Micromonospora wenchangensis (DSM 45709, CCTCC AA 2012002, JCM 31038)

Name: Micromonospora wenchangensis (DSM 45709, CCTCC AA 2012002, JCM 31038)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23120

Type strain

Strain Designation 2602GPT1-05

Culture col. no. DSM 45709 CCTCC AA 2012002 JCM 31038 2602GPT1-05

NCBI tax ID(s) 1185415

Special Collections DSMZ JCM Wink compendium Literature strains

History <- J. Ren, Wuhan Univ., School of Pharmaceutical Sciences, China; 2602GPT1-05 DSM 45709 <-- J. Ren; Wuhan Univ., China; 2602GPT1-05.

Links

Micromonospora wenchangensis 2602GPT1-05 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from composite soil mangrove.

spore-forming Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400649

JCM 31038,DSM 45709

@ref 20215

Last LPSN update 2026-02-09 11:23:40

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Micromonospora

Species Micromonospora wenchangensis

Full scientific name Micromonospora wenchangensis Ren et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Confidence
30829	positive
125439	positive	99.9
125439		92.6
125438	positive	92.395

Colony morphology

@ref	Colony color	Medium used
69422	Light ivory (1015), black brown (8022)	ISP 5
69422	Ochre brown (8001), black brown (8022)	suter with tyrosine
69422	Ochre brown (8001), black brown (8022)	suter without tyrosine
69422	Pastel yellow (1034)	ISP 4
69422	Pastel yellow (1034), black brown (8022)	ISP 7
69422	Yellow orange (2000), black brown (8022)	ISP 2

Multicellular morphology

@ref	Complex name	Medium name
69422	Aerial mycelium	ISP 2
69422	Aerial mycelium	ISP 4
69422	Aerial mycelium	ISP 5
69422	Aerial mycelium	ISP 7
69422	Aerial mycelium	suter with tyrosine
69422	Aerial mycelium	suter without tyrosine

Pigmentation

@ref	Color	Name
30829
69422		melanin pigment
69422	Brown beige (1011)	soluble pigment

Multimedia

@ref:	19374
multimedia content:	DSM_45709.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45709.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

@ref:	69422
multimedia content:	DSM_45709_image3.jpeg
multimedia.multimedia content:	DSM_45709_image3.jpeg
caption:	Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

@ref:	69422
multimedia content:	DSM_45709_image4.jpeg
multimedia.multimedia content:	DSM_45709_image4.jpeg
caption:	Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
19374	N-Z-AMINE-MEDIUM (DSMZ Medium 554)	Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
19374	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
19374	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
19374	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
19374	positive	growth	28
30829	positive	growth	16-45
30829	positive	optimum	32.5
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
30829	positive	optimum	7.5
30829	positive	growth	5.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30829	aerobe
125439	obligate aerobe	99.5

Spore formation

@ref	Spore formation	Confidence
30829
125439		94.6
125438		94.05

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30829	NaCl	positive	growth	0-3 %
69422	NaCl	positive	growth	0-2.5 %

Observation

67770

Observationquinones: MK-10(H₆), MK-9(H₆), MK-9(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69422	22599 ChEBI	arabinose	+/-	growth
30829	17057 ChEBI	cellobiose	+	carbon source
69422	62968 ChEBI	cellulose	+/-	growth
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
30829	4853 ChEBI	esculin	+	hydrolysis
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
30829	28757 ChEBI	fructose	+	carbon source
69422	28757 ChEBI	fructose	+	growth
30829	28260 ChEBI	galactose	+	carbon source
68379	5291 ChEBI	gelatin	+	hydrolysis	from API Coryne
30829	17234 ChEBI	glucose	+	carbon source
69422	17234 ChEBI	glucose	+	growth
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
69422	17268 ChEBI	inositol	-	growth
30829	17716 ChEBI	lactose	+	carbon source
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
30829	17306 ChEBI	maltose	+	carbon source
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
30829	37684 ChEBI	mannose	+	carbon source
69422	37684 ChEBI	mannose	-	growth
30829	28053 ChEBI	melibiose	+	carbon source
30829	17632 ChEBI	nitrate	+	reduction
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
69422	16634 ChEBI	raffinose	+	growth
69422	26546 ChEBI	rhamnose	-	growth
30829	17992 ChEBI	sucrose	+	carbon source
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
69422	17992 ChEBI	sucrose	+	growth
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
30829	18222 ChEBI	xylose	+	carbon source
69422	18222 ChEBI	xylose	+	growth

Enzymes

@ref	Value	Activity	Ec
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68379	beta-galactosidase	+	3.2.1.23	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
30829	catalase	+	1.11.1.6
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	+		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68379	urease	-	3.5.1.5	from API Coryne

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69422	-	-	-	+	-	+	+	-	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69422	not determinedn.d.	+	+	+	+/-	+	+/-	+/-	-	-	+/-	-	+/-	+	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Biodegradation	#Composting
#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
19374	composite soil mangrove	Hainan Province, Wenchang, (19° 37.647' N, 110° 50.083' E)	China	CHN	Asia	19.6275	110.835 19.6275/110.835
67770	Mangrove soil from Wenchang	Hainan Province	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
19374	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM221043v1 assembly for Micromonospora wenchangensis CCTCC AA 2012002	contig	GCA_002210435	1185415.3	2788500614	1185415	47.11

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
19374	Micromonospora wenchangensis strain 2602GPT1-05 16S ribosomal RNA gene, partial sequence	JQ768361	1476		1185415

GC content

@ref	GC-content (mol%)	Method
19374	71.7	high performance liquid chromatography (HPLC)
30829	71.7
67770	73	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Micromonospora wenchangensis CCTCC AA 2012002
NCBI: GCA_002210435

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	94.60	no
125439	motility	BacteriaNetⓘ	no	92.60	no
125439	gram_stain	BacteriaNetⓘ	positive	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Micromonospora wenchangensis strain CCTCC AA 2012002
PATRIC: 1185415.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.40	yes
125438	anaerobic	anaerobicⓘ	no	95.79	yes
125438	spore-forming	spore-formingⓘ	yes	94.05	yes
125438	aerobic	aerobicⓘ	yes	88.10	no
125438	thermophilic	thermophileⓘ	no	93.50	yes
125438	flagellated	motile2+ⓘ	no	88.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Micromonospora humida sp. nov., exhibiting antimicrobial potential, isolated from riverside soil.	Ra JS, Kim MJ, Lee DH, Jeong JW, Kim SB	Int J Syst Evol Microbiol	10.1099/ijsem.0.005157	2021
Phylogeny	Micromonospora mangrovi sp. nov., isolated from mangrove soil.	Xie QY, Ren J, Li L, Li Y, Deng ZX, Hong K	Antonie Van Leeuwenhoek	10.1007/s10482-015-0641-x	2016
Phylogeny	Micromonospora nickelidurans sp. nov., isolated from soil from a nickel-mining site.	Lin YB, Fan MC, Guo YQ, Di XH, Dong DH, Zhang X, Wei GH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000623	2015
Phylogeny	Micromonospora wenchangensis sp. nov., isolated from mangrove soil.	Ren J, Li L, Wei B, Tang YL, Deng ZX, Sun M, Hong K	Int J Syst Evol Microbiol	10.1099/ijs.0.045476-0	2012
Phylogeny	Micromonospora antibiotica sp. nov. and Micromonospora humidisoli sp. nov., two new actinobacterial species exhibiting antimicrobial potential.	Lee DH, Ra JS, Kim MJ, Kim SB	Int J Syst Evol Microbiol	10.1099/ijsem.0.005522	2022

References

#19374	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45709
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27159	IJSEM 2389 2013 ( DOI 10.1099/ijs.0.045476-0 , PubMed 23178730 )
#30829	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27159
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69422	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Micromonospora wenchangensis (DSM 45709, CCTCC AA 2012002, JCM 31038)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002210435

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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