature, Hydrogen-Ion Concentration, Molecular Sequence Data, Molecular Structure, Phylogeny, RNA, Bacterial/chemistry/metabolism, RNA, Ribosomal, 16S/chemistry/metabolism, Saccharopolyspora/classification/growth & development/*isolation & purification/physiology, Salinity, Sequence Homology, Nucleic Acid, *Soil Microbiology, Spores, Bacterial/ultrastructure, Vitamin K 2/analogs & derivatives/chemistry/metabolism | Metabolism |
| Phylogeny | 26050246 | Bounagaea algeriensis gen. nov., sp. nov., an extremely halophilic actinobacterium isolated from a Saharan soil of Algeria. | Meklat A, Bouras N, Mokrane S, Zitouni A, Schumann P, Sproer C, Klenk HP, Sabaou N | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0500-9 | 2015 | Actinobacteria/*classification/genetics/*isolation & purification/physiology, Algeria, Arabinose/analysis, Base Composition, Cell Wall/chemistry, Cluster Analysis, Culture Media/chemistry, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Desert Climate, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Galactose/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Spores, Bacterial/growth & development, Temperature, Vitamin K 2/analysis | Genetics |
| Phylogeny | 28920832 | Salinifilum gen. nov., with description of Salinifilum proteinilyticum sp. nov., an extremely halophilic actinomycete isolated from Meighan wetland, Iran, and reclassification of Saccharopolyspora aidingensis as Salinifilum aidingensis comb. nov. and Saccharopolyspora ghardaiensis as Salinifilum ghardaiensis comb. nov. | Moshtaghi Nikou M, Ramezani M, Harirchi S, Makzoom S, Amoozegar MA, Shahzadeh Fazeli SA, Schumann P, Ventosa A | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002286 | 2017 | Actinobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Halobacteriales/classification, Iran, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Saccharopolyspora/*classification, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, *Wetlands | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 20794 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45606 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45606) | |||
| 43930 | Mahdi Moshtaghi Nikou, Mohaddaseh Ramezani, Sharareh Harirchi, Somayyeh Makzoom, Mohammad Ali Amoozegar, Seyed Abolhassan Shahzadeh Fazeli, Peter Schumann, Antonio Ventosa | Salinifilum gen. nov., with description of Salinifilum proteinilyticum sp. nov., an extremely halophilic actinomycete isolated from Meighan wetland, Iran, and reclassification of Saccharopolyspora aidingensis as Salinifilum aidingensis comb. nov. and Saccharopolyspora ghardaiensis as Salinifilum ghardaiensis comb. nov | 10.1099/ijsem.0.002286 | IJSEM 67: 4221-4227 2017 | 28920832 | |
| 62972 | Curators of the CCUG | https://www.ccug.se/strain?id=63370 | Culture Collection University of Gothenburg (CCUG) (CCUG 63370) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |