Name: Chryseobacterium contaminans C-26
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24041

Type strain:

Species: Chryseobacterium contaminans

Strain Designation: C-26, C26

Culture col. no.: DSM 27621, CCM 8492, LMG 27810, CIP 110650

Strain history: CIP <- 2013, P. Kämpfer, Giessen Univ., Giessen, Germany: strain C26

NCBI tax ID(s): 1423959 (species)

SI-ID 390472

LMG 27810, CCM 8492, CIP 110650

Section

Chryseobacterium contaminans C-26 is a mesophilic bacterium that was isolated from contamination from an agar plate of a rhizosphere sample.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium contaminans**
	Full Scientific Name (LPSN)	Chryseobacterium contaminans Kämpfer et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #118736]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #118736]	Cell shape	rod-shaped

[Ref.: #118736]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.855

Information on culture and growth conditions Culture and growth conditions

[Ref.: #36609]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #36609]

Culture medium growth

[Ref.: #36609]

Culture medium composition

expand / minimize

[Ref.: #20936]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #20936]

Culture medium growth

[Ref.: #20936]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20936]

Culture medium composition

expand / minimize

[Ref.: #118736]

Culture medium

CIP Medium 72

[Ref.: #118736]

Culture medium growth

[Ref.: #118736]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #36609]			growth	30 °C

[Ref.: #36609]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20936]	Sample type/isolated from	contamination from an agar plate of a rhizosphere sample
[Ref.: #20936]	Geographic location (country and/or sea, region)	Alabama
[Ref.: #20936]	Country	USA
[Ref.: #20936]	Country ISO 3 Code	USA
[Ref.: #20936]	Continent	North America

[Ref.: #118736]	Sample type/isolated from	Environment, Contamination on an agar plate from a rhizosphere
[Ref.: #118736]	Country	United States of America
[Ref.: #118736]	Country ISO 3 Code	USA
[Ref.: #118736]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Engineered	#Laboratory	#Lab enrichment
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF652079 (>99% sequence identity) for Chryseobacterium contaminans from Microbeatlas

Aquatic Samples	71
Soil Samples	12
Animal Samples	214
Plant Samples	20
Total Samples	317

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20936]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118736]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20936]	Chryseobacterium contaminans strain C-26 16S ribosomal RNA gene, partial sequence	KF652079	1395	ENA	1423959 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chryseobacterium contaminans DSM 27621	GCA_900142615	scaffold	GenBank	1423959 tax ID	*
[Ref.: #66792]	Chryseobacterium contaminans C-26	GCA_001684955	contig	GenBank	1423959 tax ID	*
[Ref.: #66792]	Chryseobacterium contaminans strain DSM 27621	1423959.6	wgs	PATRIC	1423959 tax ID	*
[Ref.: #66792]	Chryseobacterium contaminans C-26	2772190705	draft	JGI IMG/M	1423959 tax ID	*
[Ref.: #66792]	Chryseobacterium contaminans DSM 27621	2700988701	draft	JGI IMG/M	1423959 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chryseobacterium contaminans DSM 27621 NCBI: GCA_900142615.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chryseobacterium contaminans DSM 27621 NCBI: GCA_900142615.1
[Ref.: #69480]	motile	no	91.366	no
[Ref.: #69480]	flagellated	no	95.59	no
[Ref.: #69480]	gram-positive	no	98.169	no
[Ref.: #69480]	anaerobic	no	99.651	no
[Ref.: #69480]	aerobic	yes	92.616	no
[Ref.: #69480]	halophile	no	93.484	no
[Ref.: #69480]	spore-forming	no	94.341	no
[Ref.: #69480]	thermophile	no	99.529	yes
[Ref.: #69480]	glucose-util	yes	83.565	no
[Ref.: #69480]	glucose-ferment	no	93.219	no

Availability in culture collections External links

[Ref.: #20936]

Culture collection no.

DSM 27621, CCM 8492, LMG 27810, CIP 110650

[Ref.: #88014]

SI-ID 390472

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium gallinarum sp. nov., isolated from a chicken, and Chryseobacterium contaminans sp. nov., isolated as a contaminant from a rhizosphere sample.	Kampfer P, Poppel MT, Wilharm G, Busse HJ, McInroy JA, Glaeser SP	Int J Syst Evol Microbiol	10.1099/ijs.0.058933-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20936

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27621

#36609 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88014

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID390472.1 )

#118736 Collection of Institut Pasteur ; Curators of the CIP; CIP 110650
* These data were automatically processed and therefore are not curated

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Chryseobacterium contaminans DSM 27621

Chryseobacterium contaminans DSM 27621

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