Strain identifier

BacDive ID: 24040

Type strain: Yes

Species: Chryseobacterium gallinarum

Strain Designation: 100

Strain history: CIP <- 2013, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 100

NCBI tax ID(s): 1324352 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 20935

BacDive-ID: 24040

DSM-Number: 27622

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped

description: Chryseobacterium gallinarum 100 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from pharyngeal scrape sample from a living and apparently healthy chicken.

NCBI tax id

  • NCBI tax id: 1324352
  • Matching level: species

strain history

@refhistory
366112013, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 100
20935<- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; 100 <- G. Wilharm
119514CIP <- 2013, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 100

doi: 10.13145/bacdive24040.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium gallinarum
  • full scientific name: Chryseobacterium gallinarum Kämpfer et al. 2014

@ref: 20935

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Weeksellaceae

genus: Chryseobacterium

species: Chryseobacterium gallinarum

full scientific name: Chryseobacterium gallinarum Kämpfer et al. 2014 emend. Hahnke et al. 2016

strain designation: 100

type strain: yes

Morphology

cell morphology

  • @ref: 119514
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36611MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
20935CASO AGAR (MERCK 105458) (DSMZ Medium 220)yesName: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/220
119514CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

  • @ref: 36611
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
20935pharyngeal scrape sample from a living and apparently healthy chickenSaxony-AnhaltGermanyDEUEurope
119514ChickenGermanyDEUEurope

isolation source categories

Cat1Cat2Cat3
#Host#Birds#Chicken
#Host Body-Site#Oral cavity and airways

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
209351Risk group (German classification)
1195141Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20935
  • description: Chryseobacterium gallinarum strain 100 16S ribosomal RNA gene, partial sequence
  • accession: KC494697
  • length: 1393
  • database: ena
  • NCBI tax ID: 1324352

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Chryseobacterium gallinarum DSM 27622GCA_001021975completencbi1324352
66792Chryseobacterium gallinarum strain DSM 276221324352.5completepatric1324352

GC content

  • @ref: 20935
  • GC-content: 37.3
  • method: sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno92.737no
flagellatedno95.677no
gram-positiveno98.153no
anaerobicno99.604no
aerobicyes89.933no
halophileno93.75no
spore-formingno94.037no
thermophileno99.751yes
glucose-utilyes82.922no
glucose-fermentno93.833no

External links

@ref: 20935

culture collection no.: DSM 27622, CCM 8493, LMG 27808, CIP 110649

straininfo link

  • @ref: 88013
  • straininfo: 390470

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24449786Chryseobacterium gallinarum sp. nov., isolated from a chicken, and Chryseobacterium contaminans sp. nov., isolated as a contaminant from a rhizosphere sample.Kampfer P, Poppel MT, Wilharm G, Busse HJ, McInroy JA, Glaeser SPInt J Syst Evol Microbiol10.1099/ijs.0.058933-02014Alabama, Animals, Bacterial Typing Techniques, Chickens/*microbiology, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Germany, Molecular Sequence Data, Nucleic Acid Hybridization, Pharynx/microbiology, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, Spermidine/analogs & derivatives/chemistry, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny24958763Chryseobacterium artocarpi sp. nov., isolated from the rhizosphere soil of Artocarpus integer.Venil CK, Nordin N, Zakaria ZA, Ahmad WAInt J Syst Evol Microbiol10.1099/ijs.0.063594-02014Artocarpus/*microbiology, Bacterial Typing Techniques, Base Composition, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Malaysia, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics
Genetics26209507Complete genome sequence of a keratin-degrading bacterium Chryseobacterium gallinarum strain DSM 27622(T) isolated from chicken.Park GS, Hong SJ, Jung BK, Khan AR, Park YJ, Park CE, Lee A, Kwak Y, Lee YJ, Lee DW, Lee C, Park CK, Shin JHJ Biotechnol10.1016/j.jbiotec.2015.07.0072015Animals, Base Sequence, Chickens/*microbiology, Chryseobacterium/*genetics/*isolation & purification, *Genome, Bacterial, Keratins/*metabolism, *ProteolysisEnzymology
Phylogeny35909954Characterization and Comparative Genomic Analysis of a Highly Colistin-Resistant Chryseobacterium gallinarum: a Rare, Uncommon Pathogen.Gaur M, Dey S, Sahu A, Dixit S, Sarathbabu S, Zothanzama J, Sahoo RK, Behera DU, Monika, Subudhi EFront Cell Infect Microbiol10.3389/fcimb.2022.9330062022*Anti-Bacterial Agents/pharmacology, *Chryseobacterium/genetics/isolation & purification, *Colistin/pharmacology, *Drug Resistance, Multiple, Bacterial/genetics, *Flavobacteriaceae Infections/drug therapy/genetics, Genome, Bacterial/genetics, Humans, Microbial Sensitivity Tests, *RNA, Ribosomal, 16S/genetics, beta-Lactamases/geneticsGenetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20935Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27622Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27622)
36611Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/30453
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
88013Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID390470.1
119514Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110649Collection of Institut Pasteur (CIP 110649)