Name: Halochromatium salexigens 6310
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2439

Type strain:

Species: Halochromatium salexigens

Strain Designation: 6310

Culture col. no.: DSM 4395, SG 3201

Strain history: <- P. Caumette, SG3201

NCBI tax ID(s): 49447 (species)

SI-ID 47842

DSM 4395, ATCC 49190

Section

Halochromatium salexigens 6310 is an anaerobe, mesophilic, motile bacterium that was isolated from salt marshes in salinas.

motile
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Chromatiaceae*
	Genus	*Halochromatium*
	Species	**Halochromatium salexigens**
	Full Scientific Name (LPSN)	Halochromatium salexigens (Caumette et al. 1989) Imhoff et al. 1998

Synonym

Chromatium salexigens

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %99.259

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1555]

Culture medium

CHROMATIUM SALEXIGENS MEDIUM (DSMZ Medium 421)

[Ref.: #1555]

Culture medium growth

[Ref.: #1555]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1555]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1555]			growth	30 °C

[Ref.: #1555]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1555]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %98.933

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1555]	Sample type/isolated from	salt marshes in salinas
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Salt marsh
#Condition	#Saline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1555]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Halochromatium salexigens partial 16S rRNA gene, type strain 6310T	X98597	1451	ENA	49447 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halochromatium salexigens DSM 4395	GCA_016653295	scaffold	GenBank	49447 tax ID	*
[Ref.: #66792]	Halochromatium salexigens strain DSM 4395	49447.5	wgs	PATRIC	49447 tax ID	*

[Ref.: #1555]

GC-content

64.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halochromatium salexigens DSM 4395 NCBI: GCA_016653295.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halochromatium salexigens DSM 4395 NCBI: GCA_016653295.1
[Ref.: #69480]	flagellated	no	51.212	no
[Ref.: #69480]	gram-positive	no	98.963	no
[Ref.: #69480]	anaerobic	yes	96.956	yes
[Ref.: #69480]	aerobic	no	96.249	no
[Ref.: #69480]	halophile	no	65.946	no
[Ref.: #69480]	spore-forming	no	90.457	no
[Ref.: #69480]	thermophile	no	92.657	yes
[Ref.: #69480]	glucose-util	yes	71.045	no
[Ref.: #69480]	motile	yes	85.651	no
[Ref.: #69480]	glucose-ferment	no	81.504	no

Availability in culture collections External links

[Ref.: #1555]

Culture collection no.

DSM 4395, SG 3201

[Ref.: #71986]

SI-ID 47842

References

#1555

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4395

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71986

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47842.1 )

* These data were automatically processed and therefore are not curated

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Halochromatium salexigens DSM 4395

Halochromatium salexigens DSM 4395

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