Name: Micromonospora wenchangensis 2602GPT1-05
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 23120

Type strain:

Species: Micromonospora wenchangensis

Strain Designation: 2602GPT1-05

Culture col. no.: DSM 45709, CCTCC AA 2012002, JCM 31038

Strain history: DSM 45709 <-- J. Ren; Wuhan Univ., China; 2602GPT1-05.

NCBI tax ID(s): 1185415 (species)

SI-ID 400649

DSM 45709

Special Collections

Section

Micromonospora wenchangensis 2602GPT1-05 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from composite soil mangrove.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Micromonospora*
	Species	**Micromonospora wenchangensis**
	Full Scientific Name (LPSN)	Micromonospora wenchangensis Ren et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30829]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %92.395

[Ref.: #30829]	Motility	no

[Ref.: #69422]	Colony color	Light ivory (1015), black brown (8022)
[Ref.: #69422]	Cultivation medium used	ISP 5

[Ref.: #69422]	Colony color	Ochre brown (8001), black brown (8022)
[Ref.: #69422]	Cultivation medium used	suter with tyrosine

[Ref.: #69422]	Colony color	Ochre brown (8001), black brown (8022)
[Ref.: #69422]	Cultivation medium used	suter without tyrosine

[Ref.: #69422]	Colony color	Pastel yellow (1034)
[Ref.: #69422]	Cultivation medium used	ISP 4

[Ref.: #69422]	Colony color	Pastel yellow (1034), black brown (8022)
[Ref.: #69422]	Cultivation medium used	ISP 7

[Ref.: #69422]	Colony color	Yellow orange (2000), black brown (8022)
[Ref.: #69422]	Cultivation medium used	ISP 2

[Ref.: #30829]	Pigment production	yes
[Ref.: #69422]	Pigment production	no
[Ref.: #69422]	Pigment name	Melanin
[Ref.: #69422]	Pigment production	yes
[Ref.: #69422]	Pigmentation color	Brown beige (1011)
[Ref.: #69422]	Pigment name	soluble pigment

[Ref.: #69422]	Multicellular complex forming ability	no
[Ref.: #69422]	Multicellular complex name	Aerial mycelium
[Ref.: #69422]	Medium Name (multicellularity)	ISP 2

[Ref.: #69422]	Multicellular complex forming ability	no
[Ref.: #69422]	Multicellular complex name	Aerial mycelium
[Ref.: #69422]	Medium Name (multicellularity)	ISP 4

[Ref.: #69422]	Multicellular complex forming ability	no
[Ref.: #69422]	Multicellular complex name	Aerial mycelium
[Ref.: #69422]	Medium Name (multicellularity)	ISP 5

[Ref.: #69422]	Multicellular complex forming ability	no
[Ref.: #69422]	Multicellular complex name	Aerial mycelium
[Ref.: #69422]	Medium Name (multicellularity)	ISP 7

[Ref.: #69422]	Multicellular complex forming ability	no
[Ref.: #69422]	Multicellular complex name	Aerial mycelium
[Ref.: #69422]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69422]	Multicellular complex forming ability	no
[Ref.: #69422]	Multicellular complex name	Aerial mycelium
[Ref.: #69422]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #19374]

Caption:

Medium 65 28°C

[Ref.: #19374]

Intellectual property rights:

[Ref.: #69422]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69422]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69422]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69422]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19374]

Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

[Ref.: #19374]

Culture medium growth

[Ref.: #19374]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #19374]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #19374]

Culture medium growth

[Ref.: #19374]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #19374]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #19374]

Culture medium growth

[Ref.: #19374]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #19374]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #19374]

Culture medium growth

[Ref.: #19374]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19374]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #19374]	growth	28 °C
[Ref.: #30829]	growth	16-45 °C
[Ref.: #30829]	optimum	32.5 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #30829]			optimum	7.5
[Ref.: #30829]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30829]

Oxygen tolerance

aerobe

[Ref.: #30829]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %94.05
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30829]		NaCl		growth	0-3	%
[Ref.: #69422]		NaCl		growth	0-2.5	%

[Ref.: #67770]

Observation

quinones: MK-10(H₆), MK-9(H₆), MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69422]	arabinose ChEBI	+/-	growth
[Ref.: #30829]	cellobiose ChEBI	+	carbon source
[Ref.: #69422]	cellulose ChEBI	+/-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30829]	esculin ChEBI	+	hydrolysis
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #30829]	fructose ChEBI	+	carbon source
[Ref.: #69422]	fructose ChEBI	+	growth
[Ref.: #30829]	galactose ChEBI	+	carbon source
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #30829]	glucose ChEBI	+	carbon source
[Ref.: #69422]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69422]	inositol ChEBI	-	growth
[Ref.: #30829]	lactose ChEBI	+	carbon source
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30829]	maltose ChEBI	+	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30829]	mannose ChEBI	+	carbon source
[Ref.: #69422]	mannose ChEBI	-	growth
[Ref.: #30829]	melibiose ChEBI	+	carbon source
[Ref.: #30829]	nitrate ChEBI	+	reduction
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69422]	raffinose ChEBI	+	growth
[Ref.: #69422]	rhamnose ChEBI	-	growth
[Ref.: #30829]	sucrose ChEBI	+	carbon source
[Ref.: #69422]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #30829]	xylose ChEBI	+	carbon source
[Ref.: #69422]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #30829]	catalase	+	1.11.1.6
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69422]	3915	-	-	-	+	-	+	+	-	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69422]	6099	not determinedn.d.	+	+	+	+/-	+	+/-	+/-	-	-	+/-	-	+/-	+	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19374]	Sample type/isolated from	composite soil mangrove
[Ref.: #19374]	Geographic location (country and/or sea, region)	Hainan Province, Wenchang, (19° 37.647' N, 110° 50.083' E)
[Ref.: #19374]	Country	China
[Ref.: #19374]	Country ISO 3 Code	CHN
[Ref.: #19374]	Continent	Asia
[Ref.: #19374]	Geographic location	19.6275°/110.8350°

[Ref.: #67770]	Sample type/isolated from	Mangrove soil from Wenchang
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hainan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Composting
#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19374]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19374]	Micromonospora wenchangensis strain 2602GPT1-05 16S ribosomal RNA gene, partial sequence	JQ768361	1476	GenBank ENA	1185415 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Micromonospora wenchangensis CCTCC AA 2012002	GCA_002210435	contig	GenBank ENA	1185415 tax ID
[Ref.: #66792]	Micromonospora wenchangensis strain CCTCC AA 2012002	1185415.3	wgs	PATRIC	1185415 tax ID	*
[Ref.: #66792]	Micromonospora wenchangensis CCTCC AA 2012002	2788500614	draft	JGI IMG/M	1185415 tax ID	*

[Ref.: #19374]	GC-content	71.7 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30829]	GC-content	71.7 mol%
[Ref.: #67770]	GC-content	73 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Micromonospora wenchangensis strain CCTCC AA 2012002 PATRIC: 1185415.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Micromonospora wenchangensis strain CCTCC AA 2012002 PATRIC: 1185415.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.395	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.788	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	94.05	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.096	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88	yes

Availability in culture collections External links

[Ref.: #19374]

Culture collection no.

DSM 45709, CCTCC AA 2012002, JCM 31038

[Ref.: #87356]

SI-ID 400649

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Micromonospora humida sp. nov., exhibiting antimicrobial potential, isolated from riverside soil.	Ra JS, Kim MJ, Lee DH, Jeong JW, Kim SB	Int J Syst Evol Microbiol	10.1099/ijsem.0.005157	2021	*
Phylogeny	Micromonospora mangrovi sp. nov., isolated from mangrove soil.	Xie QY, Ren J, Li L, Li Y, Deng ZX, Hong K	Antonie Van Leeuwenhoek	10.1007/s10482-015-0641-x	2016	*
Phylogeny	Micromonospora nickelidurans sp. nov., isolated from soil from a nickel-mining site.	Lin YB, Fan MC, Guo YQ, Di XH, Dong DH, Zhang X, Wei GH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000623	2015	*
Phylogeny	Micromonospora wenchangensis sp. nov., isolated from mangrove soil.	Ren J, Li L, Wei B, Tang YL, Deng ZX, Sun M, Hong K	Int J Syst Evol Microbiol	10.1099/ijs.0.045476-0	2012	*
Phylogeny	Micromonospora antibiotica sp. nov. and Micromonospora humidisoli sp. nov., two new actinobacterial species exhibiting antimicrobial potential.	Lee DH, Ra JS, Kim MJ, Kim SB	Int J Syst Evol Microbiol	10.1099/ijsem.0.005522	2022	*

References

#19374

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45709

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30829

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27159 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69422

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87356

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400649.1 )

#27159

IJSEM 2389 2013 ( DOI 10.1099/ijs.0.045476-0 , PubMed 23178730 )

* These data were automatically processed and therefore are not curated

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Micromonospora wenchangensis strain CCTCC AA 2012002

Micromonospora wenchangensis strain CCTCC AA 2012002

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