Name: Sphingobacterium spiritivorum E7288
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14118

Type strain:

Species: Sphingobacterium spiritivorum

Strain Designation: E7288, 29-83

Culture col. no.: DSM 11722, ATCC 33861, CDC E7288, GIFU 3101, JCM 1277, NCTC 11386, CCUG 13224, CCM 4603, CIP 100542, IAM 14210, IFO 14948, JCM 6897, LMG 8347, NBRC 14948, NRRL B-23392

Strain history: CIP <- 1983, C. Richard, Inst. Pasteur, Paris, France: strain 29-83 <- GIFU <- NCTC <- CDC: strain E7288 <- Kansas Dept. Hlth., USA <- Univ. Kansas Med. Center, USA, Flavobacterium spiritivorum

NCBI tax ID(s): 525373 (strain), 258 (species)

SI-ID 4981

LMG 8347, ATCC 33861, CCUG 13224, CIP 100542, IFO 14948, JCM 1277, NCTC 11386, IAM 14210, JCM 6897, CCM 4603, DSM 11722, NBRC 14948, KACC 10895, NRRL B-23392

Special Collections

Other strains from Sphingobacterium spiritivorum

Section

Sphingobacterium spiritivorum E7288 is an aerobe bacterium that was isolated from intrauterine specimen.

aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Sphingobacterium*
	Species	**Sphingobacterium spiritivorum**
	Full Scientific Name (LPSN)	Sphingobacterium spiritivorum (Holmes et al. 1982) Yabuuchi et al. 1983

	Synonym	Flavobacterium spiritivorum
	Synonym	Flavobacterium yabuuchiae

Information on morphological and physiological properties Morphology

[Ref.: #123265]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.604

[Ref.: #123265]	Cell shape	rod-shaped

[Ref.: #123265]	Motility	no
[Ref.: #25081]	Motility	no

[Ref.: #123265]	Pigment production	no
[Ref.: #123265]	Pigment name	Flexirubin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4454]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #4454]

Culture medium growth

[Ref.: #4454]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4454]

Culture medium composition

expand / minimize

[Ref.: #42121]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #42121]

Culture medium growth

[Ref.: #42121]

Culture medium composition

expand / minimize

[Ref.: #123265]

Culture medium

CIP Medium 3

[Ref.: #123265]

Culture medium growth

[Ref.: #123265]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #123265]

Culture medium

CIP Medium 72

[Ref.: #123265]

Culture medium growth

[Ref.: #123265]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #4454]		growth	28 °C
[Ref.: #25081]		growth	15-30 °C
[Ref.: #42121]		growth	30 °C
[Ref.: #45917]		growth	30-37 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #123265]		growth	5-37 °C
[Ref.: #123265]	no	growth	41 °C
[Ref.: #123265]	no	growth	45 °C

	pH	Kind of pH		pH
[Ref.: #25081]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #45917]	Oxygen tolerance	aerobe
[Ref.: #123265]	Oxygen tolerance	obligate aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Salt	Tested relation		Salt conc.
[Ref.: #25081]	NaCl		growth	0-3.5	%
[Ref.: #123265]	NaCl		growth	0-4	%
[Ref.: #123265]	NaCl	no	growth	6	%
[Ref.: #123265]	NaCl	no	growth	8	%
[Ref.: #123265]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25081]	2-hydroxybutyrate ChEBI	+	respiration
[Ref.: #25081]	2-oxobutanoate ChEBI	-	respiration
[Ref.: #25081]	2-oxopentanoate ChEBI	-	respiration
[Ref.: #25081]	4-hydroxy-L-proline ChEBI	-	respiration
[Ref.: #25081]	acetate ChEBI	-	respiration
[Ref.: #25081]	adipate ChEBI	-	assimilation
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #25081]	alpha-cyclodextrin ChEBI	+	respiration
[Ref.: #25081]	alpha-D-glucose ChEBI	+	respiration
[Ref.: #25081]	arabinose ChEBI	-	assimilation
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE, API ID32E
[Ref.: #25081]	cellobiose ChEBI	+	respiration
[Ref.: #68374]	cellobiose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #25081]	citrate ChEBI	-	assimilation
[Ref.: #25081]	citrate ChEBI	+	respiration
[Ref.: #123265]	citrate ChEBI	-	carbon source
[Ref.: #25081]	D-arabitol ChEBI	+	respiration
[Ref.: #68374]	D-arabitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #25081]	D-fructose ChEBI	+	respiration
[Ref.: #25081]	D-galactose ChEBI	+	respiration
[Ref.: #25081]	D-galacturonic acid ChEBI	+	respiration
[Ref.: #68374]	D-galacturonic acid ChEBI	-	builds acid from	* from API ID32E
[Ref.: #25081]	D-gluconate ChEBI	+	respiration
[Ref.: #25081]	D-glucosaminic acid ChEBI	+	respiration
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68374]	D-glucose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #25081]	D-glucose 6-phosphate ChEBI	+	respiration
[Ref.: #25081]	D-mannitol ChEBI	+	respiration
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68374]	D-mannitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #25081]	D-mannose ChEBI	+	respiration
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #25081]	D-psicose ChEBI	+	respiration
[Ref.: #25081]	D-sorbitol ChEBI	+	respiration
[Ref.: #25081]	decanoate ChEBI	-	assimilation
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #25081]	dextrin ChEBI	+	respiration
[Ref.: #123265]	esculin ChEBI	+	hydrolysis
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #25081]	gentiobiose ChEBI	+	respiration
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #25081]	glucose ChEBI	-	fermentation
[Ref.: #25081]	glucose ChEBI	+	assimilation
[Ref.: #25081]	glucose 1-phosphate ChEBI	+	respiration
[Ref.: #25081]	glucuronamide ChEBI	+	respiration
[Ref.: #25081]	glycerol ChEBI	+	respiration
[Ref.: #25081]	glycerol 1-phosphate ChEBI	+	respiration
[Ref.: #25081]	glycogen ChEBI	-	respiration
[Ref.: #25081]	glycyl L-aspartic acid ChEBI	+	respiration
[Ref.: #25081]	glycyl-l-glutamate ChEBI	-	respiration
[Ref.: #123265]	hippurate ChEBI	-	hydrolysis
[Ref.: #25081]	L-arabinose ChEBI	+	respiration
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68374]	L-arabinose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	L-arabitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #25081]	L-asparagine ChEBI	-	respiration
[Ref.: #25081]	L-aspartate ChEBI	-	respiration
[Ref.: #25081]	L-fucose ChEBI	+	respiration
[Ref.: #25081]	L-glutamate ChEBI	+	respiration
[Ref.: #25081]	L-ornithine ChEBI	-	respiration
[Ref.: #25081]	L-proline ChEBI	-	respiration
[Ref.: #68374]	L-rhamnose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #25081]	L-serine ChEBI	-	respiration
[Ref.: #25081]	lactate ChEBI	+	respiration
[Ref.: #25081]	lactose ChEBI	+	respiration
[Ref.: #25081]	lactulose ChEBI	-	respiration
[Ref.: #68374]	lysine ChEBI	-	degradation	* from API ID32E
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #123265]	malonate ChEBI	-	assimilation
[Ref.: #68374]	malonate ChEBI	-	assimilation	* from API ID32E
[Ref.: #25081]	maltose ChEBI	+	assimilation
[Ref.: #25081]	maltose ChEBI	+	respiration
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68374]	maltose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #25081]	mannitol ChEBI	-	assimilation
[Ref.: #25081]	mannose ChEBI	+	assimilation
[Ref.: #25081]	melibiose ChEBI	+	respiration
[Ref.: #25081]	methyl beta-D-glucopyranoside ChEBI	+	respiration
[Ref.: #25081]	monomethyl succinate ChEBI	-	respiration
[Ref.: #68374]	myo-inositol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #25081]	N-acetylgalactosamine ChEBI	+	respiration
[Ref.: #25081]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #25081]	N-acetylglucosamine ChEBI	+	respiration
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #25081]	nitrate ChEBI	-	reduction
[Ref.: #123265]	nitrate ChEBI	-	builds gas from
[Ref.: #123265]	nitrate ChEBI	-	reduction
[Ref.: #123265]	nitrate ChEBI	-	respiration
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #123265]	nitrite ChEBI	-	builds gas from
[Ref.: #123265]	nitrite ChEBI	-	reduction
[Ref.: #68374]	ornithine ChEBI	-	degradation	* from API ID32E
[Ref.: #68374]	palatinose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #25081]	phenylacetate ChEBI	-	assimilation
[Ref.: #68374]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API ID32E
[Ref.: #25081]	potassium gluconate ChEBI	-	assimilation
[Ref.: #25081]	propionate ChEBI	-	respiration
[Ref.: #25081]	raffinose ChEBI	+	respiration
[Ref.: #68374]	ribitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	sorbitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #25081]	sucrose ChEBI	+	respiration
[Ref.: #68374]	sucrose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #25081]	threonine ChEBI	-	respiration
[Ref.: #25081]	trehalose ChEBI	+	respiration
[Ref.: #68374]	trehalose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #25081]	tryptophan ChEBI	-	energy source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE, API ID32E
[Ref.: #25081]	turanose ChEBI	-	respiration
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE, API ID32E
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #123265]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite	Production
[Ref.: #25081]	indole ChEBI	no
[Ref.: #123265]	indole ChEBI	no
[Ref.: #68374]	indole ChEBI	no	* from API ID32E, API 20NE

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #123265]	acetoin ChEBI	-
[Ref.: #25081]	glucose ChEBI		-
[Ref.: #123265]	glucose ChEBI		-
[Ref.: #25081]	indole ChEBI			-
[Ref.: #68374]	indole ChEBI			-	* from API ID32E, API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #25081]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123265]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #25081]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #25081]	alpha-fucosidase	+	3.2.1.51
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #25081]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68374]	alpha-galactosidase	+	3.2.1.22	* from API ID32E, API zym
[Ref.: #25081]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68374]	alpha-glucosidase	+	3.2.1.20	* from API ID32E, API zym
[Ref.: #68374]	alpha-maltosidase	+		* from API ID32E
[Ref.: #25081]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123265]	amylase	-
[Ref.: #25081]	arginine dihydrolase	-	3.5.3.6
[Ref.: #68374]	arginine dihydrolase	-	3.5.3.6	* from API ID32E, API 20NE
[Ref.: #25081]	beta-galactosidase	+	3.2.1.23
[Ref.: #123265]	beta-galactosidase	-	3.2.1.23
[Ref.: #68374]	beta-galactosidase	+	3.2.1.23	* from API ID32E
[Ref.: #25081]	beta-glucosidase	+	3.2.1.21
[Ref.: #68374]	beta-glucosidase	+	3.2.1.21	* from API ID32E, API 20NE
[Ref.: #25081]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68374]	beta-glucuronidase	+	3.2.1.31	* from API ID32E
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123265]	caseinase	-	3.4.21.50
[Ref.: #25081]	catalase	+	1.11.1.6
[Ref.: #123265]	catalase	+	1.11.1.6
[Ref.: #25081]	chymotrypsin	+	3.4.4.5
[Ref.: #25081]	cystine arylamidase	+	3.4.11.3
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #25081]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #123265]	DNase	+
[Ref.: #25081]	esterase	-
[Ref.: #25081]	esterase (C 4)	+
[Ref.: #25081]	esterase lipase (C 8)	+
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #123265]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #25081]	gelatinase	-
[Ref.: #123265]	gelatinase	-
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68374]	L-aspartate arylamidase	+	3.4.11.21	* from API ID32E
[Ref.: #123265]	lecithinase	-
[Ref.: #25081]	leucine arylamidase	+	3.4.11.1
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #123265]	lipase	-
[Ref.: #68374]	lipase	+		* from API ID32E
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123265]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68374]	lysine decarboxylase	-	4.1.1.18	* from API ID32E
[Ref.: #25081]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #68374]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API ID32E, API zym
[Ref.: #25081]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123265]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #68374]	ornithine decarboxylase	-	4.1.1.17	* from API ID32E
[Ref.: #123265]	oxidase	+
[Ref.: #123265]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #123265]	protease	-
[Ref.: #25081]	trypsin	+	3.4.21.4
[Ref.: #25081]	tryptophan deaminase	-	4.1.99.1
[Ref.: #123265]	tryptophan deaminase	-
[Ref.: #123265]	tween esterase	+
[Ref.: #25081]	urease	+	3.5.1.5
[Ref.: #123265]	urease	+	3.5.1.5
[Ref.: #68374]	urease	-	3.5.1.5	* from API ID32E, API 20NE
[Ref.: #25081]	valine arylamidase	+
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #45917]

Fatty acid	Percentage	ECL
C15:0 ISO	28	14.621
C16:1 ω7c	23.7	15.819
C16:1 ω7c/C15:0 ISO 2OH	18	15.85
C17:0 iso 3OH	10.7	18.161
C16:0	6.1	16
C16:0 3OH	5.2	17.52
C14:0	2.2	14
C15:0 ISO 3OH	2.2	16.135
C17:1 ω9c ISO	1.5	16.416
C16:1 ω5c	1.3	15.908
C17:1 ISO I/C16:0 DMA	1.2	16.481

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #45917]	7213	-	-	-	-	-	+	-	+	+	-	+	-	+	+	-	-	-	-	-	-	+

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #123265]	31	not determinedn.d.	+	-	-	+	+	-	+	+	-	+	+	+	+	+	+	+	+	+	+	-	-	+	+	+	-	+	+	-	-	-	-	+	-	-	+	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-

API® ID32E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Ornithine decarboxylaseODC	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Urease/urea hydrolysisURE	Acid from L-arabitolLARL	Acid from D-galacturonic acidGAT	Acid from 5-Ketogluconate5KG	LipaseLIP	Phenol red (Acidification)RP	beta-Glucosidasebeta GLU	Acid from D-mannitolMAN	Acid from maltoseMAL	Acid from D-adonitolADO	Acid from palatinosePLE	beta-Glucuronidasebeta GUR	MalonateMNT	Indole productionIND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta-Galactosidasebeta GAL	Acid from D-glucoseGLU	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	alpha-Glucosidasealpha GLU	alpha-Galactosidasealpha GAL	Acid from trehaloseTRE	Acid from L-rhamnoseRHA	Acid from inositolINO	Acid from cellobioseCEL	Acid from sorbitolSOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
[Ref.: #45917]	636	-	-	-	-	-	-	-	+	+	+	-	-	-	-	+	-	-	+	+	-	-	-	-	+	+	-	-	-	-	-	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #45917]	3586	-	+	-	+	-	+	+	-	-	-	+	+	+	-	-	+	-	+	-	+
[Ref.: #123265]	6600	-	+	+	+	-	+	+	-	+	-	+	+	+	+	-	+	+	+	-	+

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	tetrahydrofolate metabolism	100	14 of 14
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	teichoic acid biosynthesis	100	1 of 1
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	ubiquinone biosynthesis	85.71	6 of 7
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	metabolism of amino sugars and derivatives	80	4 of 5
[Ref.: #66794]	lipoate biosynthesis	80	4 of 5
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	leucine metabolism	76.92	10 of 13
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	75	6 of 8
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	lactate fermentation	75	3 of 4
[Ref.: #66794]	glutamate and glutamine metabolism	75	21 of 28
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	purine metabolism	73.4	69 of 94
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	vitamin B6 metabolism	72.73	8 of 11
[Ref.: #66794]	pentose phosphate pathway	72.73	8 of 11
[Ref.: #66794]	citric acid cycle	71.43	10 of 14
[Ref.: #66794]	pyrimidine metabolism	71.11	32 of 45
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	starch degradation	70	7 of 10
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	isoprenoid biosynthesis	69.23	18 of 26
[Ref.: #66794]	degradation of sugar acids	68	17 of 25
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	cysteine metabolism	66.67	12 of 18
[Ref.: #66794]	histidine metabolism	65.52	19 of 29
[Ref.: #66794]	methionine metabolism	65.38	17 of 26
[Ref.: #66794]	tyrosine metabolism	64.29	9 of 14
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	proline metabolism	63.64	7 of 11
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	alanine metabolism	62.07	18 of 29
[Ref.: #66794]	lipid metabolism	61.29	19 of 31
[Ref.: #66794]	degradation of hexoses	61.11	11 of 18
[Ref.: #66794]	arachidonate biosynthesis	60	3 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	60	3 of 5
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
[Ref.: #66794]	glutathione metabolism	57.14	8 of 14
[Ref.: #66794]	lysine metabolism	57.14	24 of 42
[Ref.: #66794]	non-pathway related	55.26	21 of 38
[Ref.: #66794]	tryptophan metabolism	55.26	21 of 38
[Ref.: #66794]	arginine metabolism	54.17	13 of 24
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	53.85	7 of 13
[Ref.: #66794]	urea cycle	53.85	7 of 13
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	androgen and estrogen metabolism	50	8 of 16
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	oxidative phosphorylation	47.25	43 of 91
[Ref.: #66794]	3-phenylpropionate degradation	46.67	7 of 15
[Ref.: #66794]	degradation of pentoses	46.43	13 of 28
[Ref.: #66794]	carotenoid biosynthesis	45.45	10 of 22
[Ref.: #66794]	metabolism of disaccharids	45.45	5 of 11
[Ref.: #66794]	reductive acetyl coenzyme A pathway	42.86	3 of 7
[Ref.: #66794]	ascorbate metabolism	40.91	9 of 22
[Ref.: #66794]	vitamin K metabolism	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	glycogen metabolism	40	2 of 5
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	phenol degradation	35	7 of 20
[Ref.: #66794]	molybdenum cofactor biosynthesis	33.33	3 of 9
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	33.33	2 of 6
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	polyamine pathway	30.43	7 of 23
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	butanoate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	chlorophyll metabolism	22.22	4 of 18
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4454]	Sample type/isolated from	intrauterine specimen

[Ref.: #45917]	Sample type/isolated from	Intra uterine
[Ref.: #45917]	Geographic location (country and/or sea, region)	Kansas
[Ref.: #45917]	Country	USA
[Ref.: #45917]	Country ISO 3 Code	USA
[Ref.: #45917]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Intrauterine specimens
[Ref.: #67770]	Geographic location (country and/or sea, region)	KS
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America

[Ref.: #123265]	Sample type/isolated from	Human, Intra uterine specimen
[Ref.: #123265]	Geographic location (country and/or sea, region)	Kansas
[Ref.: #123265]	Country	United States of America
[Ref.: #123265]	Country ISO 3 Code	USA
[Ref.: #123265]	Continent	North America
* marker position based on {}

Isolation sources categories

#Infection	#Patient	#Specimen
#Host Body-Site	#Urogenital tract	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF090267 (>99% sequence identity) for Sphingobacterium spiritivorum subclade from Microbeatlas

Aquatic Samples	1560
Soil Samples	926
Animal Samples	4723
Plant Samples	553
Total Samples	7762

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4454]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #123265]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4454]	Sphingobacterium spiritivorum strain NCTC 11386 16S ribosomal RNA gene, partial sequence	EF090267	1445	GenBank ENA	258 tax ID
[Ref.: #20218]	Sphingobacterium spiritivorum 16S ribosomal RNA gene, partial sequence	M58778	1473	GenBank ENA	258 tax ID	*
[Ref.: #20218]	Sphingobacterium spiritivorum 16S ribosomal RNA	D14026	1285	GenBank ENA	258 tax ID	*
[Ref.: #20218]	Sphingobacterium spiritivorum gene for 16S rRNA, partial sequence, strain: NBRC 14948	AB680718	1448	GenBank ENA	258 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sphingobacterium spiritivorum NCTC11386	GCA_900457435	contig	GenBank ENA	258 tax ID
[Ref.: #66792]	Sphingobacterium spiritivorum ATCC 33861	525373.3	wgs	PATRIC	525373 tax ID	*
[Ref.: #66792]	Sphingobacterium spiritivorum strain FDAARGOS_1144	258.11	complete	PATRIC	258 tax ID	*
[Ref.: #66792]	Sphingobacterium spiritivorum strain NCTC11386	258.5	wgs	PATRIC	258 tax ID	*
[Ref.: #66792]	Sphingobacterium spiritivorum NCTC 11386	2849498117	draft	JGI IMG/M	258 tax ID	*
[Ref.: #66792]	Sphingobacterium spiritivorum ATCC 33861	2562617179	draft	JGI IMG/M	525373 tax ID	*

[Ref.: #4454]	GC-content	40.0 mol%
[Ref.: #67770]	GC-content	41 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sphingobacterium spiritivorum strain FDAARGOS_1144 strain Not applicable PATRIC: 258.11
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphingobacterium spiritivorum strain FDAARGOS_1144 strain Not applicable PATRIC: 258.11
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.604	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.811	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.812	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	84.524	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	85.5	no

Availability in culture collections External links

[Ref.: #4454]

Culture collection no.

DSM 11722, ATCC 33861, CDC E7288, GIFU 3101, JCM 1277, NCTC 11386, CCUG 13224, CCM 4603, CIP 100542, IAM 14210, IFO 14948, JCM 6897, LMG 8347, NBRC 14948, NRRL B-23392

[Ref.: #83285]

SI-ID 4981

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingobacterium anhuiense sp. nov., isolated from forest soil.	Wei W, Zhou Y, Wang X, Huang X, Lai R	Int J Syst Evol Microbiol	10.1099/ijs.0.65864-0	2008	*
Enzymology	Structural analysis of sphingophospholipids derived from Sphingobacterium spiritivorum, the type species of genus Sphingobacterium.	Naka T, Fujiwara N, Yano I, Maeda S, Doe M, Minamino M, Ikeda N, Kato Y, Watabe K, Kumazawa Y, Tomiyasu I, Kobayashi K	Biochim Biophys Acta	10.1016/j.bbalip.2003.10.010	2003	*
Pathogenicity	Bacterial ceramides and sphingophospholipids induce apoptosis of human leukaemic cells.	Minamino M, Sakaguchi I, Naka T, Ikeda N, Kato Y, Tomiyasu I, Yano I, Kobayashi K	Microbiology (Reading)	10.1099/mic.0.25922-0	2003	*

References

#4454

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11722

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#25081

W. A. H. Lai, A.,Liu, Y. C.,Hsu, Y. H.,Lin, S. Y.,Young, C. C.: Sphingobacterium cibi sp. nov., isolated from the food-waste compost and emended descriptions of Sphingobacterium spiritivorum (Holmes et al. 1982) Yabuuchi et al. 1983 and Sphingobacterium thermophilum Yabe et al. 2013. IJSEM 66: 5336 - 5344 2016 ( DOI 10.1099/ijsem.0.001517 , PubMed 27666956 )

#42121 ; Curators of the CIP;
#45917 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 13224

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#68374

Automatically annotated from API ID32E .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83285

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID4981.1 )

#123265 Collection of Institut Pasteur ; Curators of the CIP; CIP 100542
* These data were automatically processed and therefore are not curated

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Sphingobacterium spiritivorum strain FDAARGOS_1144 strain Not applicable

Sphingobacterium spiritivorum strain FDAARGOS_1144 strain Not applicable

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