Name: Allochromatium renukae JA136
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2438

Type strain:

Species: Allochromatium renukae

Strain Designation: JA136

Culture col. no.: DSM 18713, JCM 14262

Strain history: Ch. Sasikala; Jawaharlal Nehru Technol. Univ., India; JA136.

NCBI tax ID(s): 402883 (species)

SI-ID 323945

DSM 18713, JCM 14262

Special Collections

Section

Allochromatium renukae JA136 is an obligate anaerobe, Gram-negative, motile bacterium that was isolated from brackish water body.

Gram-negative
motile
rod-shaped
obligate anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Chromatiaceae*
	Genus	*Allochromatium*
	Species	**Allochromatium renukae**
	Full Scientific Name (LPSN)	Allochromatium renukae Anil Kumar et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32360]	Gram stain	negative

[Ref.: #32360]	Cell length	4 µm

[Ref.: #32360]	Cell width	2.25 µm

[Ref.: #32360]	Cell shape	rod-shaped

[Ref.: #32360]	Motility	yes

[Ref.: #32360]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #32360]	growth	28-32 °C
[Ref.: #32360]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #32360]			optimum	7.6
[Ref.: #32360]			growth	6.8-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7673]	Oxygen tolerance	obligate anaerobe
[Ref.: #32360]	Oxygen tolerance	anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32360]		NaCl		growth	<4	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32360]	acetate ChEBI	+	carbon source
[Ref.: #32360]	glucose ChEBI	+	carbon source
[Ref.: #32360]	malate ChEBI	+	carbon source
[Ref.: #32360]	pyruvate ChEBI	+	carbon source
[Ref.: #32360]	succinate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7673]	Sample type/isolated from	brackish water body
[Ref.: #7673]	Geographic location (country and/or sea, region)	Kakinada, Chollangi
[Ref.: #7673]	Country	India
[Ref.: #7673]	Country ISO 3 Code	IND
[Ref.: #7673]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Brackish water body at Chollangi
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kakinada
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Brackish
#Environmental	#Aquatic	#Freshwater

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7673]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7673]	Allochromatium renukae 16S rRNA gene, type strain JA136T	AM399029	1439	GenBank ENA	402883 tax ID
[Ref.: #20218]	Allochromatium renukae strain DSM 18713 16S-23S ribosomal RNA intergenic spacer, partial sequence	FJ823969	420	GenBank ENA	402883 tax ID	*

[Ref.: #7673]	GC-content	62.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #32360]	GC-content	62.3 mol%

Availability in culture collections External links

[Ref.: #7673]

Culture collection no.

DSM 18713, JCM 14262

[Ref.: #71985]

SI-ID 323945

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Allochromatium humboldtianum sp. nov., isolated from soft coastal sediments.	Serrano W, Schrubbers J, Amann R, Fischer U	Int J Syst Evol Microbiol	10.1099/ijs.0.000364	2015	*
Phylogeny	Allochromatium renukae sp. nov.	Anil Kumar P, Srinivas TN, Sasikala Ch, Ramana ChV	Int J Syst Evol Microbiol	10.1099/ijs.0.65376-0	2008	*

References

#7673

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18713

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#32360

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28589 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#71985

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID323945.1 )

#28589

IJSEM 404 2008 ( DOI 10.1099/ijs.0.65376-0 , PubMed 18218939 )

* These data were automatically processed and therefore are not curated

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