Name: Halochromatium glycolicum SL 3201
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2440

Type strain:

Species: Halochromatium glycolicum

Strain Designation: SL 3201, 6410

Culture col. no.: DSM 11080, ATCC 700202

Strain history: <- P. Caumette, SL 3201

NCBI tax ID(s): 85075 (species)

SI-ID 45410

ATCC 700202, DSM 11080

Special Collections

DSMZ

Section

Halochromatium glycolicum SL 3201 is an anaerobe, Gram-negative bacterium that was isolated from solar lake .

Gram-negative
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Chromatiaceae*
	Genus	*Halochromatium*
	Species	**Halochromatium glycolicum**
	Full Scientific Name (LPSN)	Halochromatium glycolicum (Caumette et al. 1997) Imhoff et al. 1998

Synonym

Chromatium glycolicum

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %96.744

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4194]

Culture medium

CHROMATIUM SALEXIGENS MEDIUM (DSMZ Medium 421)

[Ref.: #4194]

Culture medium growth

[Ref.: #4194]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4194]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4194]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4194]

Oxygen tolerance

anaerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %93

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4194]	Sample type/isolated from	solar lake (microbial mat)
[Ref.: #4194]	Geographic location (country and/or sea, region)	Sinai
[Ref.: #4194]	Country	Egypt
[Ref.: #4194]	Country ISO 3 Code	EGY
[Ref.: #4194]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Microbial community	#Microbial mat
#Condition	#Saline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4194]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Halochromatium glycolicum 16S rRNA gene, type strain BN 3201T	X93472	1451	GenBank ENA	85075 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halochromatium glycolicum DSM 11080	GCA_016584085	contig	GenBank ENA	85075 tax ID	*
[Ref.: #66792]	Halochromatium glycolicum strain DSM 11080	85075.5	wgs	PATRIC	85075 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halochromatium glycolicum strain DSM 11080 PATRIC: 85075.5
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	93	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halochromatium glycolicum strain DSM 11080 PATRIC: 85075.5
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.744	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	62.657	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	71.129	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.94	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.744	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	70.735	no

Availability in culture collections External links

[Ref.: #4194]

Culture collection no.

DSM 11080, ATCC 700202

[Ref.: #71987]

SI-ID 45410

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chromatium glycolicum sp. nov., a moderately halophilic purple sulfur bacterium that uses glycolate as substrate	Caumette P, Imhoff JF, Suling J, Matheron R	Arch Microbiol	10.1007/s002030050410	1997	*

References

#4194

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11080

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71987

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45410.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Halochromatium glycolicum in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Halochromatium glycolicum strain DSM 11080

Halochromatium glycolicum strain DSM 11080

Change proposal

Change proposal