Strain identifier
BacDive ID: 2440
Type strain: 
Species: Halochromatium glycolicum
Strain Designation: SL 3201, 6410
Strain history: <- P. Caumette, SL 3201
NCBI tax ID(s): 85075 (species)
version 9.1 (current version)
General
@ref: 4194
BacDive-ID: 2440
DSM-Number: 11080
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-negative
description: Halochromatium glycolicum SL 3201 is an anaerobe, Gram-negative bacterium that was isolated from solar lake .
NCBI tax id
- NCBI tax id: 85075
- Matching level: species
strain history
- @ref: 4194
- history: <- P. Caumette, SL 3201
doi: 10.13145/bacdive2440.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Chromatiales
- family: Chromatiaceae
- genus: Halochromatium
- species: Halochromatium glycolicum
- full scientific name: Halochromatium glycolicum (Caumette et al. 1997) Imhoff et al. 1998
synonyms
- @ref: 20215
- synonym: Chromatium glycolicum
@ref: 4194
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Chromatiales
family: Chromatiaceae
genus: Halochromatium
species: Halochromatium glycolicum
full scientific name: Halochromatium glycolicum (Caumette et al. 1997) Imhoff et al. 1998
strain designation: SL 3201, 6410
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 96.744
Culture and growth conditions
culture medium
- @ref: 4194
- name: CHROMATIUM SALEXIGENS MEDIUM (DSMZ Medium 421)
- growth: yes
- link: https://mediadive.dsmz.de/medium/421
- composition: Name: CHROMATIUM SALEXIGENS MEDIUM (DSMZ Medium 421) Composition: NaCl 100.0 g/l MgCl2 x 6 H2O 3.0 g/l NaHCO3 1.5 g/l Na2S x 9 H2O 0.592592 g/l MgSO4 x 7 H2O 0.500001 g/l Na acetate 0.5 g/l Sodium Thiosulfate 0.5 g/l Ammonium chloride 0.349999 g/l KH2PO4 0.349999 g/l KCl 0.349999 g/l CaCl2 x 2 H2O 0.25 g/l Dextrose 0.25 g/l Pyruvic acid sodium salt 0.25 g/l Ammonium acetate 0.25 g/l Yeast extract 0.25 g/l Na2-EDTA 0.003 g/l Resazurin 0.00225 g/l FeSO4 x 7 H2O 0.0011 g/l Vitamin B12 0.001 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 2 H2O 5e-05 g/l ZnCl2 4.2e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Na2MoO4 x 2 H2O 1.8e-05 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water
culture temp
- @ref: 4194
- growth: positive
- type: growth
- temperature: 25
Physiology and metabolism
oxygen tolerance
- @ref: 4194
- oxygen tolerance: anaerobe
spore formation
- @ref: 69481
- spore formation: no
- confidence: 93
Isolation, sampling and environmental information
isolation
- @ref: 4194
- sample type: solar lake (microbial mat)
- geographic location: Sinai
- country: Egypt
- origin.country: EGY
- continent: Africa
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Microbial community | #Microbial mat |
| #Condition | #Saline |
Safety information
risk assessment
- @ref: 4194
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Halochromatium glycolicum 16S rRNA gene, type strain BN 3201T
- accession: X93472
- length: 1451
- database: nuccore
- NCBI tax ID: 85075
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Halochromatium glycolicum DSM 11080 | GCA_016584085 | contig | ncbi | 85075 |
| 66792 | Halochromatium glycolicum strain DSM 11080 | 85075.5 | wgs | patric | 85075 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 93 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 96.744 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 62.657 | yes |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 71.129 | yes |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.94 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 93.744 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 70.735 | no |
External links
@ref: 4194
culture collection no.: DSM 11080, ATCC 700202
straininfo link
- @ref: 71987
- straininfo: 45410
literature
- topic: Phylogeny
- Pubmed-ID: 9000336
- title: Chromatium glycolicum sp. nov., a moderately halophilic purple sulfur bacterium that uses glycolate as substrate
- authors: Caumette P, Imhoff JF, Suling J, Matheron R
- journal: Arch Microbiol
- DOI: 10.1007/s002030050410
- year: 1997
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 4194 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11080) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11080 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 71987 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID45410.1 | StrainInfo: A central database for resolving microbial strain identifiers |