Name: Sphingobacterium spiritivorum D7529
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 23260

Type strain:

Species: Sphingobacterium spiritivorum

Strain Designation: D7529, F8081

Culture col. no.: DSM 11687, CDC D7529, IFO 14975, NBRC 14975, NCTC 12113, CCUG 26765, LMG 11523, JCM 21154, IAM 14314, CIP 103339

Strain history: CIP <- 1989, NCTC: strain F8081 <- CDC: strain D7529

NCBI tax ID(s): 258 (species)

SI-ID 13932

LMG 11523, CCUG 26765, IFO 14975, JCM 7636, NCTC 12113, ATCC 49272, CIP 103339, NBRC 14975, IAM 14314, JCM 21154, DSM 11687

Special Collections

Other strains from Sphingobacterium spiritivorum

Section

Sphingobacterium spiritivorum D7529 is an obligate aerobe, Gram-negative bacterium that was isolated from sputum.

Gram-negative
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Sphingobacterium*
	Species	**Sphingobacterium spiritivorum**
	Full Scientific Name (LPSN)	Sphingobacterium spiritivorum (Holmes et al. 1982) Yabuuchi et al. 1983

	Synonym	Flavobacterium spiritivorum
	Synonym	Flavobacterium yabuuchiae

Information on morphological and physiological properties Morphology

[Ref.: #123266]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.604

[Ref.: #123266]	Cell shape	rod-shaped

[Ref.: #123266]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18918]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #18918]

Culture medium growth

[Ref.: #18918]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18918]

Culture medium composition

expand / minimize

[Ref.: #35537]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #35537]

Culture medium growth

[Ref.: #35537]

Culture medium composition

expand / minimize

[Ref.: #123266]

Culture medium

CIP Medium 3

[Ref.: #123266]

Culture medium growth

[Ref.: #123266]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #123266]

Culture medium

CIP Medium 72

[Ref.: #123266]

Culture medium growth

[Ref.: #123266]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #18918]	growth	28 °C
[Ref.: #35537]	growth	30 °C
[Ref.: #67770]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #123266]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #123266]		nitrate ChEBI	-	reduction
[Ref.: #123266]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #123266]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123266]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123266]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #123266]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123266]	7508	-	+	+	+	-	+	+	-	+	-	+	+	+	-	-	+	+	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18918]	Sample type/isolated from	sputum
[Ref.: #18918]	Country	USA
[Ref.: #18918]	Country ISO 3 Code	USA
[Ref.: #18918]	Continent	North America

[Ref.: #48559]	Sample type/isolated from	Human sputum
[Ref.: #48559]	Country	USA
[Ref.: #48559]	Country ISO 3 Code	USA
[Ref.: #48559]	Continent	North America

[Ref.: #123266]	Sample type/isolated from	Human, Sputum
[Ref.: #123266]	Geographic location (country and/or sea, region)	Maine
[Ref.: #123266]	Country	United States of America
[Ref.: #123266]	Country ISO 3 Code	USA
[Ref.: #123266]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host Body Product

#Fluids

#Sputum

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB680729 (>99% sequence identity) for Sphingobacterium spiritivorum subclade from Microbeatlas

Aquatic Samples	1560
Soil Samples	926
Animal Samples	4723
Plant Samples	553
Total Samples	7762

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18918]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #123266]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Flavobacterium yabuuchiae 16S ribosomal RNA	D14021	1272	GenBank ENA	258 tax ID	*
[Ref.: #20218]	Sphingobacterium spiritivorum gene for 16S rRNA, partial sequence, strain: NBRC 14975	AB680729	1448	GenBank ENA	258 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphingobacterium spiritivorum strain FDAARGOS_1145	258.10	complete	PATRIC	258 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sphingobacterium spiritivorum strain FDAARGOS_1145 strain Not applicable PATRIC: 258.10
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphingobacterium spiritivorum strain FDAARGOS_1145 strain Not applicable PATRIC: 258.10
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.604	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.644	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	85.812	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	84.269	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.981	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	85.5	no

Availability in culture collections External links

[Ref.: #18918]

Culture collection no.

DSM 11687, CDC D7529, IFO 14975, NBRC 14975, NCTC 12113, CCUG 26765, LMG 11523, JCM 21154, IAM 14314, CIP 103339

[Ref.: #87483]

SI-ID 13932

References

#18918

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11687

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35537 ; Curators of the CIP;
#48559 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 26765

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87483

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13932.1 )

#123266 Collection of Institut Pasteur ; Curators of the CIP; CIP 103339
* These data were automatically processed and therefore are not curated

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Sphingobacterium spiritivorum strain FDAARGOS_1145 strain Not applicable

Sphingobacterium spiritivorum strain FDAARGOS_1145 strain Not applicable

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