Strain identifier
BacDive ID: 24040
Type strain:
Species: Chryseobacterium gallinarum
Strain Designation: 100
Strain history: CIP <- 2013, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 100
NCBI tax ID(s): 1324352 (species)
General
@ref: 20935
BacDive-ID: 24040
DSM-Number: 27622
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped
description: Chryseobacterium gallinarum 100 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from pharyngeal scrape sample from a living and apparently healthy chicken.
NCBI tax id
- NCBI tax id: 1324352
- Matching level: species
strain history
@ref | history |
---|---|
36611 | 2013, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 100 |
20935 | <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; 100 <- G. Wilharm |
119514 | CIP <- 2013, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 100 |
doi: 10.13145/bacdive24040.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Weeksellaceae
- genus: Chryseobacterium
- species: Chryseobacterium gallinarum
- full scientific name: Chryseobacterium gallinarum Kämpfer et al. 2014
@ref: 20935
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Weeksellaceae
genus: Chryseobacterium
species: Chryseobacterium gallinarum
full scientific name: Chryseobacterium gallinarum Kämpfer et al. 2014 emend. Hahnke et al. 2016
strain designation: 100
type strain: yes
Morphology
cell morphology
- @ref: 119514
- gram stain: negative
- cell shape: rod-shaped
- motility: no
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
36611 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
20935 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water | https://mediadive.dsmz.de/medium/220 |
119514 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
- @ref: 36611
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
20935 | pharyngeal scrape sample from a living and apparently healthy chicken | Saxony-Anhalt | Germany | DEU | Europe |
119514 | Chicken | Germany | DEU | Europe |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Birds | #Chicken |
#Host Body-Site | #Oral cavity and airways |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
20935 | 1 | Risk group (German classification) |
119514 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 20935
- description: Chryseobacterium gallinarum strain 100 16S ribosomal RNA gene, partial sequence
- accession: KC494697
- length: 1393
- database: ena
- NCBI tax ID: 1324352
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Chryseobacterium gallinarum DSM 27622 | GCA_001021975 | complete | ncbi | 1324352 |
66792 | Chryseobacterium gallinarum strain DSM 27622 | 1324352.5 | complete | patric | 1324352 |
GC content
- @ref: 20935
- GC-content: 37.3
- method: sequence analysis
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 92.737 | no |
flagellated | no | 95.677 | no |
gram-positive | no | 98.153 | no |
anaerobic | no | 99.604 | no |
aerobic | yes | 89.933 | no |
halophile | no | 93.75 | no |
spore-forming | no | 94.037 | no |
thermophile | no | 99.751 | yes |
glucose-util | yes | 82.922 | no |
glucose-ferment | no | 93.833 | no |
External links
@ref: 20935
culture collection no.: DSM 27622, CCM 8493, LMG 27808, CIP 110649
straininfo link
- @ref: 88013
- straininfo: 390470
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 24449786 | Chryseobacterium gallinarum sp. nov., isolated from a chicken, and Chryseobacterium contaminans sp. nov., isolated as a contaminant from a rhizosphere sample. | Kampfer P, Poppel MT, Wilharm G, Busse HJ, McInroy JA, Glaeser SP | Int J Syst Evol Microbiol | 10.1099/ijs.0.058933-0 | 2014 | Alabama, Animals, Bacterial Typing Techniques, Chickens/*microbiology, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Germany, Molecular Sequence Data, Nucleic Acid Hybridization, Pharynx/microbiology, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, Spermidine/analogs & derivatives/chemistry, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Phylogeny | 24958763 | Chryseobacterium artocarpi sp. nov., isolated from the rhizosphere soil of Artocarpus integer. | Venil CK, Nordin N, Zakaria ZA, Ahmad WA | Int J Syst Evol Microbiol | 10.1099/ijs.0.063594-0 | 2014 | Artocarpus/*microbiology, Bacterial Typing Techniques, Base Composition, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Malaysia, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Genetics | 26209507 | Complete genome sequence of a keratin-degrading bacterium Chryseobacterium gallinarum strain DSM 27622(T) isolated from chicken. | Park GS, Hong SJ, Jung BK, Khan AR, Park YJ, Park CE, Lee A, Kwak Y, Lee YJ, Lee DW, Lee C, Park CK, Shin JH | J Biotechnol | 10.1016/j.jbiotec.2015.07.007 | 2015 | Animals, Base Sequence, Chickens/*microbiology, Chryseobacterium/*genetics/*isolation & purification, *Genome, Bacterial, Keratins/*metabolism, *Proteolysis | Enzymology |
Phylogeny | 35909954 | Characterization and Comparative Genomic Analysis of a Highly Colistin-Resistant Chryseobacterium gallinarum: a Rare, Uncommon Pathogen. | Gaur M, Dey S, Sahu A, Dixit S, Sarathbabu S, Zothanzama J, Sahoo RK, Behera DU, Monika, Subudhi E | Front Cell Infect Microbiol | 10.3389/fcimb.2022.933006 | 2022 | *Anti-Bacterial Agents/pharmacology, *Chryseobacterium/genetics/isolation & purification, *Colistin/pharmacology, *Drug Resistance, Multiple, Bacterial/genetics, *Flavobacteriaceae Infections/drug therapy/genetics, Genome, Bacterial/genetics, Humans, Microbial Sensitivity Tests, *RNA, Ribosomal, 16S/genetics, beta-Lactamases/genetics | Genetics |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
20935 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27622 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27622) | |
36611 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/30453 | ||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
88013 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID390470.1 | |
119514 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110649 | Collection of Institut Pasteur (CIP 110649) |