Chryseobacterium hispalense (DSM 25574, CCUG 63019, AG13)

Name: Chryseobacterium hispalense (DSM 25574, CCUG 63019, AG13)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24039

Type strain

Strain Designation AG13

Culture col. no. DSM 25574 CCUG 63019 AG13

NCBI tax ID(s) 491205 1453492

Special Collections DSMZ CCUG Literature strains

History DSMZ <- M. Montero-Calasanz, IFAPA Centro Las Torres-Tomejil, Consejeria de Agricultura y Pesca, Alcalá del Rio (Sevilla), Spain; AG13

Links

Chryseobacterium hispalense AG13 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from water from a rainwater pond in an olive tree nursery.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 402619

DSM 25574,CCUG 63019

@ref 20215

Last LPSN update 2026-05-29 08:30:32

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Weeksellaceae

Genus Chryseobacterium

Species Chryseobacterium hispalense

Full scientific name Chryseobacterium hispalense Montero-Calasanz et al. 2013

BacDive ID	Other strains from **Chryseobacterium hispalense** (1)	Type strain
172929	C. hispalense CIP 72.7

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31113	negative	1.45 µm	0.4 µm	rod-shaped
125438	negative				96.5
125439	negative				99.71

Pigmentation

31113

Productionyes

Multimedia

@ref:	66793
multimedia content:	EM_DSM_25574_1.jpg
multimedia.multimedia content:	EM_DSM_25574_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_25574_2.jpg
multimedia.multimedia content:	EM_DSM_25574_2.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_25574_3.jpg
multimedia.multimedia content:	EM_DSM_25574_3.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_25574_4.jpg
multimedia.multimedia content:	EM_DSM_25574_4.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_25574_5.jpg
multimedia.multimedia content:	EM_DSM_25574_5.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_25574_6.jpg
multimedia.multimedia content:	EM_DSM_25574_6.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20934	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
20934	positive	growth	28
31113	positive	growth	10-40
31113	positive	optimum	27.5
62932	positive	growth	30

Culture pH

@ref	Ability	Type	PH
31113	positive	growth	5.0-8.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31113	aerobe
62932	aerobe
125439	obligate aerobe	93.616

Spore formation

@ref	Spore formation	Confidence
31113
125439		99.765
125438		91.871

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31113	NaCl	positive	growth	0-4 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31113	30089 ChEBI	acetate	+	carbon source
31113	29016 ChEBI	arginine	+	carbon source
31113	35391 ChEBI	aspartate	+	carbon source
31113	16947 ChEBI	citrate	+	carbon source
31113	23652 ChEBI	dextrin	+	carbon source
31113	4853 ChEBI	esculin	+	hydrolysis
31113	28757 ChEBI	fructose	+	carbon source
31113	33984 ChEBI	fucose	+	carbon source
31113	28260 ChEBI	galactose	+	carbon source
31113	24175 ChEBI	galacturonate	+	carbon source
31113	17234 ChEBI	glucose	+	carbon source
31113	32323 ChEBI	glucuronamide	+	carbon source
31113	29987 ChEBI	glutamate	+	carbon source
31113	25115 ChEBI	malate	+	carbon source
31113	17306 ChEBI	maltose	+	carbon source
31113	37684 ChEBI	mannose	+	carbon source
31113	17632 ChEBI	nitrate	+	reduction
31113	26490 ChEBI	quinate	+	carbon source
31113	26546 ChEBI	rhamnose	+	carbon source
31113	53423 ChEBI	tween 40	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
31113	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
31113	35581 ChEBI	indole	+

Enzymes

@ref	Value	Activity	Ec
31113	alkaline phosphatase	+	3.1.3.1
31113	catalase	+	1.11.1.6
31113	cytochrome oxidase	+	1.9.3.1
31113	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Pond (small)
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Sampling date
20934	water from a rainwater pond in an olive tree nursery	Burguillos, Seville (37° 34' 38.1714''N 5° 58' 18.5592'' W)	Spain	ESP	Europe	37.5773	-5.9718 37.5773/-5.9718
62932	Pool water from olive tree nursery	Burguillos (Seville)	Spain	ESP	Europe			2006-04-01

Taxonmaps

69479

Global distribution of 16S sequence EU336941 (>99% sequence identity) for Chryseobacterium hispalense from Microbeatlas

Aquatic Samples	1277
Soil Samples	557
Animal Samples	1922
Plant Samples	508
Total Samples	4264

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20934	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Chryseobacterium hispalense DSM 25574	contig		491205.5		491205	74.4
66792	Chryseo hispalense genome assembly for Chryseobacterium hispalense DSM 25574	contig	GCA_000708615	491205.19	2585427834	491205	73.99

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20934	Chryseobacterium hispalense DSM 25574 16S ribosomal RNA gene, partial sequence	EU336941	1480		491205

GC content

@ref	GC-content (mol%)	Method
20934	37.2	high performance liquid chromatography (HPLC)
31113	37.2

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Chryseo hispalense genome assembly for Chryseobacterium hispalense DSM 25574
NCBI: GCA_000708615

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.62	no
125439	gram_stain	BacteriaNetⓘ	negative	99.71	no
125439	spore_formation	BacteriaNetⓘ	no	99.77	no
125439	motility	BacteriaNetⓘ	no	84.24	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Chryseobacterium hispalense DSM 25574
PATRIC: 491205.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.50	no
125438	anaerobic	anaerobicⓘ	no	98.08	yes
125438	spore-forming	spore-formingⓘ	no	91.87	no
125438	aerobic	aerobicⓘ	yes	84.48	yes
125438	thermophilic	thermophileⓘ	no	97.64	yes
125438	flagellated	motile2+ⓘ	no	89.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Insights into Evolutionary, Genomic, and Biogeographic Characterizations of Chryseobacterium nepalense Represented by a Polyvinyl Alcohol-Degrading Bacterium, AC3.	Liu X, Wang D, Yin Z, Sun L, Pang S, Liu J, Li W, Cui S, Huang W, Du Y, Xie Z.	Microbiol Spectr	10.1128/spectrum.02179-22	2022
Genetics	Comparative genomic analysis of Chryseobacterium species: deep insights into plant-growth-promoting and halotolerant capacities.	Jung H, Lee D, Lee S, Kong HJ, Park J, Seo YS.	Microb Genom	10.1099/mgen.0.001108	2023
Phylogeny	Chryseobacterium hispalense sp. nov., a plant-growth-promoting bacterium isolated from a rainwater pond in an olive plant nursery, and emended descriptions of Chryseobacterium defluvii, Chryseobacterium indologenes, Chryseobacterium wanjuense and Chryseobacterium gregarium.	Montero-Calasanz MDC, Goker M, Rohde M, Sproer C, Schumann P, Busse HJ, Schmid M, Tindall BJ, Klenk HP, Camacho M	Int J Syst Evol Microbiol	10.1099/ijs.0.052456-0	2013
Phylogeny	Chryseobacterium cheonjiense sp. nov., isolated from forest soil.	Chaudhary DK, Dahal RH, Kim DU, Kim J	Arch Microbiol	10.1007/s00203-020-02065-w	2020
Phylogeny	Chryseobacterium nepalense sp. nov., isolated from oil-contaminated soil.	Chaudhary DK, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001680	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20934	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25574
#27442	IJSEM 4386 2013 ( DOI 10.1099/ijs.0.052456-0 , PubMed 23907217 )
#31113	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27442
#62932	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 63019
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Chryseobacterium hispalense (DSM 25574, CCUG 63019, AG13)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000708615

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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