Name: Micromonospora sonneratiae 274745
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 23121

Type strain:

Species: Micromonospora sonneratiae

Strain Designation: 274745

Culture col. no.: DSM 45704, CCTCC AA 2012003, JCM 31037

Strain history: DSM 45704 <-- L. Li; Wuhan Univ., China; 274745.

NCBI tax ID(s): 1184706 (species)

SI-ID 404596

DSM 45704

Special Collections

Section

Micromonospora sonneratiae 274745 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from surface sterilized root of Sonneratia apetala.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Micromonospora*
	Species	**Micromonospora sonneratiae**
	Full Scientific Name (LPSN)	Micromonospora sonneratiae Li et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30748]	Gram stain	positive

[Ref.: #30748]	Motility	no

[Ref.: #69421]	Colony color	Clay brown (8003), fawn brown (8007)
[Ref.: #69421]	Cultivation medium used	ISP 2

[Ref.: #69421]	Colony color	Grey brown (8019), oyster white (1013)
[Ref.: #69421]	Cultivation medium used	suter without tyrosine

[Ref.: #69421]	Colony color	Khaki grey (7008), terra brown (8028)
[Ref.: #69421]	Cultivation medium used	suter with tyrosine

[Ref.: #69421]	Colony color	Saffron yellow (1017)
[Ref.: #69421]	Cultivation medium used	ISP 3

[Ref.: #69421]	Colony color	Saffron yellow (1017)
[Ref.: #69421]	Cultivation medium used	ISP 4

[Ref.: #69421]	Colony color	Saffron yellow (1017)
[Ref.: #69421]	Cultivation medium used	ISP 5

[Ref.: #69421]	Colony color	Saffron yellow (1017)
[Ref.: #69421]	Cultivation medium used	ISP 7

[Ref.: #69421]	Colony color	Sand yellow (1002), dahlia yellow (1033)
[Ref.: #69421]	Cultivation medium used	ISP 6

[Ref.: #19375]	Incubation period	3-7 days

[Ref.: #30748]	Pigment production	yes
[Ref.: #69421]	Pigment production	no
[Ref.: #69421]	Pigment name	Melanin
[Ref.: #69421]	Pigment production	no
[Ref.: #69421]	Pigment name	soluble pigment

[Ref.: #69421]	Multicellular complex forming ability	no
[Ref.: #69421]	Multicellular complex name	Aerial mycelium
[Ref.: #69421]	Medium Name (multicellularity)	ISP 2

[Ref.: #69421]	Multicellular complex forming ability	no
[Ref.: #69421]	Multicellular complex name	Aerial mycelium
[Ref.: #69421]	Medium Name (multicellularity)	ISP 3

[Ref.: #69421]	Multicellular complex forming ability	no
[Ref.: #69421]	Multicellular complex name	Aerial mycelium
[Ref.: #69421]	Medium Name (multicellularity)	ISP 4

[Ref.: #69421]	Multicellular complex forming ability	no
[Ref.: #69421]	Multicellular complex name	Aerial mycelium
[Ref.: #69421]	Medium Name (multicellularity)	ISP 5

[Ref.: #69421]	Multicellular complex forming ability	no
[Ref.: #69421]	Multicellular complex name	Aerial mycelium
[Ref.: #69421]	Medium Name (multicellularity)	ISP 6

[Ref.: #69421]	Multicellular complex forming ability	no
[Ref.: #69421]	Multicellular complex name	Aerial mycelium
[Ref.: #69421]	Medium Name (multicellularity)	ISP 7

[Ref.: #69421]	Multicellular complex forming ability	no
[Ref.: #69421]	Multicellular complex name	Aerial mycelium
[Ref.: #69421]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69421]	Multicellular complex forming ability	no
[Ref.: #69421]	Multicellular complex name	Aerial mycelium
[Ref.: #69421]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #19375]

Caption:

Medium 554 28°C

[Ref.: #19375]

Intellectual property rights:

[Ref.: #69421]

Caption:

Plates (554, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69421]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69421]

Caption:

Plates (554, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69421]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19375]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #19375]

Culture medium growth

[Ref.: #19375]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #19375]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #19375]

Culture medium growth

[Ref.: #19375]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #19375]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #19375]

Culture medium growth

[Ref.: #19375]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #19375]

Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

[Ref.: #19375]

Culture medium growth

[Ref.: #19375]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19375]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #19375]	growth	28 °C
[Ref.: #30748]	growth	20-37 °C
[Ref.: #30748]	optimum	34 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #30748]			optimum	7
[Ref.: #30748]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30748]

Oxygen tolerance

aerobe

[Ref.: #30748]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30748]		NaCl		growth	0-2	%
[Ref.: #69421]		NaCl		growth	0-10	%

[Ref.: #67770]

Observation

quinones: MK-10(H₈), MK-10(H₆)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69421]	arabinose ChEBI	+	growth
[Ref.: #30748]	cellobiose ChEBI	+	carbon source
[Ref.: #69421]	cellulose ChEBI	+	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #30748]	fructose ChEBI	+	carbon source
[Ref.: #69421]	fructose ChEBI	+/-	growth
[Ref.: #30748]	galactose ChEBI	+	carbon source
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #30748]	glucose ChEBI	+	carbon source
[Ref.: #69421]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69421]	inositol ChEBI	+	growth
[Ref.: #30748]	lactose ChEBI	+	carbon source
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30748]	mannitol ChEBI	+	carbon source
[Ref.: #69421]	mannose ChEBI	+/-	growth
[Ref.: #30748]	nitrate ChEBI	+	reduction
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #69421]	raffinose ChEBI	+	growth
[Ref.: #30748]	rhamnose ChEBI	+	carbon source
[Ref.: #69421]	rhamnose ChEBI	+	growth
[Ref.: #30748]	sucrose ChEBI	+	carbon source
[Ref.: #69421]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #30748]	xylose ChEBI	+	carbon source
[Ref.: #69421]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #30748]	gelatinase	+
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69421]	3914	+	-	-	-	-	-	+	+	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69421]	6098	not determinedn.d.	+/-	+/-	+/-	+/-	+	+/-	+/-	+/-	+	+	-	-	-	-	+	+/-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19375]	Sample type/isolated from	surface sterilized root of Sonneratia apetala
[Ref.: #19375]	Host species	Sonneratia apetala
[Ref.: #19375]	Geographic location (country and/or sea, region)	Hainan Province, Sanya
[Ref.: #19375]	Country	China
[Ref.: #19375]	Country ISO 3 Code	CHN
[Ref.: #19375]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Root of Sonneratia apetala from mangrove forest in Sanya
[Ref.: #67770]	Host species	Sonneratia apetala
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hainan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Root (Rhizome)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19375]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19375]	Micromonospora sonneratiae strain 274745 16S ribosomal RNA gene, partial sequence	JQ619535	1478	GenBank ENA	1184706 tax ID

[Ref.: #19375]	GC-content	71.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30748]	GC-content	71.6 mol%

Availability in culture collections External links

[Ref.: #19375]

Culture collection no.

DSM 45704, CCTCC AA 2012003, JCM 31037

[Ref.: #87357]

SI-ID 404596

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Micromonospora ovatispora sp. nov. isolated from mangrove soil.	Li L, Hong K	Int J Syst Evol Microbiol	10.1099/ijsem.0.000808	2015	*
Phylogeny	Micromonospora polyrhachis sp. nov., an actinomycete isolated from edible Chinese black ant (Polyrhachis vicina Roger).	Xiang W, Yu C, Liu C, Zhao J, Yang L, Xie B, Li L, Hong K, Wang X	Int J Syst Evol Microbiol	10.1099/ijs.0.055863-0	2013	*
Phylogeny	Micromonospora sonneratiae sp. nov., isolated from a root of Sonneratia apetala.	Li L, Tang YL, Wei B, Xie QY, Deng Z, Hong K	Int J Syst Evol Microbiol	10.1099/ijs.0.043570-0	2012	*

References

#19375

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45704

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30748

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27079 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69421

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#87357

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404596.1 )

#27079

IJSEM 2383 2013 ( DOI 10.1099/ijs.0.043570-0 , PubMed 23178729 )

* These data were automatically processed and therefore are not curated

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