Name: Sphingobacterium versatilis KM 2138
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14117

Type strain:

Species: Sphingobacterium versatilis

Strain Designation: KM 2138

Culture col. no.: DSM 2582, ATCC 33300, GIFU 2138

Strain history: <- ATCC <- E. Yabuuchi, KM 2138 (GIFU 2138) <- W. Minamide (Flavobacterium sp. No. 6)

NCBI tax ID(s): 525372 (strain), 258 (species)

SI-ID 311050

LMG 13144, ATCC 33300, CCUG 15910, DSM 2582, LMG 8348

Special Collections

DSMZ

Section

Sphingobacterium versatilis KM 2138 is a Gram-negative bacterium that was isolated from vaginal secretion.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	"Sphingobacterium"
	Species	"Sphingobacterium versatilis"
	Full Scientific Name (LPSN)	Sphingobacterium versatilis Yabuuchi et al. 1981

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.604

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1132]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #1132]

Culture medium growth

[Ref.: #1132]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1132]

Culture medium composition

expand / minimize

[Ref.: #1132]

Culture medium

CY-AGAR (DSMZ Medium 67)

[Ref.: #1132]

Culture medium growth

[Ref.: #1132]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1132]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1132]			growth	28 °C
[Ref.: #1132]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1132]	Sample type/isolated from	vaginal secretion
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Urogenital tract	#Vagina
#Host Body Product	#Urogenital tract	#Vaginal secretion

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ459411 (>99% sequence identity) for Sphingobacterium spiritivorum subclade from Microbeatlas

Aquatic Samples	1560
Soil Samples	926
Animal Samples	4723
Plant Samples	553
Total Samples	7762

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1132]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Sphingobacterium spiritivorum partial 16S rRNA gene, strain DSM 2582	AJ459411	1476	GenBank ENA	258 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphingobacterium spiritivorum ATCC 33300	GCA_000159515	scaffold	GenBank ENA	525372 tax ID	*
[Ref.: #66792]	Sphingobacterium spiritivorum ATCC 33300	525372.3	wgs	PATRIC	525372 tax ID	*
[Ref.: #66792]	Sphingobacterium spiritivorum strain FDAARGOS_1146	258.9	complete	PATRIC	258 tax ID	*
[Ref.: #66792]	Sphingobacterium spiritivorum ATCC 33300	643886135	draft	JGI IMG/M	525372 tax ID	*

[Ref.: #1132]

GC-content

39.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sphingobacterium spiritivorum strain FDAARGOS_1146 strain Not applicable PATRIC: 258.9
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphingobacterium spiritivorum strain FDAARGOS_1146 strain Not applicable PATRIC: 258.9
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.604	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.641	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	86.812	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	84.592	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	86.5	no

Availability in culture collections External links

[Ref.: #1132]

Culture collection no.

DSM 2582, ATCC 33300, GIFU 2138

[Ref.: #83284]

SI-ID 311050

References

#1132

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2582

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83284

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID311050.1 )

* These data were automatically processed and therefore are not curated

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Sphingobacterium spiritivorum strain FDAARGOS_1146 strain Not applicable

Sphingobacterium spiritivorum strain FDAARGOS_1146 strain Not applicable

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