Name: Halarchaeum salinum MH1-34-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24087

Type strain:

Species: Halarchaeum salinum

Strain Designation: MH1-34-1

Culture col. no.: DSM 27207, CECT 7574, JCM 16330

Strain history: H. Minegishi MH1-34-1.

NCBI tax ID(s): 489912 (species)

SI-ID 387488

CECT 7574, JCM 16330, DSM 27207

Special Collections

Other strains from Halarchaeum salinum

Section

Halarchaeum salinum MH1-34-1 is a Gram-negative archaeon that was isolated from solar salt.

Gram-negative
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Halobacteriaceae*
	Genus	*Halarchaeum*
	Species	**Halarchaeum salinum**
	Full Scientific Name (LPSN)	Halarchaeum salinum Yamauchi et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30803]	Gram stain	negative

[Ref.: #30803]	Cell length	0.8 µm

[Ref.: #30803]	Cell width	0.8 µm

[Ref.: #30803]	Motility	no

[Ref.: #30803]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21214]

Culture medium

HALOARCHAEUM SALINUM MEDIUM (DSMZ Medium 1497)

[Ref.: #21214]

Culture medium growth

[Ref.: #21214]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21214]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21214]	growth	37 °C
[Ref.: #30803]	growth	15-45 °C
[Ref.: #30803]	optimum	42 °C
[Ref.: #67770]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #30803]			optimum	5.2
[Ref.: #30803]			growth	4.5-7.2

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30803]		NaCl		growth	12-30	%
[Ref.: #30803]		NaCl		optimum	18	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30803]		succinate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21214]	Sample type/isolated from	solar salt
[Ref.: #21214]	Geographic location (country and/or sea, region)	Sulawesi
[Ref.: #21214]	Country	Indonesia
[Ref.: #21214]	Country ISO 3 Code	IDN
[Ref.: #21214]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Commercial solar salt produced in Indonesia
* marker position based on {}

Isolation sources categories

#Condition

#Saline

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB372514 (>99% sequence identity) for Halarchaeum salinum from Microbeatlas

Aquatic Samples	2
Soil Samples
Animal Samples
Plant Samples
Total Samples	2

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21214]	Halarchaeum salinum gene for 16S ribosomal RNA, complete sequence	AB372514	1473	GenBank ENA	489912 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halarchaeum salinum DSM 27207	2913502468	draft	JGI IMG/M	489912 tax ID	*

[Ref.: #30803]	GC-content	59.3 mol%
[Ref.: #67770]	GC-content	59.3 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #21214]

Culture collection no.

DSM 27207, CECT 7574, JCM 16330

[Ref.: #88052]

SI-ID 387488

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halarchaeum grantii sp. nov., a moderately acidophilic haloarchaeon isolated from a commercial salt sample.	Shimane Y, Minegishi H, Echigo A, Kamekura M, Itoh T, Ohkuma M, Tsubouchi T, Usui K, Maruyama T, Usami R, Hatada Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.000501	2015	*
Phylogeny	Halarchaeum nitratireducens sp. nov., a moderately acidophilic haloarchaeon isolated from commercial sea salt.	Minegishi H, Yamauchi Y, Echigo A, Shimane Y, Kamekura M, Itoh T, Ohkuma M, Usami R	Int J Syst Evol Microbiol	10.1099/ijs.0.054668-0	2013	*
Phylogeny	Halarchaeum rubridurum sp. nov., a moderately acidophilic haloarchaeon isolated from commercial sea salt samples.	Yamauchi Y, Minegishi H, Echigo A, Shimane Y, Kamekura M, Itoh T, Ohkuma M, Doukyu N, Inoue A, Usami R	Int J Syst Evol Microbiol	10.1099/ijs.0.049262-0	2013	*
Phylogeny	Halarchaeum salinum sp. nov., a moderately acidophilic haloarchaeon isolated from commercial sea salt.	Yamauchi Y, Minegishi H, Echigo A, Shimane Y, Shimoshige H, Kamekura M, Itoh T, Doukyu N, Inoue A, Usami R	Int J Syst Evol Microbiol	10.1099/ijs.0.044693-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21214

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27207

#30803

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27134 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88052

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID387488.1 )

#27134

IJSEM 1138 2013 ( DOI 10.1099/ijs.0.044693-0 , PubMed 22753525 )

* These data were automatically processed and therefore are not curated

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