Name: Sphingobacterium spiritivorum JCM 1732
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162007

Type strain:

Species: Sphingobacterium spiritivorum

Culture col. no.: JCM 1732, ATCC 35004, NCTC 11388

Strain history: NCTC 11388 <-- B. Holmes CL 48/80 <-- Univ. Leeds.

NCBI tax ID(s): 258 (species)

SI-ID 40815

ATCC 35004, NCTC 11388, JCM 1732

Other strains from Sphingobacterium spiritivorum

S. spiritivorum E7288, 29-83, DSM 11722, ATCC 33861, ... (type strain)
S. spiritivorum KM 2138, DSM 2582, ATCC 33300, ...
S. spiritivorum D7529, F8081, DSM 11687, CDC D7529, ...
S. spiritivorum 649-77, CIP 103080
S. spiritivorum Jacob, CIP 103100
S. spiritivorum D7039, CIP 103340, NCTC 12114, ...
S. spiritivorum 362P, CIP 109996
S. spiritivorum Jacob, CIP 109998
S. spiritivorum 732-82, CIP 103044
S. spiritivorum 28-78, CIP 103051
S. spiritivorum CCUG 15910, LMG 8348
S. spiritivorum CCUG 15911
S. spiritivorum CCUG 22179, CCUG 16474
S. spiritivorum CCUG 64463 B
S. spiritivorum JCM 1733, ATCC 35003, NCTC 11387

Section

Sphingobacterium spiritivorum JCM 1732 is a mesophilic, Gram-negative bacterium that was isolated from Blood of an 11 year-old female.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Sphingobacterium*
	Species	**Sphingobacterium spiritivorum**
	Full Scientific Name (LPSN)	Sphingobacterium spiritivorum (Holmes et al. 1982) Yabuuchi et al. 1983

	Synonym	Flavobacterium spiritivorum
	Synonym	Flavobacterium yabuuchiae

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.98

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Blood of an 11 year-old female
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC060920 (>99% sequence identity) for Sphingobacterium spiritivorum subclade from Microbeatlas

Aquatic Samples	1560
Soil Samples	926
Animal Samples	4723
Plant Samples	553
Total Samples	7762

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sphingobacterium spiritivorum gene for 16S ribosomal RNA, partial sequence, strain: JCM 1732	LC060920	1445	ENA	258 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sphingobacterium spiritivorum NCTC11388	GCA_900457365	contig	GenBank	258 tax ID
[Ref.: #66792]	Sphingobacterium spiritivorum strain NCTC11388	258.4	wgs	PATRIC	258 tax ID	*
[Ref.: #66792]	Sphingobacterium spiritivorum NCTC 11388	2808606755	draft	JGI IMG/M	258 tax ID	*

[Ref.: #67770]

GC-content

41.3 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sphingobacterium spiritivorum strain NCTC11388 PATRIC: 258.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphingobacterium spiritivorum strain NCTC11388 PATRIC: 258.4
[Ref.: #69480]	motile	no	92.443	no
[Ref.: #69480]	gram-positive	no	97.84	no
[Ref.: #69480]	anaerobic	no	99.203	no
[Ref.: #69480]	aerobic	yes	87.96	no
[Ref.: #69480]	halophile	no	96.128	no
[Ref.: #69480]	spore-forming	no	94.702	no
[Ref.: #69480]	glucose-util	yes	91.326	no
[Ref.: #69480]	flagellated	no	95.917	no
[Ref.: #69480]	thermophile	no	99.021	yes
[Ref.: #69480]	glucose-ferment	no	90.306	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 1732, ATCC 35004, NCTC 11388

[Ref.: #113485]

SI-ID 40815

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#113485

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID40815.1 )

* These data were automatically processed and therefore are not curated

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Sphingobacterium spiritivorum strain NCTC11388

Sphingobacterium spiritivorum strain NCTC11388

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