Strain identifier
BacDive ID: 24087
Type strain: 
Species: Halarchaeum salinum
Strain Designation: MH1-34-1
Strain history: H. Minegishi MH1-34-1.
NCBI tax ID(s): 489912 (species)
version 9 (current version)
General
@ref: 21214
BacDive-ID: 24087
DSM-Number: 27207
keywords: genome sequence, 16S sequence, Archaea, Gram-negative
description: Halarchaeum salinum MH1-34-1 is a Gram-negative archaeon that was isolated from solar salt.
NCBI tax id
- NCBI tax id: 489912
- Matching level: species
strain history
| @ref | history |
|---|---|
| 21214 | <- JCM <- H. Minegishi, Toyo Univ., Kawago, Saitama, Japan; MH1-34-1 |
| 67770 | H. Minegishi MH1-34-1. |
doi: 10.13145/bacdive24087.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Halobacteriales
- family: Halobacteriaceae
- genus: Halarchaeum
- species: Halarchaeum salinum
- full scientific name: Halarchaeum salinum Yamauchi et al. 2013
@ref: 21214
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Halobacteriales
family: Halobacteriaceae
genus: Halarchaeum
species: Halarchaeum salinum
full scientific name: Halarchaeum salinum Yamauchi et al. 2013
strain designation: MH1-34-1
type strain: yes
Morphology
cell morphology
- @ref: 30803
- gram stain: negative
- cell length: 0.8 µm
- cell width: 0.8 µm
- motility: no
pigmentation
- @ref: 30803
- production: yes
Culture and growth conditions
culture medium
- @ref: 21214
- name: HALOARCHAEUM SALINUM MEDIUM (DSMZ Medium 1497)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1497
- composition: Name: HALOARCHAEUM SALINUM MEDIUM (DSMZ Medium 1497) Composition: NaCl 200.0 g/l Agar 40.0 g/l MgCl2 x 7 H2O 40.0 g/l K2SO4 5.0 g/l Casamino acids 4.0 g/l L-Glutamic acid 2.0 g/l Yeast extract 2.0 g/l Trisodium citrate x 2 H2O 2.0 g/l NH4Cl 1.0 g/l KH2PO4 1.0 g/l FeSO4 0.004 g/l Na2S2O3 x 5 H2O 0.004 g/l CaCl2 x 2 H2O 0.002 g/l CoCl2 x 6 H2O 0.0006 g/l ZnCl2 0.0002 g/l NiCl2 x 6 H2O 0.0002 g/l MnCl2 x 4 H2O 0.0002 g/l Na2MoO4 x 2 H2O 0.0002 g/l AlCl3 8e-05 g/l Na2WO4 x 2 H2O 4e-05 g/l H3BO4 4e-05 g/l BaCl2 x 2 H2O 2e-05 g/l CuCl2 x 6 H2O 2e-05 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 21214 | positive | growth | 37 |
| 30803 | positive | growth | 15-45 |
| 30803 | positive | optimum | 42 |
| 67770 | positive | growth | 37 |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 30803 | positive | growth | 4.5-7.2 |
| 30803 | positive | optimum | 5.2 |
Physiology and metabolism
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30803 | NaCl | positive | growth | 12-30 % |
| 30803 | NaCl | positive | optimum | 18 % |
metabolite utilization
- @ref: 30803
- Chebi-ID: 30031
- metabolite: succinate
- utilization activity: +
- kind of utilization tested: carbon source
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 21214 | solar salt | Sulawesi | Indonesia | IDN | Asia |
| 67770 | Commercial solar salt produced in Indonesia |
isolation source categories
- Cat1: #Condition
- Cat2: #Saline
taxonmaps
- @ref: 69479
- File name: preview.99_189060.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17659;96_68866;97_89513;98_121794;99_189060&stattab=map
- Last taxonomy: Halarchaeum salinum
- 16S sequence: AB372514
- Sequence Identity:
- Total samples: 2
- aquatic counts: 2
Sequence information
16S sequences
- @ref: 21214
- description: Halarchaeum salinum gene for 16S ribosomal RNA, complete sequence
- accession: AB372514
- length: 1473
- database: nuccore
- NCBI tax ID: 489912
Genome sequences
- @ref: 66792
- description: Halarchaeum salinum DSM 27207
- accession: 2913502468
- assembly level: draft
- database: img
- NCBI tax ID: 489912
GC content
| @ref | GC-content | method |
|---|---|---|
| 30803 | 59.3 | |
| 67770 | 59.3 | high performance liquid chromatography (HPLC) |
External links
@ref: 21214
culture collection no.: DSM 27207, CECT 7574, JCM 16330
straininfo link
- @ref: 88052
- straininfo: 387488
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 22753525 | Halarchaeum salinum sp. nov., a moderately acidophilic haloarchaeon isolated from commercial sea salt. | Yamauchi Y, Minegishi H, Echigo A, Shimane Y, Shimoshige H, Kamekura M, Itoh T, Doukyu N, Inoue A, Usami R | Int J Syst Evol Microbiol | 10.1099/ijs.0.044693-0 | 2012 | Base Composition, DNA, Archaeal/genetics, Halobacteriaceae/*classification/genetics/isolation & purification, Indonesia, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, Philippines, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, *Sodium Chloride | Genetics |
| Phylogeny | 23435243 | Halarchaeum rubridurum sp. nov., a moderately acidophilic haloarchaeon isolated from commercial sea salt samples. | Yamauchi Y, Minegishi H, Echigo A, Shimane Y, Kamekura M, Itoh T, Ohkuma M, Doukyu N, Inoue A, Usami R | Int J Syst Evol Microbiol | 10.1099/ijs.0.049262-0 | 2013 | Base Composition, DNA, Archaeal/genetics, Halobacteriaceae/*classification/genetics/isolation & purification, Indonesia, Japan, Lipids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Philippines, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride | Genetics |
| Phylogeny | 23771625 | Halarchaeum nitratireducens sp. nov., a moderately acidophilic haloarchaeon isolated from commercial sea salt. | Minegishi H, Yamauchi Y, Echigo A, Shimane Y, Kamekura M, Itoh T, Ohkuma M, Usami R | Int J Syst Evol Microbiol | 10.1099/ijs.0.054668-0 | 2013 | Base Composition, DNA, Archaeal/genetics, Halobacteriaceae/*classification/genetics/isolation & purification, Indonesia, Japan, Lipids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, *Sodium Chloride | Genetics |
| Phylogeny | 28875923 | Halarchaeum grantii sp. nov., a moderately acidophilic haloarchaeon isolated from a commercial salt sample. | Shimane Y, Minegishi H, Echigo A, Kamekura M, Itoh T, Ohkuma M, Tsubouchi T, Usui K, Maruyama T, Usami R, Hatada Y | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000501 | 2015 |
Reference
| @id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 21214 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27207 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27207) | |||
| 30803 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27134 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 88052 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID387488.1 |