Chryseobacterium hispalense AG13 | Type strain | DSM 25574, CCUG 63019 | BacDiveID:24039

Strain identifier

BacDive ID: 24039

Type strain:

Species: Chryseobacterium hispalense

Strain Designation: AG13

Culture col. no.: DSM 25574, CCUG 63019

Strain history: <- M. Montero-Calasanz, IFAPA Centro Las Torres-Tomejil, Consejeria de Agricultura y Pesca, Alcalá del Rio (Sevilla), Spain; AG13

NCBI tax ID(s): 491205 (strain), 1453492 (species)

SI-ID 402619

DSM 25574, CCUG 63019

Other strains from Chryseobacterium hispalense

C. hispalense CIP 72.7

Section

Chryseobacterium hispalense AG13 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from water from a rainwater pond in an olive tree nursery.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium hispalense**
	Full Scientific Name (LPSN)	Chryseobacterium hispalense Montero-Calasanz et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31113]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.949

[Ref.: #31113]	Cell length	1.45 µm

[Ref.: #31113]	Cell width	0.4 µm

[Ref.: #31113]	Cell shape	rod-shaped

[Ref.: #31113]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %94.006

Pigment production

yes

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20934]			growth	28 °C
[Ref.: #31113]			growth	10-40 °C
[Ref.: #31113]			optimum	27.5 °C
[Ref.: #62932]			growth	30 °C

[Ref.: #20934]	Temperature range	mesophilic
[Ref.: #31113]	Temperature range	mesophilic
[Ref.: #62932]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31113]			growth	5.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31113]	Oxygen tolerance	aerobe
[Ref.: #62932]	Oxygen tolerance	aerobe

[Ref.: #31113]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31113]		NaCl		growth	0-4	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31113]		acetate ChEBI	+	carbon source
[Ref.: #31113]		arginine ChEBI	+	carbon source
[Ref.: #31113]		aspartate ChEBI	+	carbon source
[Ref.: #31113]		citrate ChEBI	+	carbon source
[Ref.: #31113]		dextrin ChEBI	+	carbon source
[Ref.: #31113]		esculin ChEBI	+	hydrolysis
[Ref.: #31113]		fructose ChEBI	+	carbon source
[Ref.: #31113]		fucose ChEBI	+	carbon source
[Ref.: #31113]		galactose ChEBI	+	carbon source
[Ref.: #31113]		galacturonate ChEBI	+	carbon source
[Ref.: #31113]		glucose ChEBI	+	carbon source
[Ref.: #31113]		glucuronamide ChEBI	+	carbon source
[Ref.: #31113]		glutamate ChEBI	+	carbon source
[Ref.: #31113]		malate ChEBI	+	carbon source
[Ref.: #31113]		maltose ChEBI	+	carbon source
[Ref.: #31113]		mannose ChEBI	+	carbon source
[Ref.: #31113]		nitrate ChEBI	+	reduction
[Ref.: #31113]		quinate ChEBI	+	carbon source
[Ref.: #31113]		rhamnose ChEBI	+	carbon source
[Ref.: #31113]		tween 40 ChEBI	+	carbon source
		Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #31113]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #31113]		indole ChEBI	+

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31113]		alkaline phosphatase	+	3.1.3.1
[Ref.: #31113]		catalase	+	1.11.1.6
[Ref.: #31113]		cytochrome oxidase	+	1.9.3.1
[Ref.: #31113]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20934]	Sample type/isolated from	water from a rainwater pond in an olive tree nursery
[Ref.: #20934]	Geographic location (country and/or sea, region)	Burguillos, Seville (37° 34' 38.1714''N 5° 58' 18.5592'' W)
[Ref.: #20934]	Country	Spain
[Ref.: #20934]	Country ISO 3 Code	ESP
[Ref.: #20934]	Continent	Europe
[Ref.: #20934]	Geographic location	37.5773°/-5.9718°

[Ref.: #62932]	Sample type/isolated from	Pool water from olive tree nursery
[Ref.: #62932]	Sampling date	2006-04-01
[Ref.: #62932]	Geographic location (country and/or sea, region)	Burguillos (Seville)
[Ref.: #62932]	Country	Spain
[Ref.: #62932]	Country ISO 3 Code	ESP
[Ref.: #62932]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Pond (small)
#Host	#Plants	#Tree

What are isolation sources categories?

Global distribution of 16S sequence EU336941 (>99% sequence identity) for Chryseobacterium hispalense from Microbeatlas

Aquatic Samples	1277
Soil Samples	557
Animal Samples	1922
Plant Samples	508
Total Samples	4264

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20934]	Chryseobacterium hispalense DSM 25574 16S ribosomal RNA gene, partial sequence	EU336941	1480	ENA	491205 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chryseobacterium hispalense DSM 25574	GCA_000708615	contig	GenBank	491205 tax ID	*
[Ref.: #66792]	Chryseobacterium hispalense DSM 25574	491205.5	wgs	PATRIC	491205 tax ID	*
[Ref.: #66792]	Chryseobacterium hispalense DSM 25574	2585427834	draft	JGI IMG/M	491205 tax ID	*

[Ref.: #20934]	GC-content	37.2 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31113]	GC-content	37.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chryseobacterium hispalense DSM 25574 PATRIC: 491205.5
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chryseobacterium hispalense DSM 25574 PATRIC: 491205.5
[Ref.: #69480]	gram-positive	no	98.172	yes
[Ref.: #69480]	anaerobic	no	99.312	no
[Ref.: #69480]	halophile	no	94.33	no
[Ref.: #69480]	spore-forming	no	96.358	no
[Ref.: #69480]	glucose-util	yes	87.274	yes
[Ref.: #69480]	aerobic	yes	87.9	yes
[Ref.: #69480]	motile	no	90.906	yes
[Ref.: #69480]	thermophile	no	98.795	yes
[Ref.: #69480]	flagellated	no	96.211	yes
[Ref.: #69480]	glucose-ferment	no	92.357	no

Availability in culture collections External links

Culture collection no.

DSM 25574, CCUG 63019

SI-ID 402619

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium hispalense sp. nov., a plant-growth-promoting bacterium isolated from a rainwater pond in an olive plant nursery, and emended descriptions of Chryseobacterium defluvii, Chryseobacterium indologenes, Chryseobacterium wanjuense and Chryseobacterium gregarium.	Montero-Calasanz MDC, Goker M, Rohde M, Sproer C, Schumann P, Busse HJ, Schmid M, Tindall BJ, Klenk HP, Camacho M	Int J Syst Evol Microbiol	10.1099/ijs.0.052456-0	2013	*
Phylogeny	Chryseobacterium cheonjiense sp. nov., isolated from forest soil.	Chaudhary DK, Dahal RH, Kim DU, Kim J	Arch Microbiol	10.1007/s00203-020-02065-w	2020	*
Phylogeny	Chryseobacterium nepalense sp. nov., isolated from oil-contaminated soil.	Chaudhary DK, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001680	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20934

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25574

#31113

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27442 (see below)

#62932 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 63019

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88012

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402619.1 )

#27442

IJSEM 4386 2013 ( DOI 10.1099/ijs.0.052456-0 , PubMed 23907217 )

* These data were automatically processed and therefore are not curated

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