Name: Thermoanaerobacter pentosaceus DTU01
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23330

Type strain:

Species: Thermoanaerobacter pentosaceus

Strain Designation: DTU01

Culture col. no.: DSM 25963, CECT 8142, KCTC 4529, VKM B-2752

Strain history: <- A. Tomás, Tech. Univ. of Denmark DTU, Lyngby; DTU01 <- A. Tomás {2009}

NCBI tax ID(s): 694059 (species)

SI-ID 390303

DSM 25963, KCTC 4529, VKM B-2752, CECT 8142

Section

Thermoanaerobacter pentosaceus DTU01 is an anaerobe, spore-forming, thermophilic bacterium that produces alcohol and was isolated from continuously stirred tank reactor for hydrogen production fed with household waste.

alcohol production
Gram-negative
rod-shaped
spore-forming
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Thermoanaerobacterales*
	Family	*Thermoanaerobacteraceae*
	Genus	*Thermoanaerobacter*
	Species	**Thermoanaerobacter pentosaceus**
	Full Scientific Name (LPSN)	Thermoanaerobacter pentosaceus Tomás et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30819]	Gram stain	negative

[Ref.: #30819]	Cell length	1.25 µm

[Ref.: #30819]	Cell width	0.5 µm

[Ref.: #30819]	Cell shape	rod-shaped

[Ref.: #30819]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19364]

Culture medium

THERMOANAEROBACTER (BA) MEDIUM (DSMZ Medium 671)

[Ref.: #19364]

Culture medium growth

[Ref.: #19364]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19364]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #19364]	growth	70 °C
[Ref.: #30819]	growth	50-80 °C
[Ref.: #30819]	optimum	70 °C

[Ref.: #19364]	Temperature range	thermophilic
[Ref.: #30819]	Temperature range	hyperthermophilic
[Ref.: #30819]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #30819]			optimum	7
[Ref.: #30819]			growth	5.36-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19364]	Oxygen tolerance	anaerobe
[Ref.: #30819]	Oxygen tolerance	anaerobe

[Ref.: #30819]

Ability of spore formation

yes

[Ref.: #19364]

Name of produced compound

ethanol

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30819]		NaCl		growth	0-4	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30819]	arabinose ChEBI	+	carbon source
[Ref.: #30819]	cellobiose ChEBI	+	carbon source
[Ref.: #30819]	fructose ChEBI	+	carbon source
[Ref.: #30819]	galactose ChEBI	+	carbon source
[Ref.: #30819]	glucose ChEBI	+	carbon source
[Ref.: #30819]	lactose ChEBI	+	carbon source
[Ref.: #30819]	mannitol ChEBI	+	carbon source
[Ref.: #30819]	mannose ChEBI	+	carbon source
[Ref.: #30819]	melibiose ChEBI	+	carbon source
[Ref.: #30819]	sucrose ChEBI	+	carbon source
[Ref.: #30819]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19364]	Sample type/isolated from	continuously stirred tank reactor for hydrogen production fed with household waste
[Ref.: #19364]	Country	Denmark
[Ref.: #19364]	Country ISO 3 Code	DNK
[Ref.: #19364]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	#Container (Reservoir)
#Engineered	#Industrial	#Industrial production

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19364]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19364]	Thermoanaerobacter pentosaceus strain DTU01 16S ribosomal RNA gene, partial sequence	GU176611	1560	ENA	694059 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermoanaerobacter pentosaceus DSM 25963	2926563151	draft	JGI IMG/M	694059 tax ID	*

[Ref.: #19364]	GC-content	34.2 mol%	sequence analysis
[Ref.: #30819]	GC-content	34.2 mol%

Availability in culture collections External links

[Ref.: #19364]

Culture collection no.

DSM 25963, CECT 8142, KCTC 4529, VKM B-2752

[Ref.: #87547]

SI-ID 390303

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermoanaerobacter pentosaceus sp. nov., an anaerobic, extremely thermophilic, high ethanol-yielding bacterium isolated from household waste.	Tomas AF, Karakashev D, Angelidaki I	Int J Syst Evol Microbiol	10.1099/ijs.0.045211-0	2012	*

References

#19364

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25963

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30819

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27150 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#87547

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID390303.1 )

#27150

IJSEM 2396 2013 ( DOI 10.1099/ijs.0.045211-0 , PubMed 23178727 )

* These data were automatically processed and therefore are not curated

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