Micromonospora sonneratiae (DSM 45704, CCTCC AA 2012003, JCM 31037)

Name: Micromonospora sonneratiae (DSM 45704, CCTCC AA 2012003, JCM 31037)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23121

Type strain

Strain Designation 274745

Culture col. no. DSM 45704 CCTCC AA 2012003 JCM 31037 274745

NCBI tax ID(s) 1184706

Special Collections DSMZ JCM Wink compendium Literature strains

Links

Micromonospora sonneratiae 274745 is an aerobe, spore-forming, mesophilic prokaryote that was isolated from surface sterilized root of Sonneratia apetala.

spore-forming Gram-positive aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 404596

JCM 31037,DSM 45704

@ref 20215

Last LPSN update 2025-12-16 09:52:35

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Micromonospora

Species Micromonospora sonneratiae

Full scientific name Micromonospora sonneratiae Li et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Motility
30748	positive

Colony morphology

@ref	Colony color	Medium used	Incubation period
69421	Clay brown (8003), fawn brown (8007)	ISP 2
19375			3-7 days
69421	Grey brown (8019), oyster white (1013)	suter without tyrosine
69421	Khaki grey (7008), terra brown (8028)	suter with tyrosine
69421	Saffron yellow (1017)	ISP 3
69421	Saffron yellow (1017)	ISP 4
69421	Saffron yellow (1017)	ISP 5
69421	Saffron yellow (1017)	ISP 7
69421	Sand yellow (1002), dahlia yellow (1033)	ISP 6

Multicellular morphology

@ref	Complex name	Medium name
69421	Aerial mycelium	ISP 2
69421	Aerial mycelium	ISP 3
69421	Aerial mycelium	ISP 4
69421	Aerial mycelium	ISP 5
69421	Aerial mycelium	ISP 6
69421	Aerial mycelium	ISP 7
69421	Aerial mycelium	suter with tyrosine
69421	Aerial mycelium	suter without tyrosine

Pigmentation

@ref	Production	Name
30748
69421		Melanin
69421		soluble pigment

Multimedia

@ref:	19375
multimedia content:	DSM_45704.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45704.jpg
caption:	Medium 554 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

@ref:	69421
multimedia content:	DSM_45704_image3.jpeg
multimedia.multimedia content:	DSM_45704_image3.jpeg
caption:	Plates (554, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

@ref:	69421
multimedia content:	DSM_45704_image4.jpeg
multimedia.multimedia content:	DSM_45704_image4.jpeg
caption:	Plates (554, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
19375	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
19375	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
19375	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
19375	N-Z-AMINE-MEDIUM (DSMZ Medium 554)	Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
19375	positive	growth	28	mesophilic
30748	positive	growth	20-37
30748	positive	optimum	34	mesophilic
67770	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
30748	positive	optimum	7
30748	positive	growth	06-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

30748

Oxygen toleranceaerobe

Spore formation

30748

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30748	NaCl	positive	growth	0-2 %
69421	NaCl	positive	growth	0-10 %

Observation

67770

Observationquinones: MK-10(H₈), MK-10(H₆)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69421	22599 ChEBI	arabinose	+	growth
30748	17057 ChEBI	cellobiose	+	carbon source
69421	62968 ChEBI	cellulose	+	growth
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
30748	28757 ChEBI	fructose	+	carbon source
69421	28757 ChEBI	fructose	+/-	growth
30748	28260 ChEBI	galactose	+	carbon source
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
30748	17234 ChEBI	glucose	+	carbon source
69421	17234 ChEBI	glucose	+	growth
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
69421	17268 ChEBI	inositol	+	growth
30748	17716 ChEBI	lactose	+	carbon source
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
30748	29864 ChEBI	mannitol	+	carbon source
69421	37684 ChEBI	mannose	+/-	growth
30748	17632 ChEBI	nitrate	+	reduction
68379	17632 ChEBI	nitrate	+	reduction	from API Coryne
69421	16634 ChEBI	raffinose	+	growth
30748	26546 ChEBI	rhamnose	+	carbon source
69421	26546 ChEBI	rhamnose	+	growth
30748	17992 ChEBI	sucrose	+	carbon source
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
69421	17992 ChEBI	sucrose	+	growth
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
30748	18222 ChEBI	xylose	+	carbon source
69421	18222 ChEBI	xylose	+	growth

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
30748	gelatinase	+
68379	gelatinase	-		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68379	urease	-	3.5.1.5	from API Coryne

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69421	+	-	-	-	-	-	+	+	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69421	not determinedn.d.	+/-	+/-	+/-	+/-	+	+/-	+/-	+/-	+	+	-	-	-	-	+	+/-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Root (Rhizome)
#Host Body-Site	#Plant	#Sterilized plant part

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
19375	surface sterilized root of Sonneratia apetala	Sonneratia apetala	Hainan Province, Sanya	China	CHN	Asia
67770	Root of Sonneratia apetala from mangrove forest in Sanya	Sonneratia apetala	Hainan Province	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
19375	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4267930v1 assembly for Micromonospora sonneratiae JCM 31037	scaffold	GCA_042679305	1184706	18.67

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
19375	Micromonospora sonneratiae strain 274745 16S ribosomal RNA gene, partial sequence	JQ619535	1478		1184706

GC content

@ref	GC-content (mol%)	Method
19375	71.6	high performance liquid chromatography (HPLC)
30748	71.6

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Micromonospora ovatispora sp. nov. isolated from mangrove soil.	Li L, Hong K	Int J Syst Evol Microbiol	10.1099/ijsem.0.000808	2015
Phylogeny	Micromonospora polyrhachis sp. nov., an actinomycete isolated from edible Chinese black ant (Polyrhachis vicina Roger).	Xiang W, Yu C, Liu C, Zhao J, Yang L, Xie B, Li L, Hong K, Wang X	Int J Syst Evol Microbiol	10.1099/ijs.0.055863-0	2013
Phylogeny	Micromonospora sonneratiae sp. nov., isolated from a root of Sonneratia apetala.	Li L, Tang YL, Wei B, Xie QY, Deng Z, Hong K	Int J Syst Evol Microbiol	10.1099/ijs.0.043570-0	2012

References

#19375	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45704
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#30748	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27079 (see below)
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69421	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Micromonospora sonneratiae (DSM 45704, CCTCC AA 2012003, JCM 31037)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042679305

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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