Name: Halochromatium salexigens 6310
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2439

Type strain:

Species: Halochromatium salexigens

Strain Designation: 6310

Culture col. no.: DSM 4395, SG 3201

Strain history: <- P. Caumette, SG3201

NCBI tax ID(s): 49447 (species)

SI-ID 47842

DSM 4395, ATCC 49190

Special Collections

DSMZ

Section

Halochromatium salexigens 6310 is an anaerobe, Gram-negative bacterium that was isolated from salt marshes in salinas.

Gram-negative
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Chromatiaceae*
	Genus	*Halochromatium*
	Species	**Halochromatium salexigens**
	Full Scientific Name (LPSN)	Halochromatium salexigens (Caumette et al. 1989) Imhoff et al. 1998

Synonym

Chromatium salexigens

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %96.744

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1555]

Culture medium

CHROMATIUM SALEXIGENS MEDIUM (DSMZ Medium 421)

[Ref.: #1555]

Culture medium growth

[Ref.: #1555]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1555]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1555]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1555]

Oxygen tolerance

anaerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1555]	Sample type/isolated from	salt marshes in salinas
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Salt marsh
#Condition	#Saline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1555]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Halochromatium salexigens partial 16S rRNA gene, type strain 6310T	X98597	1451	GenBank ENA	49447 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halochromatium salexigens DSM 4395	GCA_016653295	scaffold	GenBank ENA	49447 tax ID	*
[Ref.: #66792]	Halochromatium salexigens strain DSM 4395	49447.5	wgs	PATRIC	49447 tax ID	*

[Ref.: #1555]

GC-content

64.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halochromatium salexigens DSM 4395 NCBI: GCA_016653295.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halochromatium salexigens DSM 4395 NCBI: GCA_016653295.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.744	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	74.099	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	74.791	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.596	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	88.015	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	70.268	no

Availability in culture collections External links

[Ref.: #1555]

Culture collection no.

DSM 4395, SG 3201

[Ref.: #71986]

SI-ID 47842

References

#1555

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4395

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71986

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47842.1 )

* These data were automatically processed and therefore are not curated

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Halochromatium salexigens DSM 4395

Halochromatium salexigens DSM 4395

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