Name: Halochromatium roseum JA134
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2441

Type strain:

Species: Halochromatium roseum

Strain Designation: JA134

Culture col. no.: DSM 18859, ATCC BAA-1363, JCM 14151, CIP 109733

Strain history: Ch. Sasikala JA134.

NCBI tax ID(s): 391920 (species)

SI-ID 309535

ATCC BAA-1363, DSM 18859, JCM 14151, CIP 109733

Section

Halochromatium roseum JA134 is an anaerobe, Gram-negative, rod-shaped bacterium that was isolated from photoautotrophic enrichments of a sample collected from a marine solar saltpan.

Gram-negative
rod-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Chromatiaceae*
	Genus	*Halochromatium*
	Species	**Halochromatium roseum**
	Full Scientific Name (LPSN)	Halochromatium roseum Anil Kumar et al. 2007

Synonym

"Lamprobacter roseus"

Information on morphological and physiological properties Morphology

[Ref.: #32145]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #32145]	Cell length	4 µm

[Ref.: #32145]	Cell width	2.5 µm

[Ref.: #32145]	Cell shape	rod-shaped

[Ref.: #32145]	Motility	no
[Ref.: #69480]	Motility	yes Confidence in %95.092

[Ref.: #32145]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #32145]	growth	20-35 °C
[Ref.: #32145]	optimum	27 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #32145]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32145]			optimum	7.5
[Ref.: #32145]			growth	07-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32145]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %98.648

[Ref.: #69481]	Ability of spore formation	no Confidence in %95
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32145]		NaCl		growth	1.5-2.5	%
[Ref.: #32145]		NaCl		optimum	2	%

[Ref.: #32145]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32145]	butanol ChEBI	+	carbon source
[Ref.: #32145]	malate ChEBI	+	carbon source
[Ref.: #32145]	pyruvate ChEBI	+	carbon source
[Ref.: #32145]	succinate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7749]	Sample type/isolated from	photoautotrophic enrichments of a sample collected from a marine solar saltpan
[Ref.: #7749]	Geographic location (country and/or sea, region)	Kakinada (16° 54' N 82° 13' E)
[Ref.: #7749]	Country	India
[Ref.: #7749]	Country ISO 3 Code	IND
[Ref.: #7749]	Continent	Asia
[Ref.: #7749]	Geographic location	16.9000°/82.2167°

[Ref.: #67770]	Sample type/isolated from	Saltpan at Kakinada
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	#Lab enrichment
#Environmental	#Aquatic	#Marine
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM283535 (>99% sequence identity) for Halochromatium roseum subclade from Microbeatlas

Aquatic Samples	298
Soil Samples	7
Animal Samples	20
Plant Samples	3
Total Samples	328

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7749]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7749]	Halochromatium roseum partial 16S rRNA gene, strain JA134T	AM283535	1447	ENA	391920 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halochromatium roseum DSM 18859	GCA_016653315	scaffold	GenBank	391920 tax ID	*
[Ref.: #66792]	Halochromatium roseum strain DSM 18859	391920.5	wgs	PATRIC	391920 tax ID	*

[Ref.: #7749]	GC-content	64.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #32145]	GC-content	64 mol%
[Ref.: #67770]	GC-content	64 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halochromatium roseum DSM 18859 NCBI: GCA_016653315.1
[Ref.: #69481]	spore-forming	no	95	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halochromatium roseum DSM 18859 NCBI: GCA_016653315.1
[Ref.: #69480]	flagellated	no	54.942	no
[Ref.: #69480]	gram-positive	no	98.892	yes
[Ref.: #69480]	anaerobic	yes	98.309	yes
[Ref.: #69480]	aerobic	no	96.28	yes
[Ref.: #69480]	halophile	no	85.314	no
[Ref.: #69480]	spore-forming	no	90.991	no
[Ref.: #69480]	thermophile	no	98.581	yes
[Ref.: #69480]	glucose-util	yes	69.886	no
[Ref.: #69480]	motile	yes	80.049	yes
[Ref.: #69480]	glucose-ferment	no	83.843	no

Availability in culture collections External links

[Ref.: #7749]

Culture collection no.

DSM 18859, ATCC BAA-1363, JCM 14151, CIP 109733

[Ref.: #71988]

SI-ID 309535

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halochromatium roseum sp. nov., a non-motile phototrophic gammaproteobacterium with gas vesicles, and emended description of the genus Halochromatium.	Anil Kumar P, Srinivas TNR, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijs.0.65034-0	2007	*

References

#7749

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18859

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32145

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28389 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71988

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID309535.1 )

#28389

IJSEM 2110 2007 ( DOI 10.1099/ijs.0.65034-0 , PubMed 17766881 )

* These data were automatically processed and therefore are not curated

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Halochromatium roseum DSM 18859

Halochromatium roseum DSM 18859

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