Name: Chryseobacterium gallinarum 100
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24040

Type strain:

Species: Chryseobacterium gallinarum

Strain Designation: 100

Culture col. no.: DSM 27622, CCM 8493, LMG 27808, CIP 110649

Strain history: CIP <- 2013, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 100

NCBI tax ID(s): 1324352 (species)

SI-ID 390470

LMG 27808, CCM 8493, DSM 27622, CIP 110649

Section

Chryseobacterium gallinarum 100 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from pharyngeal scrape sample from a living and apparently healthy chicken.

Gram-negative
rod-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium gallinarum**
	Full Scientific Name (LPSN)	Chryseobacterium gallinarum Kämpfer et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #119514]	Gram stain	negative

[Ref.: #119514]	Cell shape	rod-shaped

[Ref.: #119514]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #36611]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #36611]

Culture medium growth

[Ref.: #36611]

Culture medium composition

expand / minimize

[Ref.: #20935]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #20935]

Culture medium growth

[Ref.: #20935]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20935]

Culture medium composition

expand / minimize

[Ref.: #119514]

Culture medium

CIP Medium 72

[Ref.: #119514]

Culture medium growth

[Ref.: #119514]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #36611]			growth	30 °C

[Ref.: #36611]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20935]	Sample type/isolated from	pharyngeal scrape sample from a living and apparently healthy chicken
[Ref.: #20935]	Geographic location (country and/or sea, region)	Saxony-Anhalt
[Ref.: #20935]	Country	Germany
[Ref.: #20935]	Country ISO 3 Code	DEU
[Ref.: #20935]	Continent	Europe

[Ref.: #119514]	Sample type/isolated from	Chicken
[Ref.: #119514]	Country	Germany
[Ref.: #119514]	Country ISO 3 Code	DEU
[Ref.: #119514]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Birds	#Chicken
#Host Body-Site	#Oral cavity and airways	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20935]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119514]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20935]	Chryseobacterium gallinarum strain 100 16S ribosomal RNA gene, partial sequence	KC494697	1393	ENA	1324352 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chryseobacterium gallinarum DSM 27622	GCA_001021975	complete	GenBank	1324352 tax ID	*
[Ref.: #66792]	Chryseobacterium gallinarum strain DSM 27622	1324352.5	complete	PATRIC	1324352 tax ID	*

[Ref.: #20935]

GC-content

37.3 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chryseobacterium gallinarum DSM 27622 NCBI: GCA_001021975.1
[Ref.: #69480]	motile	no	92.737	no
[Ref.: #69480]	flagellated	no	95.677	no
[Ref.: #69480]	gram-positive	no	98.153	no
[Ref.: #69480]	anaerobic	no	99.604	no
[Ref.: #69480]	aerobic	yes	89.933	no
[Ref.: #69480]	halophile	no	93.75	no
[Ref.: #69480]	spore-forming	no	94.037	no
[Ref.: #69480]	thermophile	no	99.751	yes
[Ref.: #69480]	glucose-util	yes	82.922	no
[Ref.: #69480]	glucose-ferment	no	93.833	no

Availability in culture collections External links

[Ref.: #20935]

Culture collection no.

DSM 27622, CCM 8493, LMG 27808, CIP 110649

[Ref.: #88013]

SI-ID 390470

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium artocarpi sp. nov., isolated from the rhizosphere soil of Artocarpus integer.	Venil CK, Nordin N, Zakaria ZA, Ahmad WA	Int J Syst Evol Microbiol	10.1099/ijs.0.063594-0	2014	*
Phylogeny	Chryseobacterium gallinarum sp. nov., isolated from a chicken, and Chryseobacterium contaminans sp. nov., isolated as a contaminant from a rhizosphere sample.	Kampfer P, Poppel MT, Wilharm G, Busse HJ, McInroy JA, Glaeser SP	Int J Syst Evol Microbiol	10.1099/ijs.0.058933-0	2014	*
Genetics	Complete genome sequence of a keratin-degrading bacterium Chryseobacterium gallinarum strain DSM 27622(T) isolated from chicken.	Park GS, Hong SJ, Jung BK, Khan AR, Park YJ, Park CE, Lee A, Kwak Y, Lee YJ, Lee DW, Lee C, Park CK, Shin JH	J Biotechnol	10.1016/j.jbiotec.2015.07.007	2015	*
Phylogeny	Characterization and Comparative Genomic Analysis of a Highly Colistin-Resistant Chryseobacterium gallinarum: a Rare, Uncommon Pathogen.	Gaur M, Dey S, Sahu A, Dixit S, Sarathbabu S, Zothanzama J, Sahoo RK, Behera DU, Monika, Subudhi E	Front Cell Infect Microbiol	10.3389/fcimb.2022.933006	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20935

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27622

#36611 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88013

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID390470.1 )

#119514 Collection of Institut Pasteur ; Curators of the CIP; CIP 110649
* These data were automatically processed and therefore are not curated

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Chryseobacterium gallinarum DSM 27622

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